Wall clock time and date at job start Tue Mar 31 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.27792 * 2 1 4 4 C 1.54948 * 110.39625 * 237.85350 * 2 1 3 5 5 C 1.55298 * 100.94706 * 204.59879 * 4 2 1 6 6 C 1.54380 * 102.25320 * 34.13124 * 5 4 2 7 7 H 1.08995 * 109.83119 * 98.25137 * 6 5 4 8 8 C 1.53005 * 109.83412 * 219.13343 * 6 5 4 9 9 C 1.52994 * 109.47519 * 184.99799 * 8 6 5 10 10 C 1.50700 * 109.47374 * 180.02562 * 9 8 6 11 11 O 1.21285 * 119.99741 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99819 * 180.02562 * 10 9 8 13 13 C 1.37098 * 119.99488 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00346 * 16.51416 * 13 12 10 15 15 C 1.38946 * 119.99833 * 196.50719 * 13 12 10 16 16 N 1.31413 * 119.99908 * 21.64252 * 15 13 12 17 17 Si 1.86804 * 120.00203 * 201.64477 * 15 13 12 18 18 H 1.48496 * 109.46960 * 60.00189 * 17 15 13 19 19 H 1.48499 * 109.47181 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46922 * 300.00058 * 17 15 13 21 21 C 1.46500 * 120.00205 * 359.97438 * 12 10 9 22 22 C 1.50708 * 109.46650 * 84.07280 * 21 12 10 23 23 O 1.20830 * 119.99934 * 359.97438 * 22 21 12 24 24 O 1.34221 * 119.99840 * 179.97438 * 22 21 12 25 25 O 1.43241 * 107.58780 * 338.64337 * 6 5 4 26 26 H 1.08992 * 109.47143 * 299.36003 * 1 2 3 27 27 H 1.09001 * 109.46883 * 59.36254 * 1 2 3 28 28 H 1.09008 * 109.46838 * 179.36161 * 1 2 3 29 29 H 1.09003 * 111.12246 * 86.67298 * 4 2 1 30 30 H 1.08999 * 111.12206 * 322.51620 * 4 2 1 31 31 H 1.09011 * 110.84725 * 275.94543 * 5 4 2 32 32 H 1.08995 * 110.85278 * 152.32384 * 5 4 2 33 33 H 1.08997 * 109.46943 * 305.00236 * 8 6 5 34 34 H 1.09001 * 109.46636 * 64.99902 * 8 6 5 35 35 H 1.09004 * 109.47071 * 300.00436 * 9 8 6 36 36 H 1.09000 * 109.46930 * 59.99846 * 9 8 6 37 37 H 0.96998 * 119.99931 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.46867 * 204.06725 * 21 12 10 39 39 H 1.08993 * 109.47052 * 324.07640 * 21 12 10 40 40 H 0.96698 * 117.00195 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0700 -0.7728 -1.2297 5 6 3.4722 -1.2001 -0.7169 6 6 3.2125 -1.4394 0.7859 7 1 3.0667 -2.5036 0.9711 8 6 4.3990 -0.9281 1.6056 9 6 4.1903 -1.2805 3.0797 10 6 5.3586 -0.7762 3.8871 11 8 6.2684 -0.1920 3.3375 12 7 5.3924 -0.9745 5.2198 13 6 6.4556 -0.5162 5.9541 14 1 7.1241 0.2209 5.5345 15 6 6.6728 -0.9999 7.2384 16 7 6.1640 -2.1564 7.5997 17 14 7.6882 -0.0064 8.4515 18 1 7.0456 1.3145 8.6696 19 1 7.7712 -0.7362 9.7421 20 1 9.0553 0.1921 7.9068 21 6 4.2932 -1.6796 5.8836 22 6 4.5165 -3.1666 5.7822 23 8 5.4934 -3.5934 5.2133 24 8 3.6303 -4.0168 6.3238 25 8 2.0286 -0.7157 1.1413 26 1 -0.3633 0.5038 0.8956 27 1 -0.3633 0.5237 -0.8842 28 1 -0.3633 -1.0277 -0.0115 29 1 2.1515 -0.1202 -2.0989 30 1 1.4506 -1.6422 -1.4503 31 1 4.1988 -0.4006 -0.8626 32 1 3.8006 -2.1178 -1.2048 33 1 5.3164 -1.3946 1.2468 34 1 4.4754 0.1539 1.4980 35 1 3.2728 -0.8139 3.4384 36 1 4.1138 -2.3624 3.1873 37 1 6.3160 -2.4943 8.4962 38 1 4.2562 -1.3886 6.9333 39 1 3.3510 -1.4200 5.4010 40 1 3.8164 -4.9614 6.2336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828221275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:47 Heat of formation + Delta-G solvation = -175.233093 kcal Electronic energy + Delta-G solvation = -23494.396045 eV Core-core repulsion = 19888.266923 eV Total energy + Delta-G solvation = -3606.129122 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.73086 -39.30764 -38.06526 -35.26007 -34.51646 -33.44715 -32.23968 -31.73834 -30.38430 -27.66225 -26.56143 -24.61778 -22.69003 -21.52406 -21.07339 -20.35005 -18.62578 -17.15149 -16.99214 -16.83486 -16.30162 -15.75223 -15.57824 -14.60228 -14.44867 -14.30146 -14.14198 -14.04628 -13.58213 -13.24230 -12.83023 -12.69369 -12.26070 -12.15710 -11.78265 -11.72791 -11.61410 -11.51261 -11.31216 -10.97477 -10.93459 -10.78839 -10.60787 -10.49763 -10.45048 -10.29772 -10.17952 -9.59995 -9.36734 -8.99972 -8.43152 -7.86359 -6.40960 -3.84477 3.19376 3.25919 3.30133 3.48991 3.70884 3.79467 4.12167 4.29085 4.47315 4.66005 4.67225 4.91701 5.08513 5.13271 5.17822 5.28160 5.44603 5.48545 5.54866 5.61765 5.69193 5.78858 5.84278 5.91102 5.96106 6.04195 6.09421 6.14715 6.28173 6.47748 6.60302 6.63147 6.69340 7.19523 7.51640 7.58464 8.04292 8.41946 9.06084 9.14063 9.36421 9.91288 10.68181 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023158 B = 0.004327 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.807050 B = 6469.869351 C = 6975.421498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 H 0.068 0.932 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.080 3.920 7 H 0.078 0.922 8 C -0.105 4.105 9 C -0.130 4.130 10 C 0.462 3.538 11 O -0.579 6.579 12 N -0.435 5.435 13 C -0.305 4.305 14 H 0.106 0.894 15 C 0.028 3.972 16 N -0.884 5.884 17 Si 0.929 3.071 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.146 3.854 22 C 0.490 3.510 23 O -0.505 6.505 24 O -0.535 6.535 25 O -0.372 6.372 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.270 0.730 38 H 0.127 0.873 39 H 0.079 0.921 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.017 -0.134 -10.667 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.016 3.984 3 H 0.086 0.914 4 C -0.190 4.190 5 C -0.189 4.189 6 C 0.023 3.977 7 H 0.096 0.904 8 C -0.143 4.143 9 C -0.170 4.170 10 C 0.252 3.748 11 O -0.463 6.463 12 N -0.155 5.155 13 C -0.432 4.432 14 H 0.124 0.876 15 C -0.174 4.174 16 N -0.524 5.524 17 Si 0.756 3.244 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.020 3.980 22 C 0.330 3.670 23 O -0.390 6.390 24 O -0.346 6.346 25 O -0.292 6.292 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.145 0.855 39 H 0.097 0.903 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -11.430 0.365 -10.676 15.645 hybrid contribution 0.811 -0.577 0.632 1.179 sum -10.619 -0.212 -10.044 14.618 Atomic orbital electron populations 1.21873 0.94030 1.02598 1.02207 1.22926 0.94566 0.95767 0.85165 0.91412 1.23309 0.96526 1.00717 0.98410 1.23174 0.97513 1.02760 0.95477 1.22836 0.85605 0.96027 0.93276 0.90428 1.21640 0.96528 1.02327 0.93851 1.21523 0.98448 1.01493 0.95550 1.20161 0.88522 0.84113 0.82018 1.90502 1.39989 1.46009 1.69782 1.43456 1.18496 1.48374 1.05174 1.19665 1.06942 1.21116 0.95494 0.87596 1.25214 0.98252 0.95117 0.98825 1.69801 1.46606 1.15648 1.20333 0.85949 0.80032 0.79501 0.78960 1.19870 1.21058 1.19889 1.20667 0.89807 0.84937 1.02635 1.23888 0.79444 0.90252 0.73423 1.90609 1.28200 1.78660 1.41547 1.84530 1.53148 1.21327 1.75546 1.88461 1.42140 1.64815 1.33757 0.91823 0.91597 0.92074 0.90275 0.90527 0.90160 0.90163 0.90525 0.90985 0.89836 0.90804 0.91929 0.85508 0.90311 0.75266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.63 37.16 0.36 -1.00 16 2 C 0.07 0.81 4.07 -25.71 -0.10 0.71 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.15 -1.41 6.57 -24.48 -0.16 -1.57 16 5 C -0.15 -1.65 6.54 -24.79 -0.16 -1.81 16 6 C 0.08 1.10 3.51 -26.01 -0.09 1.01 16 7 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 8 C -0.11 -1.80 4.07 -26.73 -0.11 -1.91 16 9 C -0.13 -2.53 4.22 -27.89 -0.12 -2.65 16 10 C 0.46 11.59 7.41 -10.98 -0.08 11.50 16 11 O -0.58 -16.31 15.62 5.55 0.09 -16.23 16 12 N -0.44 -11.27 2.18 -116.10 -0.25 -11.52 16 13 C -0.30 -8.57 9.34 -14.93 -0.14 -8.71 16 14 H 0.11 3.12 7.37 -52.49 -0.39 2.73 16 15 C 0.03 0.75 4.87 -17.47 -0.09 0.66 16 16 N -0.88 -23.62 9.28 55.50 0.52 -23.10 16 17 Si 0.93 20.84 29.61 -169.99 -5.03 15.81 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 19 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 C 0.15 3.27 4.97 -5.19 -0.03 3.24 16 22 C 0.49 11.07 5.86 36.01 0.21 11.28 16 23 O -0.50 -13.35 16.79 -18.75 -0.31 -13.66 16 24 O -0.53 -9.80 13.42 -39.23 -0.53 -10.32 16 25 O -0.37 -5.35 10.34 -35.23 -0.36 -5.72 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 31 H 0.08 0.88 7.85 -51.92 -0.41 0.47 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 34 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 35 H 0.08 1.50 7.17 -51.93 -0.37 1.13 16 36 H 0.07 1.43 7.52 -51.93 -0.39 1.03 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.13 2.93 6.37 -51.93 -0.33 2.60 16 39 H 0.08 1.46 6.69 -51.93 -0.35 1.11 16 40 H 0.39 5.51 9.10 45.56 0.41 5.92 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -34.25 331.26 -6.58 -40.83 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.17 Total: 8.15 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -0.51 Total: 10.76 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.26 Total: -34.62 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -1.12 Total: -45.93 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.25 -6.58 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828221275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.403 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds