Wall clock time and date at job start Tue Mar 31 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46493 * 120.00095 * 2 1 4 4 C 1.53004 * 109.47206 * 270.00047 * 3 2 1 5 5 C 1.53001 * 109.46858 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46659 * 180.02562 * 5 4 3 7 7 O 1.20825 * 120.00623 * 5.58601 * 6 5 4 8 8 O 1.34232 * 119.99959 * 185.59248 * 6 5 4 9 9 C 1.45196 * 117.00079 * 185.16419 * 8 6 5 10 10 C 1.53005 * 109.47073 * 183.73532 * 9 8 6 11 11 C 1.50702 * 115.54932 * 294.97291 * 10 9 8 12 12 H 1.08004 * 119.99921 * 114.84801 * 11 10 9 13 13 C 1.37879 * 119.99870 * 294.56620 * 11 10 9 14 14 N 1.31511 * 119.99925 * 174.21630 * 13 11 10 15 15 Si 1.86795 * 119.99867 * 354.21411 * 13 11 10 16 16 H 1.48499 * 109.47355 * 93.36751 * 15 13 11 17 17 H 1.48506 * 109.46971 * 213.36721 * 15 13 11 18 18 H 1.48502 * 109.47600 * 333.36652 * 15 13 11 19 19 C 1.53006 * 117.49887 * 80.63932 * 10 9 8 20 20 C 1.52999 * 117.49803 * 149.30145 * 10 9 8 21 21 C 1.34780 * 119.99918 * 180.02562 * 2 1 3 22 22 O 1.21508 * 119.99663 * 180.02562 * 21 2 1 23 23 O 1.34637 * 120.00068 * 359.97438 * 21 2 1 24 24 H 1.09004 * 109.47144 * 90.00227 * 1 2 3 25 25 H 1.09007 * 109.47036 * 209.99722 * 1 2 3 26 26 H 1.08994 * 109.47193 * 329.99516 * 1 2 3 27 27 H 1.08996 * 109.47569 * 150.00128 * 3 2 1 28 28 H 1.09006 * 109.47234 * 30.00047 * 3 2 1 29 29 H 1.08998 * 109.47026 * 60.00091 * 4 3 2 30 30 H 1.08994 * 109.47042 * 299.99768 * 4 3 2 31 31 H 1.08996 * 109.47505 * 60.00333 * 5 4 3 32 32 H 1.09000 * 109.47716 * 299.99643 * 5 4 3 33 33 H 1.09000 * 109.47512 * 63.73722 * 9 8 6 34 34 H 1.08995 * 109.47012 * 303.73099 * 9 8 6 35 35 H 0.96993 * 120.00026 * 180.02562 * 14 13 11 36 36 H 1.09002 * 117.49972 * 215.00287 * 19 10 9 37 37 H 1.09004 * 117.49442 * 0.02635 * 19 10 9 38 38 H 1.08997 * 117.50233 * 359.97438 * 20 10 9 39 39 H 1.08998 * 117.49960 * 144.97886 * 20 10 9 40 40 H 0.96702 * 116.99763 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2170 3.0357 -1.4424 6 6 3.4676 3.4710 -2.8633 7 8 2.9892 2.8461 -3.7800 8 8 4.2224 4.5531 -3.1105 9 6 4.3272 4.9818 -4.4937 10 6 5.2949 6.1631 -4.5897 11 6 4.8530 7.4236 -3.8919 12 1 5.4110 7.7962 -3.0455 13 6 3.7398 8.1043 -4.3375 14 7 3.2873 9.1382 -3.6624 15 14 2.8744 7.5578 -5.9001 16 1 1.7714 6.6254 -5.5549 17 1 2.3190 8.7445 -6.5992 18 1 3.8448 6.8692 -6.7886 19 6 6.7925 5.8503 -4.6020 20 6 6.0969 6.3159 -5.8836 21 6 2.1389 -1.1672 -0.0005 22 8 3.3540 -1.1672 -0.0001 23 8 1.4657 -2.3332 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 3.1499 1.1384 0.5138 28 1 1.6084 2.0284 0.5139 29 1 1.5001 1.8407 -1.9563 30 1 3.0416 0.9508 -1.9563 31 1 4.1694 2.9058 -0.9285 32 1 2.6276 3.7952 -0.9288 33 1 3.3450 5.2865 -4.8551 34 1 4.6987 4.1575 -5.1024 35 1 2.5040 9.6168 -3.9756 36 1 7.4582 6.5562 -4.1053 37 1 7.0884 4.8029 -4.5421 38 1 5.9356 5.5748 -6.6663 39 1 6.3047 7.3282 -6.2303 40 1 1.9924 -3.1442 -0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830768530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:41 Heat of formation + Delta-G solvation = -173.808794 kcal Electronic energy + Delta-G solvation = -22385.216988 eV Core-core repulsion = 18779.149628 eV Total energy + Delta-G solvation = -3606.067360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.56831 -41.31694 -38.90561 -37.84832 -37.04878 -36.74710 -34.40639 -34.29480 -29.78849 -28.59384 -27.56169 -27.03373 -24.22707 -23.26121 -21.78074 -21.45353 -21.05294 -19.17440 -18.82641 -18.63800 -18.28978 -17.74520 -17.15561 -17.08332 -16.78153 -15.94033 -15.73622 -15.38624 -14.92535 -14.67158 -14.59646 -14.21861 -14.03485 -13.79727 -13.48462 -13.22124 -13.02757 -12.89046 -12.78272 -12.70988 -12.53902 -12.28753 -12.13723 -11.81526 -11.74414 -11.68103 -11.61106 -11.37931 -10.99945 -10.64184 -10.40796 -9.90994 -8.31754 -6.35669 1.19126 1.28057 1.32828 1.34385 1.45050 1.71192 1.83210 2.31949 2.95514 3.25327 3.34283 3.66479 3.89381 3.94612 3.96120 4.12032 4.18490 4.29949 4.38170 4.40766 4.43489 4.53807 4.65336 4.68556 4.71984 4.85806 4.95329 4.96578 4.99396 5.16584 5.19061 5.39751 5.46098 5.61893 5.65933 5.76318 6.20813 6.29059 6.68370 6.78471 7.30348 7.34262 8.83844 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025916 B = 0.003289 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.168812 B = 8510.196541 C = 8923.521303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.596 5.596 3 C 0.133 3.867 4 C -0.116 4.116 5 C -0.104 4.104 6 C 0.448 3.552 7 O -0.552 6.552 8 O -0.346 6.346 9 C 0.109 3.891 10 C -0.042 4.042 11 C -0.477 4.477 12 H 0.038 0.962 13 C 0.028 3.972 14 N -0.942 5.942 15 Si 0.916 3.084 16 H -0.283 1.283 17 H -0.287 1.287 18 H -0.221 1.221 19 C -0.158 4.158 20 C -0.170 4.170 21 C 0.657 3.343 22 O -0.618 6.618 23 O -0.518 6.518 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.126 0.874 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.266 0.734 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 -19.609 7.371 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.337 5.337 3 C 0.011 3.989 4 C -0.155 4.155 5 C -0.141 4.141 6 C 0.293 3.707 7 O -0.444 6.444 8 O -0.262 6.262 9 C 0.036 3.964 10 C -0.043 4.043 11 C -0.515 4.515 12 H 0.056 0.944 13 C -0.170 4.170 14 N -0.581 5.581 15 Si 0.740 3.260 16 H -0.210 1.210 17 H -0.213 1.213 18 H -0.143 1.143 19 C -0.195 4.195 20 C -0.207 4.207 21 C 0.411 3.589 22 O -0.510 6.510 23 O -0.330 6.330 24 H 0.075 0.925 25 H 0.104 0.896 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges -5.945 -19.342 7.088 21.441 hybrid contribution -0.275 -0.250 -0.906 0.979 sum -6.220 -19.592 6.182 21.465 Atomic orbital electron populations 1.22025 0.76303 1.05131 1.02876 1.46752 1.08708 1.02998 1.75205 1.21625 0.98765 0.83007 0.95476 1.21696 1.00654 0.94783 0.98330 1.21406 1.05303 0.99198 0.88234 1.24718 0.74177 0.77383 0.94396 1.90590 1.49685 1.55501 1.48628 1.86596 1.63533 1.43804 1.32230 1.22747 0.99096 0.95692 0.78897 1.19252 0.91237 0.93377 1.00400 1.20369 1.11130 1.05990 1.13962 0.94408 1.25655 0.97190 0.94643 0.99549 1.70018 1.25133 1.22255 1.40740 0.86237 0.79752 0.78119 0.81850 1.20969 1.21335 1.14342 1.22858 0.94480 1.01161 1.00972 1.23138 1.04524 1.02139 0.90915 1.17981 0.83036 0.82278 0.75582 1.91040 1.14356 1.87656 1.57973 1.84158 1.44600 1.16280 1.87914 0.92469 0.89641 0.88236 0.89552 0.85650 0.91100 0.93379 0.85520 0.84721 0.94036 0.91389 0.92448 0.89574 0.88195 0.88336 0.89277 0.69375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.49 127.77 1.34 2.17 16 2 N -0.60 -10.22 2.87 -977.25 -2.81 -13.03 16 3 C 0.13 2.14 5.45 86.38 0.47 2.61 16 4 C -0.12 -2.55 4.85 30.60 0.15 -2.40 16 5 C -0.10 -2.45 5.81 29.85 0.17 -2.27 16 6 C 0.45 16.11 7.94 71.24 0.57 16.68 16 7 O -0.55 -22.51 15.66 21.97 0.34 -22.17 16 8 O -0.35 -14.62 10.15 -51.43 -0.52 -15.14 16 9 C 0.11 4.80 5.00 71.98 0.36 5.16 16 10 C -0.04 -1.91 1.06 -52.92 -0.06 -1.97 16 11 C -0.48 -26.86 9.33 25.60 0.24 -26.62 16 12 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 13 C 0.03 1.59 5.47 84.66 0.46 2.06 16 14 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 15 Si 0.92 43.64 24.98 68.60 1.71 45.35 16 16 H -0.28 -13.57 7.02 99.48 0.70 -12.87 16 17 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 18 H -0.22 -9.42 5.72 99.48 0.57 -8.85 16 19 C -0.16 -6.06 9.96 30.62 0.30 -5.76 16 20 C -0.17 -6.61 8.02 30.62 0.25 -6.36 16 21 C 0.66 13.93 8.77 129.79 1.14 15.07 16 22 O -0.62 -17.88 16.71 19.82 0.33 -17.55 16 23 O -0.52 -7.29 12.25 -55.46 -0.68 -7.97 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.08 0.79 7.38 -2.38 -0.02 0.77 16 26 H 0.10 0.61 7.89 -2.39 -0.02 0.59 16 27 H 0.09 1.54 7.42 -2.39 -0.02 1.53 16 28 H 0.13 1.17 7.89 -2.38 -0.02 1.15 16 29 H 0.07 1.63 8.04 -2.39 -0.02 1.61 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.04 1.95 5.07 -2.39 -0.01 1.94 16 34 H 0.07 2.70 7.95 -2.39 -0.02 2.68 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.09 3.33 8.14 -2.39 -0.02 3.32 16 37 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 38 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 40 H 0.44 2.52 9.11 -74.06 -0.67 1.85 16 Total: -1.00 -79.14 340.83 4.30 -74.84 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.23 Total: 14.96 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 5.39 Total: -1.64 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -2.51 Total: -70.67 kcal Atomic # 8 Polarization: -62.31 SS G_CDS: -0.53 Total: -62.84 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.71 Total: 45.35 kcal Total: -79.14 4.30 -74.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830768530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.971 kcal (2) G-P(sol) polarization free energy of solvation -79.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds