Wall clock time and date at job start Tue Mar 31 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86797 * 120.00222 * 2 1 4 4 H 1.48503 * 109.47485 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47401 * 300.00310 * 3 2 1 6 6 H 1.48505 * 109.47131 * 60.00237 * 3 2 1 7 7 C 1.38955 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00109 * 201.13498 * 7 2 1 9 9 N 1.37099 * 120.00201 * 21.14275 * 7 2 1 10 10 C 1.46498 * 119.99665 * 16.24952 * 9 7 2 11 11 C 1.50699 * 109.47189 * 264.14738 * 10 9 7 12 12 O 1.20816 * 120.00046 * 0.02562 * 11 10 9 13 13 O 1.34238 * 119.99718 * 180.02562 * 11 10 9 14 14 C 1.34771 * 120.00088 * 196.25958 * 9 7 2 15 15 O 1.21299 * 120.00070 * 359.97438 * 14 9 7 16 16 C 1.50699 * 119.99910 * 179.97438 * 14 9 7 17 17 C 1.53002 * 109.46983 * 179.97438 * 16 14 9 18 18 C 1.52996 * 109.47033 * 179.97438 * 17 16 14 19 19 C 1.53182 * 109.54324 * 65.44808 * 18 17 16 20 20 C 1.53097 * 109.16537 * 176.85021 * 19 18 17 21 21 O 1.42908 * 109.40929 * 302.38650 * 20 19 18 22 22 C 1.42905 * 114.09633 * 61.16071 * 21 20 19 23 23 C 1.53085 * 109.41716 * 298.83786 * 22 21 20 24 24 H 0.96995 * 119.99635 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47375 * 24.15255 * 10 9 7 26 26 H 1.08999 * 109.46809 * 144.14684 * 10 9 7 27 27 H 0.96697 * 116.99466 * 180.02562 * 13 11 10 28 28 H 1.09005 * 109.47304 * 59.99703 * 16 14 9 29 29 H 1.09000 * 109.47150 * 299.99257 * 16 14 9 30 30 H 1.08995 * 109.47058 * 60.00061 * 17 16 14 31 31 H 1.09000 * 109.47050 * 299.99905 * 17 16 14 32 32 H 1.09001 * 109.61799 * 305.22309 * 18 17 16 33 33 H 1.09003 * 109.52106 * 296.75187 * 19 18 17 34 34 H 1.08995 * 109.52603 * 56.94044 * 19 18 17 35 35 H 1.08997 * 109.48098 * 182.41179 * 20 19 18 36 36 H 1.08996 * 109.47846 * 62.36727 * 20 19 18 37 37 H 1.08999 * 109.47733 * 178.85283 * 22 21 20 38 38 H 1.09002 * 109.49236 * 58.82916 * 22 21 20 39 39 H 1.09000 * 109.52480 * 297.70663 * 23 22 21 40 40 H 1.08995 * 109.52815 * 177.51332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0344 -1.2347 0.3378 9 7 1.3926 -2.3509 -0.4272 10 6 0.1549 -2.2707 -1.2068 11 6 -1.0289 -2.4276 -0.2876 12 8 -0.8565 -2.5893 0.8972 13 8 -2.2750 -2.3876 -0.7852 14 6 1.9253 -3.5528 -0.1303 15 8 2.9502 -3.6192 0.5150 16 6 1.2475 -4.8142 -0.6000 17 6 2.0515 -6.0293 -0.1329 18 6 1.3631 -7.3099 -0.6092 19 6 1.4030 -7.3745 -2.1392 20 6 0.7827 -8.6952 -2.6028 21 8 1.4915 -9.7862 -2.0115 22 6 1.4486 -9.8043 -0.5832 23 6 2.0955 -8.5282 -0.0385 24 1 -0.4849 0.8400 0.0004 25 1 0.1018 -1.3031 -1.7058 26 1 0.1433 -3.0652 -1.9529 27 1 -3.0023 -2.4925 -0.1566 28 1 1.1913 -4.8127 -1.6886 29 1 0.2411 -4.8623 -0.1841 30 1 2.1081 -6.0309 0.9556 31 1 3.0578 -5.9809 -0.5490 32 1 0.3269 -7.3160 -0.2709 33 1 0.8365 -6.5407 -2.5538 34 1 2.4370 -7.3185 -2.4793 35 1 0.8472 -8.7657 -3.6886 36 1 -0.2629 -8.7327 -2.2972 37 1 1.9926 -10.6737 -0.2143 38 1 0.4117 -9.8565 -0.2511 39 1 3.1436 -8.4955 -0.3362 40 1 2.0244 -8.5194 1.0491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:19 Heat of formation + Delta-G solvation = -180.925911 kcal Electronic energy + Delta-G solvation = -23553.992141 eV Core-core repulsion = 19947.616160 eV Total energy + Delta-G solvation = -3606.375981 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.67829 -39.30213 -38.16014 -35.54381 -35.05571 -34.44284 -31.87058 -31.21166 -30.51603 -27.71709 -26.19045 -24.36811 -23.56609 -21.87594 -21.09369 -19.94644 -18.72784 -17.21167 -16.93483 -16.48672 -16.07324 -15.85693 -15.74695 -15.08591 -14.73219 -14.53302 -14.47440 -14.19745 -13.92877 -13.66251 -12.82262 -12.63986 -12.20754 -12.05112 -11.92496 -11.68364 -11.56161 -11.49331 -11.35150 -11.01265 -10.95147 -10.59161 -10.44575 -10.39740 -10.36219 -10.22791 -10.10545 -9.67190 -9.51107 -9.06824 -8.50206 -7.92666 -6.46571 -3.90266 3.11493 3.23377 3.30841 3.41570 3.63839 3.80676 4.06163 4.22794 4.58871 4.72915 4.83091 4.91333 4.97297 5.05374 5.15395 5.33759 5.41040 5.52735 5.56069 5.60106 5.69817 5.74115 5.84236 5.90921 6.00436 6.05858 6.08433 6.23117 6.27987 6.42721 6.57242 6.58218 6.69064 7.11297 7.45199 7.53357 7.98282 8.36005 8.99272 9.08534 9.30204 9.84431 10.62603 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024988 B = 0.004276 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.248944 B = 6545.839566 C = 7146.392938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.028 3.972 3 Si 0.928 3.072 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.303 4.303 8 H 0.108 0.892 9 N -0.436 5.436 10 C 0.147 3.853 11 C 0.489 3.511 12 O -0.504 6.504 13 O -0.535 6.535 14 C 0.461 3.539 15 O -0.577 6.577 16 C -0.134 4.134 17 C -0.090 4.090 18 C -0.091 4.091 19 C -0.153 4.153 20 C 0.060 3.940 21 O -0.387 6.387 22 C 0.061 3.939 23 C -0.151 4.151 24 H 0.270 0.730 25 H 0.129 0.871 26 H 0.076 0.924 27 H 0.391 0.609 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 -12.384 -6.206 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.175 4.175 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.156 5.156 10 C 0.020 3.980 11 C 0.329 3.671 12 O -0.389 6.389 13 O -0.346 6.346 14 C 0.250 3.750 15 O -0.460 6.460 16 C -0.175 4.175 17 C -0.128 4.128 18 C -0.109 4.109 19 C -0.191 4.191 20 C -0.016 4.016 21 O -0.306 6.306 22 C -0.016 4.016 23 C -0.189 4.189 24 H 0.080 0.920 25 H 0.146 0.854 26 H 0.094 0.906 27 H 0.248 0.752 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.771 -12.392 -5.926 14.013 hybrid contribution -0.665 1.283 0.761 1.633 sum -3.436 -11.109 -5.166 12.724 Atomic orbital electron populations 1.69797 1.06045 1.27728 1.48927 1.25222 0.95316 0.99964 0.96951 0.85833 0.79940 0.81016 0.77738 1.19167 1.20555 1.20910 1.19765 0.97676 0.83391 1.42226 0.87470 1.43488 1.19609 1.05587 1.46870 1.20671 0.81400 1.04696 0.91245 1.23890 0.83138 0.70804 0.89264 1.90613 1.85580 1.44974 1.17763 1.84531 1.17428 1.86400 1.46241 1.20131 0.87285 0.84294 0.83254 1.90521 1.26172 1.86596 1.42686 1.21639 1.00223 0.94329 1.01284 1.21274 0.98911 0.91046 1.01607 1.21258 0.99828 0.94981 0.94877 1.22318 1.02581 0.97915 0.96290 1.22601 0.94758 0.86193 0.98072 1.87902 1.75106 1.47908 1.19683 1.22576 0.99887 0.98042 0.81053 1.22239 1.00916 0.94709 1.00994 0.91985 0.85367 0.90566 0.75220 0.90446 0.90686 0.91326 0.91306 0.91253 0.90510 0.90860 0.89081 0.93356 0.89169 0.93394 0.90899 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.15 9.25 55.50 0.51 -22.64 16 2 C 0.03 0.72 4.89 -17.47 -0.09 0.63 16 3 Si 0.93 20.48 29.60 -169.99 -5.03 15.45 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.30 -8.34 9.35 -14.93 -0.14 -8.48 16 8 H 0.11 3.11 7.36 -52.49 -0.39 2.72 16 9 N -0.44 -10.90 2.18 -116.10 -0.25 -11.16 16 10 C 0.15 3.13 4.97 -5.20 -0.03 3.10 16 11 C 0.49 10.66 5.87 36.01 0.21 10.87 16 12 O -0.50 -13.01 16.81 -18.74 -0.32 -13.33 16 13 O -0.53 -9.39 13.42 -39.28 -0.53 -9.92 16 14 C 0.46 11.12 7.42 -10.99 -0.08 11.04 16 15 O -0.58 -15.88 15.62 5.54 0.09 -15.80 16 16 C -0.13 -2.41 4.08 -27.88 -0.11 -2.53 16 17 C -0.09 -1.45 3.98 -26.73 -0.11 -1.56 16 18 C -0.09 -1.13 2.27 -90.43 -0.21 -1.34 16 19 C -0.15 -1.73 5.10 -26.59 -0.14 -1.86 16 20 C 0.06 0.62 6.84 37.21 0.25 0.88 16 21 O -0.39 -4.65 10.77 -35.23 -0.38 -5.03 16 22 C 0.06 0.63 6.84 37.20 0.25 0.88 16 23 C -0.15 -1.70 5.42 -26.59 -0.14 -1.84 16 24 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 25 H 0.13 2.86 6.34 -51.93 -0.33 2.53 16 26 H 0.08 1.30 6.69 -51.93 -0.35 0.95 16 27 H 0.39 5.26 9.10 45.56 0.41 5.67 16 28 H 0.08 1.18 5.93 -51.93 -0.31 0.87 16 29 H 0.07 1.35 7.52 -51.93 -0.39 0.96 16 30 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.82 6.75 -51.93 -0.35 0.46 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -33.78 325.34 -6.38 -40.15 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.06 Total: 7.57 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -0.32 Total: 9.80 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.26 Total: -33.80 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -1.14 Total: -44.07 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.78 -6.38 -40.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.774 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds