Wall clock time and date at job start Tue Mar 31 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.33285 * 2 1 4 4 C 1.54480 * 110.37546 * 122.25536 * 2 1 3 5 5 C 1.54502 * 104.06575 * 142.80845 * 4 2 1 6 6 C 1.54485 * 104.06349 * 359.97438 * 5 4 2 7 7 H 1.08999 * 110.36919 * 94.96685 * 6 5 4 8 8 C 1.53002 * 110.37234 * 217.19160 * 6 5 4 9 9 C 1.52995 * 109.46755 * 185.00064 * 8 6 5 10 10 C 1.50701 * 109.46888 * 179.97438 * 9 8 6 11 11 O 1.21298 * 120.00264 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00195 * 180.02562 * 10 9 8 13 13 C 1.37094 * 120.00024 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00553 * 30.13513 * 13 12 10 15 15 C 1.38959 * 119.99798 * 210.13866 * 13 12 10 16 16 N 1.31412 * 119.99907 * 40.46054 * 15 13 12 17 17 Si 1.86795 * 119.99869 * 220.46344 * 15 13 12 18 18 H 1.48502 * 109.47232 * 269.99534 * 17 15 13 19 19 H 1.48504 * 109.47154 * 30.00027 * 17 15 13 20 20 H 1.48498 * 109.46979 * 149.99496 * 17 15 13 21 21 C 1.46501 * 119.99866 * 359.97438 * 12 10 9 22 22 C 1.50696 * 109.47474 * 266.85140 * 21 12 10 23 23 O 1.20834 * 120.00034 * 359.97438 * 22 21 12 24 24 O 1.34223 * 120.00418 * 180.02562 * 22 21 12 25 25 O 1.44421 * 104.80230 * 336.02351 * 6 5 4 26 26 H 1.09006 * 109.47207 * 297.74938 * 1 2 3 27 27 H 1.08999 * 109.47042 * 57.74788 * 1 2 3 28 28 H 1.08996 * 109.47447 * 177.74700 * 1 2 3 29 29 H 1.09001 * 110.50487 * 24.16139 * 4 2 1 30 30 H 1.08997 * 110.50565 * 261.45599 * 4 2 1 31 31 H 1.09008 * 110.50781 * 241.35606 * 5 4 2 32 32 H 1.08999 * 110.63003 * 118.70231 * 5 4 2 33 33 H 1.09000 * 109.46943 * 65.00200 * 8 6 5 34 34 H 1.09007 * 109.46894 * 305.00201 * 8 6 5 35 35 H 1.09000 * 109.47284 * 60.00345 * 9 8 6 36 36 H 1.08999 * 109.47645 * 299.99981 * 9 8 6 37 37 H 0.97001 * 119.99771 * 5.87434 * 16 15 13 38 38 H 1.09004 * 109.46750 * 26.84785 * 21 12 10 39 39 H 1.08999 * 109.47092 * 146.84640 * 21 12 10 40 40 H 0.96699 * 117.00257 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7729 1.2247 5 6 3.3177 -1.5050 0.6873 6 6 3.3869 -1.0884 -0.7987 7 1 4.0535 -0.2350 -0.9228 8 6 3.8597 -2.2618 -1.6593 9 6 4.0403 -1.7938 -3.1047 10 6 4.5065 -2.9494 -3.9523 11 8 4.6779 -4.0399 -3.4496 12 7 4.7340 -2.7709 -5.2687 13 6 5.1576 -3.8223 -6.0399 14 1 4.8646 -4.8304 -5.7864 15 6 5.9640 -3.5908 -7.1476 16 7 6.9277 -2.6996 -7.0840 17 14 5.6781 -4.5464 -8.7269 18 1 6.4894 -5.7900 -8.7068 19 1 4.2392 -4.8957 -8.8406 20 1 6.0784 -3.7130 -9.8890 21 6 4.5274 -1.4537 -5.8758 22 6 3.1295 -1.3706 -6.4325 23 8 2.3824 -2.3151 -6.3328 24 8 2.7146 -0.2479 -7.0399 25 8 2.0323 -0.7256 -1.1436 26 1 -0.3634 0.4785 0.9095 27 1 -0.3633 0.5484 -0.8691 28 1 -0.3634 -1.0268 -0.0404 29 1 1.3275 -1.4904 1.5786 30 1 2.3429 -0.0819 2.0215 31 1 3.1954 -2.5846 0.7757 32 1 4.2120 -1.1782 1.2180 33 1 3.1173 -3.0593 -1.6257 34 1 4.8101 -2.6336 -1.2763 35 1 4.7826 -0.9963 -3.1384 36 1 3.0899 -1.4220 -3.4877 37 1 7.1316 -2.2651 -6.2411 38 1 4.6642 -0.6800 -5.1202 39 1 5.2482 -1.3073 -6.6802 40 1 1.8099 -0.2421 -7.3813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828221273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:41 Heat of formation + Delta-G solvation = -201.261946 kcal Electronic energy + Delta-G solvation = -23385.157104 eV Core-core repulsion = 19777.899287 eV Total energy + Delta-G solvation = -3607.257818 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.54049 -40.65782 -40.08173 -37.31512 -36.73972 -34.91315 -33.83185 -33.16235 -31.55165 -29.62696 -27.99082 -26.09049 -23.96008 -23.03659 -22.29991 -21.71886 -20.81422 -19.41050 -19.07007 -18.07269 -17.65474 -17.50633 -17.02256 -16.80343 -16.41408 -15.92466 -15.80534 -15.59240 -14.85845 -14.63084 -14.32548 -14.03290 -13.98550 -13.76295 -13.48142 -13.16231 -13.09362 -12.76271 -12.59182 -12.51957 -12.49292 -12.16342 -12.10023 -11.99363 -11.79471 -11.76051 -11.66317 -11.49540 -10.98809 -10.66685 -10.42098 -9.94783 -8.92378 -6.06417 1.20456 1.41982 1.49656 1.66617 1.79335 2.11821 2.38491 2.80349 2.89108 2.94372 3.55557 3.69294 3.83889 3.94598 3.95781 4.03350 4.13006 4.30137 4.36263 4.41749 4.45066 4.49908 4.59079 4.62829 4.69007 4.79218 4.92837 4.95323 5.09934 5.14076 5.19459 5.24495 5.29417 5.59374 5.75753 5.89872 6.03507 6.47249 6.85999 7.01334 7.26828 7.82054 8.31614 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023729 B = 0.004415 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.720737 B = 6340.204772 C = 7033.743552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.058 3.942 3 H 0.082 0.918 4 C -0.144 4.144 5 C -0.151 4.151 6 C 0.078 3.922 7 H 0.089 0.911 8 C -0.086 4.086 9 C -0.120 4.120 10 C 0.448 3.552 11 O -0.616 6.616 12 N -0.446 5.446 13 C -0.445 4.445 14 H 0.044 0.956 15 C -0.002 4.002 16 N -0.851 5.851 17 Si 1.094 2.906 18 H -0.271 1.271 19 H -0.289 1.289 20 H -0.258 1.258 21 C 0.102 3.898 22 C 0.466 3.534 23 O -0.540 6.540 24 O -0.505 6.505 25 O -0.397 6.397 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.272 0.728 38 H 0.141 0.859 39 H 0.118 0.882 40 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.856 13.114 11.052 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.001 3.999 3 H 0.099 0.901 4 C -0.182 4.182 5 C -0.189 4.189 6 C 0.020 3.980 7 H 0.106 0.894 8 C -0.124 4.124 9 C -0.160 4.160 10 C 0.240 3.760 11 O -0.502 6.502 12 N -0.166 5.166 13 C -0.571 4.571 14 H 0.062 0.938 15 C -0.209 4.209 16 N -0.482 5.482 17 Si 0.915 3.085 18 H -0.196 1.196 19 H -0.215 1.215 20 H -0.182 1.182 21 C -0.024 4.024 22 C 0.308 3.692 23 O -0.429 6.429 24 O -0.318 6.318 25 O -0.318 6.318 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.159 0.841 39 H 0.136 0.864 40 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -7.175 12.149 9.705 17.124 hybrid contribution -1.052 -0.437 1.291 1.721 sum -8.227 11.712 10.995 18.048 Atomic orbital electron populations 1.21826 0.92792 1.02377 1.03267 1.23236 0.95906 0.95896 0.84893 0.90060 1.22992 0.97033 0.99905 0.98271 1.22995 0.99986 1.01353 0.94574 1.23070 0.84522 0.96355 0.94010 0.89372 1.21276 1.01474 0.96973 0.92697 1.21571 1.02539 0.96354 0.95573 1.21390 0.81364 0.90930 0.82365 1.90478 1.57423 1.29493 1.72791 1.43351 1.58083 1.08977 1.06206 1.19846 1.35806 0.88654 1.12807 0.93780 1.27318 0.90018 0.99479 1.04115 1.70884 1.20296 1.26469 1.30551 0.83253 0.76383 0.76060 0.72828 1.19638 1.21537 1.18209 1.21259 0.91008 0.88037 1.02084 1.24398 0.90840 0.79556 0.74417 1.90705 1.56948 1.39345 1.55942 1.84492 1.39144 1.38868 1.69287 1.89184 1.27755 1.74930 1.39912 0.88775 0.92421 0.93094 0.90724 0.88187 0.91688 0.88412 0.93610 0.90284 0.86931 0.90035 0.91801 0.84133 0.86402 0.71464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.52 71.98 0.68 -1.81 16 2 C 0.06 1.13 3.92 31.10 0.12 1.25 16 3 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 4 C -0.14 -2.37 6.63 31.61 0.21 -2.16 16 5 C -0.15 -3.03 6.63 31.61 0.21 -2.82 16 6 C 0.08 1.97 3.25 31.10 0.10 2.07 16 7 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 8 C -0.09 -2.91 4.13 30.59 0.13 -2.78 16 9 C -0.12 -4.46 4.14 29.85 0.12 -4.34 16 10 C 0.45 22.83 7.63 87.66 0.67 23.50 16 11 O -0.62 -36.85 15.76 -3.08 -0.05 -36.90 16 12 N -0.45 -23.19 1.95 -639.58 -1.24 -24.44 16 13 C -0.44 -26.31 8.75 84.04 0.74 -25.57 16 14 H 0.04 2.95 7.76 -2.91 -0.02 2.93 16 15 C 0.00 -0.09 4.50 84.93 0.38 0.29 16 16 N -0.85 -45.37 12.22 21.67 0.26 -45.11 16 17 Si 1.09 48.73 30.05 68.60 2.06 50.79 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 21 C 0.10 4.22 5.34 85.63 0.46 4.67 16 22 C 0.47 18.57 8.38 71.23 0.60 19.17 16 23 O -0.54 -26.25 17.15 21.94 0.38 -25.87 16 24 O -0.50 -14.49 13.42 -51.35 -0.69 -15.18 16 25 O -0.40 -11.22 10.82 -148.98 -1.61 -12.83 16 26 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.23 7.87 -2.39 -0.02 1.21 16 30 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.47 7.87 -2.38 -0.02 1.45 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 34 H 0.08 2.67 8.10 -2.38 -0.02 2.65 16 35 H 0.11 3.36 7.41 -2.39 -0.02 3.34 16 36 H 0.08 3.03 7.97 -2.39 -0.02 3.01 16 37 H 0.27 14.55 8.14 -92.71 -0.75 13.79 16 38 H 0.14 4.54 6.32 -2.39 -0.02 4.53 16 39 H 0.12 5.15 5.73 -2.39 -0.01 5.13 16 40 H 0.42 8.10 9.10 -74.06 -0.67 7.42 16 Total: -1.00 -79.17 336.89 3.92 -75.25 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.39 Total: 22.82 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 4.42 Total: 11.46 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -0.98 Total: -69.54 kcal Atomic # 8 Polarization: -88.81 SS G_CDS: -1.97 Total: -90.78 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.06 Total: 50.79 kcal Total: -79.17 3.92 -75.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828221273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.008 kcal (2) G-P(sol) polarization free energy of solvation -79.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds