Wall clock time and date at job start Tue Mar 31 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.26899 * 2 1 4 4 C 1.54942 * 110.30872 * 122.19273 * 2 1 3 5 5 C 1.55304 * 100.94205 * 155.36189 * 4 2 1 6 6 C 1.54384 * 102.25293 * 325.86845 * 5 4 2 7 7 H 1.09003 * 109.83279 * 261.84259 * 6 5 4 8 8 C 1.52998 * 109.83106 * 140.86880 * 6 5 4 9 9 C 1.53005 * 109.47190 * 175.41347 * 8 6 5 10 10 C 1.50700 * 109.46804 * 179.97438 * 9 8 6 11 11 O 1.21286 * 120.00241 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99741 * 180.02562 * 10 9 8 13 13 C 1.37103 * 120.00425 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99223 * 322.20454 * 13 12 10 15 15 C 1.38946 * 119.99944 * 142.20065 * 13 12 10 16 16 N 1.31420 * 119.99464 * 158.60676 * 15 13 12 17 17 Si 1.86795 * 120.00576 * 338.60123 * 15 13 12 18 18 H 1.48503 * 109.47046 * 95.99491 * 17 15 13 19 19 H 1.48494 * 109.47398 * 215.99198 * 17 15 13 20 20 H 1.48499 * 109.46935 * 335.99642 * 17 15 13 21 21 C 1.46509 * 120.00167 * 359.97438 * 12 10 9 22 22 C 1.50702 * 109.46880 * 83.23797 * 21 12 10 23 23 O 1.20829 * 119.99982 * 0.02562 * 22 21 12 24 24 O 1.34227 * 120.00340 * 180.02562 * 22 21 12 25 25 O 1.43243 * 107.58563 * 21.35705 * 6 5 4 26 26 H 1.09002 * 109.47103 * 180.63509 * 1 2 3 27 27 H 1.09006 * 109.46915 * 60.63913 * 1 2 3 28 28 H 1.08997 * 109.47453 * 300.63972 * 1 2 3 29 29 H 1.08997 * 111.12957 * 273.28422 * 4 2 1 30 30 H 1.09002 * 111.12296 * 37.44589 * 4 2 1 31 31 H 1.09003 * 110.85093 * 207.68058 * 5 4 2 32 32 H 1.08995 * 111.02245 * 84.13624 * 5 4 2 33 33 H 1.09007 * 109.46980 * 295.41498 * 8 6 5 34 34 H 1.08996 * 109.47110 * 55.41430 * 8 6 5 35 35 H 1.08995 * 109.46646 * 300.00038 * 9 8 6 36 36 H 1.08996 * 109.47026 * 60.00032 * 9 8 6 37 37 H 0.97003 * 119.99742 * 180.02562 * 16 15 13 38 38 H 1.08994 * 109.47534 * 203.23887 * 21 12 10 39 39 H 1.09001 * 109.46891 * 323.24321 * 21 12 10 40 40 H 0.96693 * 117.00543 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0226 0.0000 4 6 2.0678 -0.7742 1.2297 5 6 3.4699 -1.2031 0.7179 6 6 3.2113 -1.4412 -0.7854 7 1 3.0625 -2.5049 -0.9711 8 6 4.3992 -0.9309 -1.6036 9 6 4.1864 -1.2732 -3.0796 10 6 5.3562 -0.7700 -3.8855 11 8 6.2698 -0.1939 -3.3338 12 7 5.3865 -0.9592 -5.2196 13 6 6.4509 -0.5020 -5.9528 14 1 6.9140 0.4410 -5.7021 15 6 6.9339 -1.2517 -7.0183 16 7 7.6386 -0.6717 -7.9638 17 14 6.5816 -3.0841 -7.1068 18 1 5.3945 -3.3189 -7.9675 19 1 7.7566 -3.7869 -7.6817 20 1 6.3135 -3.6030 -5.7415 21 6 4.2826 -1.6546 -5.8862 22 6 3.1657 -0.6799 -6.1572 23 8 3.2802 0.4770 -5.8278 24 8 2.0436 -1.0968 -6.7645 25 8 2.0286 -0.7156 -1.1413 26 1 -0.3633 -1.0276 0.0114 27 1 -0.3633 0.5039 -0.8957 28 1 -0.3634 0.5237 0.8841 29 1 2.1495 -0.1223 2.0994 30 1 1.4470 -1.6429 1.4492 31 1 3.7966 -2.1216 1.2055 32 1 4.2000 -0.4072 0.8646 33 1 4.4815 0.1500 -1.4894 34 1 5.3147 -1.4045 -1.2492 35 1 4.1041 -2.3540 -3.1937 36 1 3.2709 -0.7996 -3.4340 37 1 7.9755 -1.1950 -8.7079 38 1 4.6342 -2.0754 -6.8281 39 1 3.9175 -2.4561 -5.2439 40 1 1.3553 -0.4351 -6.9174 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828221274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:44 Heat of formation + Delta-G solvation = -168.580171 kcal Electronic energy + Delta-G solvation = -23534.237682 eV Core-core repulsion = 19928.397052 eV Total energy + Delta-G solvation = -3605.840630 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.01886 -39.64579 -38.42597 -35.70731 -34.85895 -33.57820 -32.29945 -32.12949 -30.52942 -28.00908 -26.82895 -24.73405 -22.66475 -21.67588 -21.58460 -20.40757 -18.65941 -17.71812 -17.27917 -17.04873 -16.50591 -16.11886 -15.75148 -15.26751 -14.90673 -14.53709 -14.30055 -13.73440 -13.66676 -13.42083 -12.99324 -12.75600 -12.57834 -12.51934 -12.29425 -11.97763 -11.96587 -11.74637 -11.43179 -11.11492 -11.04363 -10.91688 -10.85451 -10.74808 -10.57538 -10.48838 -10.08170 -9.95692 -9.43551 -9.15004 -8.56554 -7.89602 -6.42406 -4.01645 2.72719 2.96422 3.14871 3.18885 3.27686 3.73823 3.86526 4.07403 4.31983 4.41324 4.62119 4.73561 4.96878 5.06577 5.09736 5.22419 5.30377 5.38919 5.43375 5.47073 5.53263 5.60185 5.67363 5.71194 5.75343 5.79492 5.89084 5.96531 6.01687 6.06748 6.12196 6.45797 6.57666 6.92141 7.13273 7.46856 8.25049 8.36401 8.46557 8.91419 9.24798 9.68245 10.69746 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.004854 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.242504 B = 5767.412721 C = 6395.814443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 H 0.069 0.931 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.080 3.920 7 H 0.078 0.922 8 C -0.108 4.108 9 C -0.138 4.138 10 C 0.484 3.516 11 O -0.551 6.551 12 N -0.456 5.456 13 C -0.313 4.313 14 H 0.107 0.893 15 C 0.058 3.942 16 N -0.859 5.859 17 Si 0.862 3.138 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.259 1.259 21 C 0.100 3.900 22 C 0.456 3.544 23 O -0.493 6.493 24 O -0.526 6.526 25 O -0.372 6.372 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.275 0.725 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.404 -5.282 12.761 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.016 3.984 3 H 0.086 0.914 4 C -0.189 4.189 5 C -0.189 4.189 6 C 0.022 3.978 7 H 0.096 0.904 8 C -0.146 4.146 9 C -0.179 4.179 10 C 0.273 3.727 11 O -0.431 6.431 12 N -0.178 5.178 13 C -0.440 4.440 14 H 0.125 0.875 15 C -0.148 4.148 16 N -0.495 5.495 17 Si 0.688 3.312 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.183 1.183 21 C -0.026 4.026 22 C 0.296 3.704 23 O -0.378 6.378 24 O -0.338 6.338 25 O -0.292 6.292 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.122 0.878 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -13.531 -4.938 12.828 19.288 hybrid contribution -0.529 -0.501 -0.377 0.820 sum -14.060 -5.439 12.451 19.552 Atomic orbital electron populations 1.21876 0.94019 1.02559 1.02257 1.22935 0.94602 0.95820 0.85083 0.91352 1.23304 0.96466 1.00713 0.98428 1.23170 0.97582 1.02817 0.95351 1.22832 0.85650 0.95941 0.93352 0.90375 1.21670 0.96681 1.02751 0.93464 1.21648 0.98761 1.01494 0.95980 1.20313 0.87897 0.82566 0.81919 1.90552 1.39222 1.43598 1.69743 1.43424 1.15668 1.53692 1.05058 1.19069 1.07809 1.06208 1.10919 0.87506 1.25395 0.96067 0.98198 0.95160 1.69763 1.34941 1.36167 1.08653 0.87161 0.78216 0.86510 0.79297 1.19809 1.20664 1.18259 1.21597 0.86034 0.93385 1.01618 1.24644 0.82181 0.89786 0.73821 1.90718 1.79395 1.19716 1.47969 1.84571 1.28163 1.47223 1.73815 1.88469 1.42154 1.64749 1.33821 0.92090 0.91859 0.91533 0.90215 0.90501 0.90132 0.90104 0.90800 0.90275 0.90266 0.89645 0.91477 0.86972 0.87794 0.74153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.62 37.16 0.36 -1.01 16 2 C 0.07 0.81 4.07 -25.71 -0.10 0.70 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.15 -1.35 6.57 -24.48 -0.16 -1.51 16 5 C -0.15 -1.53 6.55 -24.78 -0.16 -1.70 16 6 C 0.08 1.02 3.52 -26.01 -0.09 0.93 16 7 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 8 C -0.11 -1.73 4.07 -26.73 -0.11 -1.84 16 9 C -0.14 -2.52 4.23 -27.88 -0.12 -2.64 16 10 C 0.48 11.61 7.37 -10.99 -0.08 11.53 16 11 O -0.55 -15.13 15.85 5.55 0.09 -15.05 16 12 N -0.46 -11.33 1.74 -116.09 -0.20 -11.54 16 13 C -0.31 -9.05 9.36 -14.93 -0.14 -9.19 16 14 H 0.11 3.52 7.92 -52.48 -0.42 3.10 16 15 C 0.06 1.59 5.28 -17.47 -0.09 1.50 16 16 N -0.86 -24.95 13.96 55.50 0.77 -24.18 16 17 Si 0.86 19.58 24.97 -169.99 -4.24 15.34 16 18 H -0.27 -5.67 6.72 56.52 0.38 -5.29 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 21 C 0.10 2.05 4.33 -5.19 -0.02 2.02 16 22 C 0.46 8.98 7.63 36.01 0.27 9.25 16 23 O -0.49 -11.47 17.00 -18.75 -0.32 -11.79 16 24 O -0.53 -7.91 13.42 -39.25 -0.53 -8.44 16 25 O -0.37 -5.28 10.32 -35.23 -0.36 -5.65 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 33 H 0.07 1.32 8.10 -51.92 -0.42 0.89 16 34 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.08 1.22 7.42 -51.93 -0.39 0.84 16 36 H 0.09 1.58 7.17 -51.93 -0.37 1.21 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.11 2.36 3.61 -51.93 -0.19 2.17 16 39 H 0.10 1.71 6.73 -51.93 -0.35 1.36 16 40 H 0.40 4.18 9.10 45.56 0.41 4.59 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -35.18 330.14 -5.35 -40.53 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.08 Total: 7.73 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -0.45 Total: 8.07 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.57 Total: -35.72 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -1.12 Total: -40.92 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.24 Total: 15.34 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.18 -5.35 -40.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828221274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.053 kcal (2) G-P(sol) polarization free energy of solvation -35.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds