Wall clock time and date at job start Tue Mar 31 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.33285 * 2 1 4 4 C 1.54480 * 110.37546 * 122.25536 * 2 1 3 5 5 C 1.54502 * 104.06575 * 142.80845 * 4 2 1 6 6 C 1.54485 * 104.06349 * 359.97438 * 5 4 2 7 7 H 1.08999 * 110.36919 * 94.96685 * 6 5 4 8 8 C 1.53002 * 110.37234 * 217.19160 * 6 5 4 9 9 C 1.52995 * 109.46755 * 185.00064 * 8 6 5 10 10 C 1.50701 * 109.46888 * 179.97438 * 9 8 6 11 11 O 1.21298 * 120.00264 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00195 * 180.02562 * 10 9 8 13 13 C 1.37094 * 120.00024 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00553 * 30.13513 * 13 12 10 15 15 C 1.38959 * 119.99798 * 210.13866 * 13 12 10 16 16 N 1.31412 * 119.99907 * 40.46054 * 15 13 12 17 17 Si 1.86795 * 119.99869 * 220.46344 * 15 13 12 18 18 H 1.48502 * 109.47232 * 269.99534 * 17 15 13 19 19 H 1.48504 * 109.47154 * 30.00027 * 17 15 13 20 20 H 1.48498 * 109.46979 * 149.99496 * 17 15 13 21 21 C 1.46501 * 119.99866 * 359.97438 * 12 10 9 22 22 C 1.50696 * 109.47474 * 266.85140 * 21 12 10 23 23 O 1.20834 * 120.00034 * 359.97438 * 22 21 12 24 24 O 1.34223 * 120.00418 * 180.02562 * 22 21 12 25 25 O 1.44421 * 104.80230 * 336.02351 * 6 5 4 26 26 H 1.09006 * 109.47207 * 297.74938 * 1 2 3 27 27 H 1.08999 * 109.47042 * 57.74788 * 1 2 3 28 28 H 1.08996 * 109.47447 * 177.74700 * 1 2 3 29 29 H 1.09001 * 110.50487 * 24.16139 * 4 2 1 30 30 H 1.08997 * 110.50565 * 261.45599 * 4 2 1 31 31 H 1.09008 * 110.50781 * 241.35606 * 5 4 2 32 32 H 1.08999 * 110.63003 * 118.70231 * 5 4 2 33 33 H 1.09000 * 109.46943 * 65.00200 * 8 6 5 34 34 H 1.09007 * 109.46894 * 305.00201 * 8 6 5 35 35 H 1.09000 * 109.47284 * 60.00345 * 9 8 6 36 36 H 1.08999 * 109.47645 * 299.99981 * 9 8 6 37 37 H 0.97001 * 119.99771 * 5.87434 * 16 15 13 38 38 H 1.09004 * 109.46750 * 26.84785 * 21 12 10 39 39 H 1.08999 * 109.47092 * 146.84640 * 21 12 10 40 40 H 0.96699 * 117.00257 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7729 1.2247 5 6 3.3177 -1.5050 0.6873 6 6 3.3869 -1.0884 -0.7987 7 1 4.0535 -0.2350 -0.9228 8 6 3.8597 -2.2618 -1.6593 9 6 4.0403 -1.7938 -3.1047 10 6 4.5065 -2.9494 -3.9523 11 8 4.6779 -4.0399 -3.4496 12 7 4.7340 -2.7709 -5.2687 13 6 5.1576 -3.8223 -6.0399 14 1 4.8646 -4.8304 -5.7864 15 6 5.9640 -3.5908 -7.1476 16 7 6.9277 -2.6996 -7.0840 17 14 5.6781 -4.5464 -8.7269 18 1 6.4894 -5.7900 -8.7068 19 1 4.2392 -4.8957 -8.8406 20 1 6.0784 -3.7130 -9.8890 21 6 4.5274 -1.4537 -5.8758 22 6 3.1295 -1.3706 -6.4325 23 8 2.3824 -2.3151 -6.3328 24 8 2.7146 -0.2479 -7.0399 25 8 2.0323 -0.7256 -1.1436 26 1 -0.3634 0.4785 0.9095 27 1 -0.3633 0.5484 -0.8691 28 1 -0.3634 -1.0268 -0.0404 29 1 1.3275 -1.4904 1.5786 30 1 2.3429 -0.0819 2.0215 31 1 3.1954 -2.5846 0.7757 32 1 4.2120 -1.1782 1.2180 33 1 3.1173 -3.0593 -1.6257 34 1 4.8101 -2.6336 -1.2763 35 1 4.7826 -0.9963 -3.1384 36 1 3.0899 -1.4220 -3.4877 37 1 7.1316 -2.2651 -6.2411 38 1 4.6642 -0.6800 -5.1202 39 1 5.2482 -1.3073 -6.6802 40 1 1.8099 -0.2421 -7.3813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828221273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:42 Heat of formation + Delta-G solvation = -176.973840 kcal Electronic energy + Delta-G solvation = -23384.103893 eV Core-core repulsion = 19777.899287 eV Total energy + Delta-G solvation = -3606.204606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.88174 -39.57742 -38.34754 -35.65199 -34.89920 -33.57603 -32.25833 -31.87276 -30.44276 -27.83200 -26.65559 -24.40817 -22.70341 -21.49085 -21.24701 -20.75302 -18.96480 -17.62457 -17.31798 -16.56774 -16.29068 -16.09889 -15.84927 -15.20001 -14.74345 -14.53606 -14.30917 -13.86985 -13.77553 -13.21924 -13.06683 -12.61828 -12.53313 -12.25131 -12.20527 -11.92048 -11.67728 -11.47037 -11.20926 -11.03452 -10.92509 -10.86757 -10.69803 -10.67924 -10.48172 -10.22925 -10.14431 -10.01516 -9.70418 -8.97797 -8.43301 -7.91553 -6.77552 -3.90401 2.84649 3.28410 3.32119 3.39121 3.59829 3.80554 3.93322 4.22285 4.50487 4.54789 4.66444 4.82416 4.90281 5.01353 5.11887 5.25259 5.32000 5.38504 5.45235 5.51556 5.60645 5.65982 5.74896 5.77418 5.83627 5.91498 5.98803 6.01106 6.05155 6.15011 6.16686 6.43143 6.58240 6.96330 6.99660 7.80841 8.16677 8.44257 8.54445 8.89899 9.31209 9.80418 10.46457 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023729 B = 0.004415 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.720737 B = 6340.204772 C = 7033.743552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.151 4.151 5 C -0.151 4.151 6 C 0.074 3.926 7 H 0.068 0.932 8 C -0.091 4.091 9 C -0.135 4.135 10 C 0.464 3.536 11 O -0.565 6.565 12 N -0.434 5.434 13 C -0.411 4.411 14 H 0.089 0.911 15 C 0.019 3.981 16 N -0.852 5.852 17 Si 1.052 2.948 18 H -0.282 1.282 19 H -0.282 1.282 20 H -0.279 1.279 21 C 0.104 3.896 22 C 0.455 3.545 23 O -0.496 6.496 24 O -0.527 6.527 25 O -0.365 6.365 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.277 0.723 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 10.379 10.722 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.009 3.991 3 H 0.083 0.917 4 C -0.188 4.188 5 C -0.189 4.189 6 C 0.017 3.983 7 H 0.085 0.915 8 C -0.129 4.129 9 C -0.176 4.176 10 C 0.253 3.747 11 O -0.448 6.448 12 N -0.155 5.155 13 C -0.537 4.537 14 H 0.107 0.893 15 C -0.191 4.191 16 N -0.484 5.484 17 Si 0.877 3.123 18 H -0.208 1.208 19 H -0.207 1.207 20 H -0.204 1.204 21 C -0.023 4.023 22 C 0.295 3.705 23 O -0.382 6.382 24 O -0.338 6.338 25 O -0.284 6.284 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.145 0.855 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -7.029 9.343 9.391 14.996 hybrid contribution -1.061 0.348 1.408 1.797 sum -8.090 9.691 10.799 16.612 Atomic orbital electron populations 1.21795 0.93476 1.02986 1.02104 1.22944 0.95209 0.95350 0.85561 0.91673 1.22991 0.97940 0.99700 0.98206 1.22983 0.98122 1.01854 0.95953 1.23100 0.84436 0.97322 0.93453 0.91459 1.21339 1.02342 0.96133 0.93064 1.21609 1.01990 0.98160 0.95822 1.20288 0.82369 0.89928 0.82068 1.90523 1.55354 1.27078 1.71795 1.43214 1.58202 1.08180 1.05870 1.20073 1.33917 0.89083 1.10667 0.89306 1.26253 0.91018 0.99232 1.02551 1.70804 1.20341 1.26373 1.30889 0.83817 0.76843 0.76319 0.75287 1.20817 1.20724 1.20411 1.21132 0.90681 0.89226 1.01252 1.24783 0.91503 0.79346 0.74917 1.90702 1.55838 1.37538 1.54084 1.84586 1.37141 1.41674 1.70441 1.89216 1.27214 1.74151 1.37841 0.91446 0.91928 0.91744 0.90696 0.90880 0.90327 0.90627 0.90518 0.89975 0.90392 0.90165 0.91233 0.88186 0.85520 0.74432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.52 37.16 0.35 -1.03 16 2 C 0.07 0.74 3.92 -25.96 -0.10 0.63 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.15 -1.44 6.63 -25.17 -0.17 -1.60 16 5 C -0.15 -1.66 6.63 -25.16 -0.17 -1.83 16 6 C 0.07 1.00 3.25 -25.95 -0.08 0.92 16 7 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 8 C -0.09 -1.52 4.13 -26.73 -0.11 -1.63 16 9 C -0.14 -2.54 4.14 -27.88 -0.12 -2.66 16 10 C 0.46 11.47 7.63 -10.98 -0.08 11.39 16 11 O -0.57 -16.00 15.76 5.54 0.09 -15.92 16 12 N -0.43 -11.05 1.95 -116.09 -0.23 -11.27 16 13 C -0.41 -11.72 8.75 -14.93 -0.13 -11.85 16 14 H 0.09 2.78 7.76 -52.49 -0.41 2.37 16 15 C 0.02 0.51 4.50 -17.46 -0.08 0.43 16 16 N -0.85 -22.90 12.22 55.50 0.68 -22.22 16 17 Si 1.05 24.13 30.05 -169.99 -5.11 19.02 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 C 0.10 2.21 5.34 -5.20 -0.03 2.18 16 22 C 0.45 9.34 8.38 36.00 0.30 9.65 16 23 O -0.50 -12.02 17.15 -18.76 -0.32 -12.34 16 24 O -0.53 -8.35 13.42 -39.24 -0.53 -8.88 16 25 O -0.36 -5.38 10.82 -35.23 -0.38 -5.77 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.90 7.87 -51.92 -0.41 0.49 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 34 H 0.08 1.36 8.10 -51.92 -0.42 0.94 16 35 H 0.08 1.26 7.41 -51.93 -0.38 0.87 16 36 H 0.08 1.52 7.97 -51.93 -0.41 1.11 16 37 H 0.28 7.42 8.14 -40.82 -0.33 7.09 16 38 H 0.10 1.74 6.32 -51.93 -0.33 1.42 16 39 H 0.13 2.84 5.73 -51.93 -0.30 2.54 16 40 H 0.40 4.46 9.10 45.56 0.41 4.88 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -34.67 336.89 -6.30 -40.96 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.16 Total: 6.74 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.41 Total: 4.59 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.45 Total: -33.49 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -1.14 Total: -42.90 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.11 Total: 19.02 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.67 -6.30 -40.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828221273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.010 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds