Wall clock time and date at job start Tue Mar 31 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.27792 * 2 1 4 4 C 1.54948 * 110.39625 * 237.85350 * 2 1 3 5 5 C 1.55298 * 100.94706 * 204.59879 * 4 2 1 6 6 C 1.54380 * 102.25320 * 34.13124 * 5 4 2 7 7 H 1.08995 * 109.83119 * 98.25137 * 6 5 4 8 8 C 1.53005 * 109.83412 * 219.13343 * 6 5 4 9 9 C 1.52994 * 109.47519 * 184.99799 * 8 6 5 10 10 C 1.50700 * 109.47374 * 180.02562 * 9 8 6 11 11 O 1.21285 * 119.99741 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99819 * 180.02562 * 10 9 8 13 13 C 1.37098 * 119.99488 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00346 * 16.51416 * 13 12 10 15 15 C 1.38946 * 119.99833 * 196.50719 * 13 12 10 16 16 N 1.31413 * 119.99908 * 21.64252 * 15 13 12 17 17 Si 1.86804 * 120.00203 * 201.64477 * 15 13 12 18 18 H 1.48496 * 109.46960 * 60.00189 * 17 15 13 19 19 H 1.48499 * 109.47181 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46922 * 300.00058 * 17 15 13 21 21 C 1.46500 * 120.00205 * 359.97438 * 12 10 9 22 22 C 1.50708 * 109.46650 * 84.07280 * 21 12 10 23 23 O 1.20830 * 119.99934 * 359.97438 * 22 21 12 24 24 O 1.34221 * 119.99840 * 179.97438 * 22 21 12 25 25 O 1.43241 * 107.58780 * 338.64337 * 6 5 4 26 26 H 1.08992 * 109.47143 * 299.36003 * 1 2 3 27 27 H 1.09001 * 109.46883 * 59.36254 * 1 2 3 28 28 H 1.09008 * 109.46838 * 179.36161 * 1 2 3 29 29 H 1.09003 * 111.12246 * 86.67298 * 4 2 1 30 30 H 1.08999 * 111.12206 * 322.51620 * 4 2 1 31 31 H 1.09011 * 110.84725 * 275.94543 * 5 4 2 32 32 H 1.08995 * 110.85278 * 152.32384 * 5 4 2 33 33 H 1.08997 * 109.46943 * 305.00236 * 8 6 5 34 34 H 1.09001 * 109.46636 * 64.99902 * 8 6 5 35 35 H 1.09004 * 109.47071 * 300.00436 * 9 8 6 36 36 H 1.09000 * 109.46930 * 59.99846 * 9 8 6 37 37 H 0.96998 * 119.99931 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.46867 * 204.06725 * 21 12 10 39 39 H 1.08993 * 109.47052 * 324.07640 * 21 12 10 40 40 H 0.96698 * 117.00195 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0700 -0.7728 -1.2297 5 6 3.4722 -1.2001 -0.7169 6 6 3.2125 -1.4394 0.7859 7 1 3.0667 -2.5036 0.9711 8 6 4.3990 -0.9281 1.6056 9 6 4.1903 -1.2805 3.0797 10 6 5.3586 -0.7762 3.8871 11 8 6.2684 -0.1920 3.3375 12 7 5.3924 -0.9745 5.2198 13 6 6.4556 -0.5162 5.9541 14 1 7.1241 0.2209 5.5345 15 6 6.6728 -0.9999 7.2384 16 7 6.1640 -2.1564 7.5997 17 14 7.6882 -0.0064 8.4515 18 1 7.0456 1.3145 8.6696 19 1 7.7712 -0.7362 9.7421 20 1 9.0553 0.1921 7.9068 21 6 4.2932 -1.6796 5.8836 22 6 4.5165 -3.1666 5.7822 23 8 5.4934 -3.5934 5.2133 24 8 3.6303 -4.0168 6.3238 25 8 2.0286 -0.7157 1.1413 26 1 -0.3633 0.5038 0.8956 27 1 -0.3633 0.5237 -0.8842 28 1 -0.3633 -1.0277 -0.0115 29 1 2.1515 -0.1202 -2.0989 30 1 1.4506 -1.6422 -1.4503 31 1 4.1988 -0.4006 -0.8626 32 1 3.8006 -2.1178 -1.2048 33 1 5.3164 -1.3946 1.2468 34 1 4.4754 0.1539 1.4980 35 1 3.2728 -0.8139 3.4384 36 1 4.1138 -2.3624 3.1873 37 1 6.3160 -2.4943 8.4962 38 1 4.2562 -1.3886 6.9333 39 1 3.3510 -1.4200 5.4010 40 1 3.8164 -4.9614 6.2336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828221275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:47 Heat of formation + Delta-G solvation = -198.715429 kcal Electronic energy + Delta-G solvation = -23495.414315 eV Core-core repulsion = 19888.266923 eV Total energy + Delta-G solvation = -3607.147392 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29374 -40.59521 -39.87723 -37.07222 -36.38212 -34.78932 -33.71799 -33.14791 -31.51927 -29.51046 -27.94485 -26.26851 -23.97650 -22.81096 -22.40898 -21.44300 -20.42728 -19.03349 -18.70356 -18.09926 -17.92294 -17.41160 -16.85899 -16.38367 -16.23510 -15.90202 -15.79383 -15.18655 -14.61036 -14.48183 -14.43106 -13.91763 -13.62473 -13.49702 -13.40219 -13.17192 -13.14935 -12.74071 -12.58417 -12.55876 -12.38031 -12.20853 -12.14646 -11.95977 -11.73800 -11.65316 -11.57461 -11.51159 -10.96223 -10.44832 -10.38271 -9.87677 -8.44416 -5.95997 1.37617 1.41925 1.53012 1.69408 1.87468 2.26017 2.53334 2.86409 2.95205 3.11280 3.62603 3.70410 3.89061 3.99197 4.12113 4.22165 4.23313 4.34525 4.41151 4.54442 4.63598 4.72266 4.75817 4.79794 4.84174 4.92965 4.94063 4.99652 5.09986 5.17293 5.27036 5.35468 5.38969 5.44455 5.94419 6.00978 6.22570 6.38869 7.09946 7.29840 7.45321 7.93275 8.62457 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023158 B = 0.004327 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.807050 B = 6469.869351 C = 6975.421498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.060 3.940 3 H 0.063 0.937 4 C -0.141 4.141 5 C -0.151 4.151 6 C 0.084 3.916 7 H 0.084 0.916 8 C -0.100 4.100 9 C -0.115 4.115 10 C 0.446 3.554 11 O -0.624 6.624 12 N -0.447 5.447 13 C -0.345 4.345 14 H 0.078 0.922 15 C 0.000 4.000 16 N -0.893 5.893 17 Si 0.993 3.007 18 H -0.262 1.262 19 H -0.272 1.272 20 H -0.282 1.282 21 C 0.142 3.858 22 C 0.498 3.502 23 O -0.549 6.549 24 O -0.517 6.517 25 O -0.394 6.394 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.275 0.725 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.842 -0.645 -10.875 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.003 3.997 3 H 0.081 0.919 4 C -0.178 4.178 5 C -0.188 4.188 6 C 0.026 3.974 7 H 0.102 0.898 8 C -0.138 4.138 9 C -0.155 4.155 10 C 0.238 3.762 11 O -0.511 6.511 12 N -0.166 5.166 13 C -0.473 4.473 14 H 0.095 0.905 15 C -0.202 4.202 16 N -0.532 5.532 17 Si 0.817 3.183 18 H -0.187 1.187 19 H -0.196 1.196 20 H -0.208 1.208 21 C 0.017 3.983 22 C 0.341 3.659 23 O -0.438 6.438 24 O -0.330 6.330 25 O -0.314 6.314 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -13.317 -0.182 -10.861 17.186 hybrid contribution 1.345 -0.467 0.747 1.607 sum -11.972 -0.649 -10.114 15.686 Atomic orbital electron populations 1.21863 0.92451 1.02965 1.02960 1.23201 0.95864 0.95519 0.85138 0.91902 1.23296 0.95137 1.01247 0.98139 1.23179 0.98642 1.03514 0.93502 1.22752 0.84172 0.95963 0.94484 0.89793 1.21597 0.97918 1.01335 0.92945 1.21464 0.96495 1.01439 0.96098 1.21144 0.89585 0.83342 0.82169 1.90455 1.42051 1.47928 1.70647 1.43638 1.18748 1.48526 1.05650 1.19598 1.08432 1.22232 0.97002 0.90453 1.25975 0.99050 0.95708 0.99448 1.69878 1.46672 1.15990 1.20679 0.85007 0.77935 0.78577 0.76829 1.18696 1.19615 1.20772 1.20823 0.90273 0.84862 1.02367 1.23786 0.78937 0.90705 0.72517 1.90601 1.30165 1.79438 1.43633 1.84450 1.51464 1.22811 1.74228 1.88431 1.42036 1.65164 1.35787 0.92634 0.89286 0.91892 0.88202 0.89294 0.90697 0.88507 0.91898 0.92500 0.88055 0.90315 0.91507 0.86276 0.86381 0.72673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.63 71.98 0.69 -1.62 16 2 C 0.06 1.22 4.07 31.26 0.13 1.35 16 3 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.14 -2.23 6.57 32.05 0.21 -2.01 16 5 C -0.15 -3.01 6.54 31.85 0.21 -2.80 16 6 C 0.08 2.22 3.51 31.06 0.11 2.33 16 7 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 8 C -0.10 -3.46 4.07 30.59 0.12 -3.33 16 9 C -0.12 -4.49 4.22 29.85 0.13 -4.37 16 10 C 0.45 23.06 7.41 87.66 0.65 23.71 16 11 O -0.62 -36.90 15.62 -3.05 -0.05 -36.95 16 12 N -0.45 -23.61 2.18 -639.61 -1.39 -25.00 16 13 C -0.35 -20.00 9.34 84.04 0.79 -19.22 16 14 H 0.08 4.81 7.37 -2.91 -0.02 4.79 16 15 C 0.00 -0.02 4.87 84.93 0.41 0.39 16 16 N -0.89 -47.33 9.28 21.66 0.20 -47.13 16 17 Si 0.99 42.78 29.61 68.60 2.03 44.81 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 C 0.14 6.28 4.97 85.64 0.43 6.70 16 22 C 0.50 22.06 5.86 71.24 0.42 22.48 16 23 O -0.55 -29.07 16.79 21.95 0.37 -28.70 16 24 O -0.52 -17.75 13.42 -51.33 -0.69 -18.44 16 25 O -0.39 -10.82 10.34 -148.98 -1.54 -12.36 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.22 8.06 -2.39 -0.02 1.20 16 31 H 0.07 1.57 7.85 -2.38 -0.02 1.56 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 33 H 0.06 2.32 8.10 -2.39 -0.02 2.30 16 34 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 35 H 0.10 3.56 7.17 -2.39 -0.02 3.54 16 36 H 0.08 3.00 7.52 -2.39 -0.02 2.99 16 37 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 38 H 0.12 5.44 6.37 -2.39 -0.02 5.42 16 39 H 0.12 4.17 6.69 -2.39 -0.02 4.15 16 40 H 0.41 10.56 9.10 -74.06 -0.67 9.89 16 Total: -1.00 -76.02 331.26 3.60 -72.42 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.38 Total: 27.76 kcal Atomic # 6 Polarization: 19.31 SS G_CDS: 4.29 Total: 23.60 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -1.19 Total: -72.14 kcal Atomic # 8 Polarization: -94.55 SS G_CDS: -1.91 Total: -96.46 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -76.02 3.60 -72.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828221275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.295 kcal (2) G-P(sol) polarization free energy of solvation -76.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds