Wall clock time and date at job start Tue Mar 31 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99602 * 2 1 4 4 C 1.53003 * 109.46903 * 179.97438 * 3 2 1 5 5 C 1.52998 * 115.54753 * 63.50959 * 4 3 2 6 6 C 1.50698 * 109.47526 * 65.55748 * 5 4 3 7 7 O 1.20825 * 119.99935 * 5.64206 * 6 5 4 8 8 O 1.34226 * 120.00124 * 185.64544 * 6 5 4 9 9 C 1.45203 * 116.99768 * 179.97438 * 8 6 5 10 10 C 1.50705 * 109.46933 * 179.97438 * 9 8 6 11 11 O 1.21284 * 119.99931 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00164 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00218 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.46980 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00133 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99593 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99887 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00362 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47102 * 90.00132 * 18 16 14 20 20 H 1.48497 * 109.47208 * 210.00109 * 18 16 14 21 21 H 1.48499 * 109.47282 * 330.00228 * 18 16 14 22 22 C 1.52997 * 117.49965 * 277.83680 * 4 3 2 23 23 C 1.53001 * 117.49675 * 209.17528 * 4 3 2 24 24 H 1.09000 * 109.47334 * 299.99962 * 1 2 3 25 25 H 1.08996 * 109.47598 * 59.99908 * 1 2 3 26 26 H 1.09007 * 109.47041 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47248 * 300.00078 * 3 2 1 28 28 H 1.09000 * 109.47555 * 60.00338 * 3 2 1 29 29 H 1.09005 * 109.46910 * 185.55291 * 5 4 3 30 30 H 1.08999 * 109.47298 * 305.55309 * 5 4 3 31 31 H 1.08996 * 109.47752 * 299.99960 * 9 8 6 32 32 H 1.09003 * 109.46962 * 60.00619 * 9 8 6 33 33 H 0.97000 * 119.99705 * 0.02562 * 12 10 9 34 34 H 1.08989 * 109.47444 * 300.00721 * 13 12 10 35 35 H 1.09003 * 109.46555 * 60.00789 * 13 12 10 36 36 H 0.97001 * 120.00257 * 179.97438 * 17 16 14 37 37 H 1.08997 * 117.50025 * 359.97438 * 22 4 3 38 38 H 1.08997 * 117.49556 * 145.02281 * 22 4 3 39 39 H 1.09001 * 117.49618 * 214.97757 * 23 4 3 40 40 H 1.09000 * 117.49940 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1451 0.5186 -1.2345 6 6 3.8993 1.3829 -2.4443 7 8 3.3892 2.4707 -2.3161 8 8 4.2469 0.9442 -3.6643 9 6 3.9800 1.8295 -4.7838 10 6 4.4343 1.1735 -6.0623 11 8 4.9334 0.0685 -6.0328 12 7 4.2851 1.8143 -7.2385 13 6 4.7262 1.1764 -8.4814 14 6 4.4492 2.0953 -9.6434 15 1 3.9909 3.0583 -9.4730 16 6 4.7810 1.7065 -10.9239 17 7 4.5399 2.5085 -11.9379 18 14 5.5731 0.0406 -11.2186 19 1 4.5159 -0.9761 -11.4504 20 1 6.4566 0.1164 -12.4097 21 1 6.3765 -0.3428 -10.0300 22 6 4.2245 0.9447 1.3454 23 6 4.3328 2.3104 0.6624 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6885 1.8464 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 5.2182 0.3951 -1.0882 30 1 3.6842 -0.4575 -1.3856 31 1 2.9106 2.0328 -4.8395 32 1 4.5210 2.7654 -4.6440 33 1 3.8855 2.6979 -7.2621 34 1 5.7956 0.9735 -8.4259 35 1 4.1854 0.2404 -8.6211 36 1 4.7736 2.2352 -12.8388 37 1 3.5913 0.8733 2.2297 38 1 5.1124 0.3126 1.3501 39 1 5.2921 2.5760 0.2181 40 1 3.7709 3.1367 1.0976 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829891363.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:35 Heat of formation + Delta-G solvation = -167.429110 kcal Electronic energy + Delta-G solvation = -22029.527502 eV Core-core repulsion = 18423.736786 eV Total energy + Delta-G solvation = -3605.790716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.82950 -40.55232 -39.56850 -37.81963 -37.22291 -36.21208 -34.47327 -31.68782 -30.63292 -29.08081 -28.44635 -26.42239 -24.24565 -23.32889 -22.65730 -21.73489 -20.23510 -19.33130 -18.78987 -18.12731 -17.94325 -17.37360 -17.04743 -16.90174 -16.77486 -16.52167 -16.13574 -15.73965 -15.31915 -14.83315 -14.80814 -14.45616 -14.33439 -13.87152 -13.70244 -13.31631 -13.16506 -13.08978 -12.71380 -12.55876 -12.36923 -12.09008 -11.93930 -11.88878 -11.77916 -11.67771 -11.23122 -10.99888 -10.93126 -10.88784 -10.54879 -10.05615 -8.40809 -6.48543 1.12551 1.24926 1.33536 1.36750 1.47675 1.50502 2.27753 2.40424 2.62466 2.94561 3.10013 3.57722 3.62359 3.69626 3.86486 3.91848 4.03761 4.04659 4.16808 4.38154 4.45772 4.52295 4.57150 4.69665 4.73613 4.79775 4.81455 4.84260 4.99353 5.03344 5.06288 5.22024 5.26408 5.32451 5.39258 6.04824 6.18701 6.50864 6.61609 6.72723 7.10540 7.26033 8.73763 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031444 B = 0.002701 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.272011 B =10363.063208 C =10535.539656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.096 3.904 4 C -0.137 4.137 5 C -0.070 4.070 6 C 0.463 3.537 7 O -0.520 6.520 8 O -0.350 6.350 9 C 0.059 3.941 10 C 0.504 3.496 11 O -0.578 6.578 12 N -0.697 5.697 13 C 0.232 3.768 14 C -0.548 4.548 15 H 0.061 0.939 16 C 0.027 3.973 17 N -0.931 5.931 18 Si 0.938 3.062 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.142 4.142 23 C -0.155 4.155 24 H 0.054 0.946 25 H 0.038 0.962 26 H 0.098 0.902 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.130 0.870 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.413 0.587 34 H 0.018 0.982 35 H 0.016 0.984 36 H 0.273 0.727 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.052 -2.123 28.595 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C 0.020 3.980 4 C -0.137 4.137 5 C -0.107 4.107 6 C 0.307 3.693 7 O -0.409 6.409 8 O -0.266 6.266 9 C -0.018 4.018 10 C 0.290 3.710 11 O -0.458 6.458 12 N -0.349 5.349 13 C 0.109 3.891 14 C -0.586 4.586 15 H 0.079 0.921 16 C -0.174 4.174 17 N -0.569 5.569 18 Si 0.761 3.239 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.179 4.179 23 C -0.192 4.192 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.116 0.884 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.148 0.852 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.249 0.751 34 H 0.036 0.964 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.732 -2.706 28.402 28.774 hybrid contribution -0.296 0.342 -1.008 1.105 sum -4.028 -2.364 27.394 27.789 Atomic orbital electron populations 1.22896 0.79849 1.03790 1.00512 1.87827 1.20960 1.28335 1.95531 1.22020 0.90944 0.84378 1.00675 1.21007 0.92656 1.06131 0.93901 1.20948 1.04949 0.98567 0.86238 1.24383 0.74059 0.86480 0.84342 1.90629 1.40853 1.22902 1.86528 1.86570 1.76216 1.47906 1.15939 1.22683 1.04367 0.92958 0.81804 1.20611 0.79011 0.85841 0.85543 1.90679 1.45891 1.21650 1.87589 1.45868 1.61669 1.21634 1.05696 1.19176 0.94753 0.93503 0.81695 1.21268 1.42343 1.03967 0.91043 0.92070 1.25601 0.95339 1.00906 0.95550 1.69979 1.48253 1.38579 1.00108 0.85855 0.79518 0.79891 0.78636 1.18965 1.19860 1.18274 1.23182 1.02448 0.98725 0.93532 1.23092 1.01206 0.92521 1.02423 0.92776 0.94360 0.88397 0.93708 0.91830 0.85172 0.86514 0.86283 0.85968 0.75107 0.96449 0.96617 0.91794 0.87476 0.86863 0.88043 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -7.97 10.54 -148.98 -1.57 -9.54 16 3 C 0.10 1.75 5.55 71.98 0.40 2.14 16 4 C -0.14 -2.23 1.27 -52.18 -0.07 -2.29 16 5 C -0.07 -1.26 5.63 29.85 0.17 -1.09 16 6 C 0.46 11.37 7.75 71.24 0.55 11.93 16 7 O -0.52 -14.04 14.33 21.97 0.31 -13.72 16 8 O -0.35 -10.26 9.76 -45.03 -0.44 -10.70 16 9 C 0.06 1.63 5.94 71.24 0.42 2.05 16 10 C 0.50 18.86 7.91 87.66 0.69 19.55 16 11 O -0.58 -26.61 16.50 15.75 0.26 -26.35 16 12 N -0.70 -27.25 5.55 -466.79 -2.59 -29.84 16 13 C 0.23 11.20 4.50 85.63 0.38 11.58 16 14 C -0.55 -29.85 9.83 25.60 0.25 -29.60 16 15 H 0.06 3.49 7.84 -2.91 -0.02 3.46 16 16 C 0.03 1.49 5.47 84.65 0.46 1.95 16 17 N -0.93 -55.18 13.96 21.45 0.30 -54.88 16 18 Si 0.94 43.56 27.47 68.60 1.88 45.44 16 19 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.26 -11.86 6.54 99.48 0.65 -11.21 16 22 C -0.14 -1.60 9.94 30.62 0.30 -1.30 16 23 C -0.16 -2.08 9.83 30.62 0.30 -1.78 16 24 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.04 0.98 6.67 -2.39 -0.02 0.96 16 28 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 29 H 0.13 1.76 8.09 -2.38 -0.02 1.74 16 30 H 0.12 2.12 8.05 -2.39 -0.02 2.10 16 31 H 0.12 2.82 8.13 -2.39 -0.02 2.80 16 32 H 0.12 2.83 8.13 -2.39 -0.02 2.81 16 33 H 0.41 13.78 8.32 -92.71 -0.77 13.01 16 34 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 35 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 36 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -71.73 346.90 3.50 -68.23 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.22 Total: 16.62 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 5.12 Total: 14.76 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -2.29 Total: -84.72 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: -1.43 Total: -60.32 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Total: -71.73 3.50 -68.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829891363.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.199 kcal (2) G-P(sol) polarization free energy of solvation -71.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds