Wall clock time and date at job start Tue Mar 31 2020 05:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.26899 * 2 1 4 4 C 1.54942 * 110.30872 * 122.19273 * 2 1 3 5 5 C 1.55304 * 100.94205 * 155.36189 * 4 2 1 6 6 C 1.54384 * 102.25293 * 325.86845 * 5 4 2 7 7 H 1.09003 * 109.83279 * 261.84259 * 6 5 4 8 8 C 1.52998 * 109.83106 * 140.86880 * 6 5 4 9 9 C 1.53005 * 109.47190 * 175.41347 * 8 6 5 10 10 C 1.50700 * 109.46804 * 179.97438 * 9 8 6 11 11 O 1.21286 * 120.00241 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99741 * 180.02562 * 10 9 8 13 13 C 1.37103 * 120.00425 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99223 * 322.20454 * 13 12 10 15 15 C 1.38946 * 119.99944 * 142.20065 * 13 12 10 16 16 N 1.31420 * 119.99464 * 158.60676 * 15 13 12 17 17 Si 1.86795 * 120.00576 * 338.60123 * 15 13 12 18 18 H 1.48503 * 109.47046 * 95.99491 * 17 15 13 19 19 H 1.48494 * 109.47398 * 215.99198 * 17 15 13 20 20 H 1.48499 * 109.46935 * 335.99642 * 17 15 13 21 21 C 1.46509 * 120.00167 * 359.97438 * 12 10 9 22 22 C 1.50702 * 109.46880 * 83.23797 * 21 12 10 23 23 O 1.20829 * 119.99982 * 0.02562 * 22 21 12 24 24 O 1.34227 * 120.00340 * 180.02562 * 22 21 12 25 25 O 1.43243 * 107.58563 * 21.35705 * 6 5 4 26 26 H 1.09002 * 109.47103 * 180.63509 * 1 2 3 27 27 H 1.09006 * 109.46915 * 60.63913 * 1 2 3 28 28 H 1.08997 * 109.47453 * 300.63972 * 1 2 3 29 29 H 1.08997 * 111.12957 * 273.28422 * 4 2 1 30 30 H 1.09002 * 111.12296 * 37.44589 * 4 2 1 31 31 H 1.09003 * 110.85093 * 207.68058 * 5 4 2 32 32 H 1.08995 * 111.02245 * 84.13624 * 5 4 2 33 33 H 1.09007 * 109.46980 * 295.41498 * 8 6 5 34 34 H 1.08996 * 109.47110 * 55.41430 * 8 6 5 35 35 H 1.08995 * 109.46646 * 300.00038 * 9 8 6 36 36 H 1.08996 * 109.47026 * 60.00032 * 9 8 6 37 37 H 0.97003 * 119.99742 * 180.02562 * 16 15 13 38 38 H 1.08994 * 109.47534 * 203.23887 * 21 12 10 39 39 H 1.09001 * 109.46891 * 323.24321 * 21 12 10 40 40 H 0.96693 * 117.00543 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0226 0.0000 4 6 2.0678 -0.7742 1.2297 5 6 3.4699 -1.2031 0.7179 6 6 3.2113 -1.4412 -0.7854 7 1 3.0625 -2.5049 -0.9711 8 6 4.3992 -0.9309 -1.6036 9 6 4.1864 -1.2732 -3.0796 10 6 5.3562 -0.7700 -3.8855 11 8 6.2698 -0.1939 -3.3338 12 7 5.3865 -0.9592 -5.2196 13 6 6.4509 -0.5020 -5.9528 14 1 6.9140 0.4410 -5.7021 15 6 6.9339 -1.2517 -7.0183 16 7 7.6386 -0.6717 -7.9638 17 14 6.5816 -3.0841 -7.1068 18 1 5.3945 -3.3189 -7.9675 19 1 7.7566 -3.7869 -7.6817 20 1 6.3135 -3.6030 -5.7415 21 6 4.2826 -1.6546 -5.8862 22 6 3.1657 -0.6799 -6.1572 23 8 3.2802 0.4770 -5.8278 24 8 2.0436 -1.0968 -6.7645 25 8 2.0286 -0.7156 -1.1413 26 1 -0.3633 -1.0276 0.0114 27 1 -0.3633 0.5039 -0.8957 28 1 -0.3634 0.5237 0.8841 29 1 2.1495 -0.1223 2.0994 30 1 1.4470 -1.6429 1.4492 31 1 3.7966 -2.1216 1.2055 32 1 4.2000 -0.4072 0.8646 33 1 4.4815 0.1500 -1.4894 34 1 5.3147 -1.4045 -1.2492 35 1 4.1041 -2.3540 -3.1937 36 1 3.2709 -0.7996 -3.4340 37 1 7.9755 -1.1950 -8.7079 38 1 4.6342 -2.0754 -6.8281 39 1 3.9175 -2.4561 -5.2439 40 1 1.3553 -0.4351 -6.9174 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828221274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:43 Heat of formation + Delta-G solvation = -195.335975 kcal Electronic energy + Delta-G solvation = -23535.397901 eV Core-core repulsion = 19928.397052 eV Total energy + Delta-G solvation = -3607.000848 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.61524 -40.68002 -40.09970 -37.26524 -36.67207 -34.85833 -34.16383 -33.15862 -31.59993 -29.73475 -28.20884 -26.29801 -23.92135 -23.21429 -22.42058 -21.43197 -20.44286 -19.23585 -19.19542 -18.28891 -17.91155 -17.58267 -17.19687 -16.71706 -16.55167 -16.05033 -15.52797 -15.22772 -14.86250 -14.61528 -14.44439 -14.21949 -14.08102 -13.78005 -13.67946 -13.23882 -13.19108 -12.82982 -12.65244 -12.58494 -12.54730 -12.35576 -12.02043 -11.94344 -11.74567 -11.69795 -11.66036 -11.59017 -11.11243 -10.49910 -10.39787 -9.91967 -8.53877 -6.21896 1.16142 1.19762 1.34203 1.47838 1.65669 2.10178 2.18899 2.60603 2.88365 2.96738 3.58415 3.65533 3.84566 3.89725 3.94457 4.03632 4.18320 4.18977 4.31299 4.37811 4.43919 4.52046 4.62275 4.72762 4.79524 4.81965 4.93258 4.98387 5.08254 5.15790 5.25254 5.32628 5.38607 5.45960 5.60766 6.00028 6.22021 6.43215 6.85341 6.99540 7.17752 7.73609 8.63866 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.004854 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.242504 B = 5767.412721 C = 6395.814443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 H 0.054 0.946 4 C -0.140 4.140 5 C -0.151 4.151 6 C 0.082 3.918 7 H 0.100 0.900 8 C -0.105 4.105 9 C -0.125 4.125 10 C 0.470 3.530 11 O -0.604 6.604 12 N -0.466 5.466 13 C -0.339 4.339 14 H 0.034 0.966 15 C 0.008 3.992 16 N -0.910 5.910 17 Si 0.939 3.061 18 H -0.229 1.229 19 H -0.281 1.281 20 H -0.238 1.238 21 C 0.091 3.909 22 C 0.467 3.533 23 O -0.541 6.541 24 O -0.502 6.502 25 O -0.397 6.397 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.283 0.717 38 H 0.113 0.887 39 H 0.156 0.844 40 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.417 -9.093 13.721 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.002 3.998 3 H 0.072 0.928 4 C -0.177 4.177 5 C -0.188 4.188 6 C 0.025 3.975 7 H 0.118 0.882 8 C -0.143 4.143 9 C -0.164 4.164 10 C 0.262 3.738 11 O -0.487 6.487 12 N -0.188 5.188 13 C -0.467 4.467 14 H 0.052 0.948 15 C -0.195 4.195 16 N -0.547 5.547 17 Si 0.759 3.241 18 H -0.154 1.154 19 H -0.207 1.207 20 H -0.161 1.161 21 C -0.034 4.034 22 C 0.309 3.691 23 O -0.430 6.430 24 O -0.316 6.316 25 O -0.318 6.318 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.174 0.826 40 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -16.616 -8.754 13.766 23.285 hybrid contribution 0.390 0.837 -0.735 1.180 sum -16.226 -7.917 13.031 22.266 Atomic orbital electron populations 1.21858 0.92490 1.03123 1.02719 1.23170 0.95873 0.95302 0.85466 0.92772 1.23285 0.95453 1.01222 0.97784 1.23184 0.98272 1.03662 0.93721 1.22855 0.83876 0.96521 0.94270 0.88199 1.21664 0.98703 1.00924 0.92984 1.21651 0.95374 1.03561 0.95857 1.21458 0.88884 0.81417 0.82048 1.90511 1.41646 1.45743 1.70801 1.43442 1.16128 1.53831 1.05376 1.18579 1.10772 1.04749 1.12622 0.94763 1.26328 0.95314 1.04283 0.93534 1.69895 1.36402 1.38817 1.09590 0.85969 0.79635 0.77437 0.81071 1.15359 1.20702 1.16082 1.21808 0.85027 0.94113 1.02429 1.24312 0.83031 0.88617 0.73185 1.90729 1.80532 1.21577 1.50172 1.84474 1.27329 1.47529 1.72227 1.88438 1.42413 1.65160 1.35764 0.91437 0.93089 0.89394 0.88550 0.88864 0.87834 0.91191 0.93985 0.90382 0.86140 0.89655 0.90770 0.86949 0.82625 0.71287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.62 71.98 0.69 -1.64 16 2 C 0.06 1.21 4.07 31.26 0.13 1.34 16 3 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 4 C -0.14 -2.08 6.57 32.05 0.21 -1.87 16 5 C -0.15 -2.70 6.55 31.86 0.21 -2.49 16 6 C 0.08 1.93 3.52 31.06 0.11 2.04 16 7 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 8 C -0.10 -3.32 4.07 30.60 0.12 -3.20 16 9 C -0.12 -4.36 4.23 29.85 0.13 -4.23 16 10 C 0.47 23.09 7.37 87.66 0.65 23.73 16 11 O -0.60 -35.24 15.85 -3.05 -0.05 -35.28 16 12 N -0.47 -23.41 1.74 -639.59 -1.11 -24.53 16 13 C -0.34 -20.73 9.36 84.04 0.79 -19.94 16 14 H 0.03 2.51 7.92 -2.91 -0.02 2.49 16 15 C 0.01 0.43 5.28 84.92 0.45 0.87 16 16 N -0.91 -54.90 13.96 21.66 0.30 -54.59 16 17 Si 0.94 39.05 24.97 68.60 1.71 40.76 16 18 H -0.23 -8.04 6.72 99.48 0.67 -7.37 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.24 -9.09 7.11 99.48 0.71 -8.38 16 21 C 0.09 3.47 4.33 85.63 0.37 3.85 16 22 C 0.47 17.46 7.63 71.24 0.54 18.00 16 23 O -0.54 -25.38 17.00 21.95 0.37 -25.00 16 24 O -0.50 -13.15 13.42 -51.39 -0.69 -13.84 16 25 O -0.40 -10.64 10.32 -148.98 -1.54 -12.18 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.12 8.06 -2.39 -0.02 1.10 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.40 7.85 -2.39 -0.02 1.38 16 33 H 0.04 1.57 8.10 -2.38 -0.02 1.55 16 34 H 0.08 2.46 8.10 -2.39 -0.02 2.44 16 35 H 0.12 3.20 7.42 -2.39 -0.02 3.18 16 36 H 0.09 3.03 7.17 -2.39 -0.02 3.02 16 37 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.11 4.31 3.61 -2.39 -0.01 4.30 16 39 H 0.16 4.27 6.73 -2.39 -0.02 4.26 16 40 H 0.43 7.28 9.10 -74.06 -0.67 6.61 16 Total: -1.00 -85.22 330.14 3.73 -81.49 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.34 Total: 26.71 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 4.39 Total: 16.46 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -0.81 Total: -79.12 kcal Atomic # 8 Polarization: -84.40 SS G_CDS: -1.90 Total: -86.30 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.71 Total: 40.76 kcal Total: -85.22 3.73 -81.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828221274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.849 kcal (2) G-P(sol) polarization free energy of solvation -85.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds