Wall clock time and date at job start Tue Mar 31 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86797 * 120.00222 * 2 1 4 4 H 1.48503 * 109.47485 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47401 * 300.00310 * 3 2 1 6 6 H 1.48505 * 109.47131 * 60.00237 * 3 2 1 7 7 C 1.38955 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00109 * 201.13498 * 7 2 1 9 9 N 1.37099 * 120.00201 * 21.14275 * 7 2 1 10 10 C 1.46498 * 119.99665 * 16.24952 * 9 7 2 11 11 C 1.50699 * 109.47189 * 264.14738 * 10 9 7 12 12 O 1.20816 * 120.00046 * 0.02562 * 11 10 9 13 13 O 1.34238 * 119.99718 * 180.02562 * 11 10 9 14 14 C 1.34771 * 120.00088 * 196.25958 * 9 7 2 15 15 O 1.21299 * 120.00070 * 359.97438 * 14 9 7 16 16 C 1.50699 * 119.99910 * 179.97438 * 14 9 7 17 17 C 1.53002 * 109.46983 * 179.97438 * 16 14 9 18 18 C 1.52996 * 109.47033 * 179.97438 * 17 16 14 19 19 C 1.53182 * 109.54324 * 65.44808 * 18 17 16 20 20 C 1.53097 * 109.16537 * 176.85021 * 19 18 17 21 21 O 1.42908 * 109.40929 * 302.38650 * 20 19 18 22 22 C 1.42905 * 114.09633 * 61.16071 * 21 20 19 23 23 C 1.53085 * 109.41716 * 298.83786 * 22 21 20 24 24 H 0.96995 * 119.99635 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47375 * 24.15255 * 10 9 7 26 26 H 1.08999 * 109.46809 * 144.14684 * 10 9 7 27 27 H 0.96697 * 116.99466 * 180.02562 * 13 11 10 28 28 H 1.09005 * 109.47304 * 59.99703 * 16 14 9 29 29 H 1.09000 * 109.47150 * 299.99257 * 16 14 9 30 30 H 1.08995 * 109.47058 * 60.00061 * 17 16 14 31 31 H 1.09000 * 109.47050 * 299.99905 * 17 16 14 32 32 H 1.09001 * 109.61799 * 305.22309 * 18 17 16 33 33 H 1.09003 * 109.52106 * 296.75187 * 19 18 17 34 34 H 1.08995 * 109.52603 * 56.94044 * 19 18 17 35 35 H 1.08997 * 109.48098 * 182.41179 * 20 19 18 36 36 H 1.08996 * 109.47846 * 62.36727 * 20 19 18 37 37 H 1.08999 * 109.47733 * 178.85283 * 22 21 20 38 38 H 1.09002 * 109.49236 * 58.82916 * 22 21 20 39 39 H 1.09000 * 109.52480 * 297.70663 * 23 22 21 40 40 H 1.08995 * 109.52815 * 177.51332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0344 -1.2347 0.3378 9 7 1.3926 -2.3509 -0.4272 10 6 0.1549 -2.2707 -1.2068 11 6 -1.0289 -2.4276 -0.2876 12 8 -0.8565 -2.5893 0.8972 13 8 -2.2750 -2.3876 -0.7852 14 6 1.9253 -3.5528 -0.1303 15 8 2.9502 -3.6192 0.5150 16 6 1.2475 -4.8142 -0.6000 17 6 2.0515 -6.0293 -0.1329 18 6 1.3631 -7.3099 -0.6092 19 6 1.4030 -7.3745 -2.1392 20 6 0.7827 -8.6952 -2.6028 21 8 1.4915 -9.7862 -2.0115 22 6 1.4486 -9.8043 -0.5832 23 6 2.0955 -8.5282 -0.0385 24 1 -0.4849 0.8400 0.0004 25 1 0.1018 -1.3031 -1.7058 26 1 0.1433 -3.0652 -1.9529 27 1 -3.0023 -2.4925 -0.1566 28 1 1.1913 -4.8127 -1.6886 29 1 0.2411 -4.8623 -0.1841 30 1 2.1081 -6.0309 0.9556 31 1 3.0578 -5.9809 -0.5490 32 1 0.3269 -7.3160 -0.2709 33 1 0.8365 -6.5407 -2.5538 34 1 2.4370 -7.3185 -2.4793 35 1 0.8472 -8.7657 -3.6886 36 1 -0.2629 -8.7327 -2.2972 37 1 1.9926 -10.6737 -0.2143 38 1 0.4117 -9.8565 -0.2511 39 1 3.1436 -8.4955 -0.3362 40 1 2.0244 -8.5194 1.0491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:19 Heat of formation + Delta-G solvation = -204.352301 kcal Electronic energy + Delta-G solvation = -23555.007986 eV Core-core repulsion = 19947.616160 eV Total energy + Delta-G solvation = -3607.391825 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28839 -40.41686 -39.84050 -37.12724 -36.48266 -36.12788 -33.80148 -32.17055 -31.71921 -29.49329 -27.66418 -25.95420 -24.42323 -23.16103 -22.69385 -20.92197 -20.47140 -19.02519 -18.69396 -18.07768 -17.44884 -16.99872 -16.90217 -16.44871 -16.24722 -16.17082 -15.90615 -15.56442 -15.24771 -14.84587 -14.41347 -14.01049 -13.62264 -13.59915 -13.35882 -13.14825 -13.03510 -12.89806 -12.65293 -12.36762 -12.26427 -12.16853 -12.12852 -12.04659 -11.72219 -11.53325 -11.21399 -11.11214 -10.96734 -10.46094 -10.36368 -9.87228 -8.44964 -5.96130 1.34191 1.41879 1.55905 1.69921 1.88480 2.25765 2.54295 2.94174 3.04511 3.11290 3.70004 3.75743 3.85869 4.09400 4.12674 4.18875 4.30770 4.34835 4.46159 4.50789 4.65782 4.68209 4.76455 4.82139 4.85438 4.93015 4.96038 4.98268 5.10833 5.20376 5.24576 5.35028 5.44705 5.51343 5.95624 6.01699 6.32861 6.39155 7.10883 7.30770 7.46241 7.94116 8.61974 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024988 B = 0.004276 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.248944 B = 6545.839566 C = 7146.392938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.000 4.000 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.259 1.259 6 H -0.285 1.285 7 C -0.342 4.342 8 H 0.076 0.924 9 N -0.448 5.448 10 C 0.142 3.858 11 C 0.497 3.503 12 O -0.551 6.551 13 O -0.517 6.517 14 C 0.445 3.555 15 O -0.626 6.626 16 C -0.120 4.120 17 C -0.083 4.083 18 C -0.084 4.084 19 C -0.152 4.152 20 C 0.059 3.941 21 O -0.405 6.405 22 C 0.062 3.938 23 C -0.151 4.151 24 H 0.274 0.726 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.413 0.587 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.337 -12.896 -7.823 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.201 4.201 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.183 1.183 6 H -0.211 1.211 7 C -0.469 4.469 8 H 0.094 0.906 9 N -0.167 5.167 10 C 0.017 3.983 11 C 0.340 3.660 12 O -0.440 6.440 13 O -0.329 6.329 14 C 0.236 3.764 15 O -0.513 6.513 16 C -0.160 4.160 17 C -0.121 4.121 18 C -0.103 4.103 19 C -0.190 4.190 20 C -0.017 4.017 21 O -0.324 6.324 22 C -0.015 4.015 23 C -0.189 4.189 24 H 0.084 0.916 25 H 0.137 0.863 26 H 0.142 0.858 27 H 0.273 0.727 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.530 -12.908 -7.583 15.641 hybrid contribution -0.208 1.466 1.281 1.958 sum -4.738 -11.442 -6.302 13.895 Atomic orbital electron populations 1.69871 1.06736 1.28628 1.48091 1.25930 0.96157 1.02260 0.95802 0.84927 0.78262 0.77138 0.78221 1.19901 1.18333 1.21089 1.19645 0.97157 0.85460 1.44677 0.90623 1.43665 1.20748 1.05274 1.47007 1.20860 0.79988 1.06022 0.91467 1.23848 0.84276 0.69525 0.88383 1.90608 1.86458 1.47318 1.19654 1.84453 1.16702 1.85452 1.46341 1.21226 0.86829 0.85840 0.82486 1.90477 1.28402 1.87504 1.44870 1.21605 0.99663 0.91500 1.03218 1.21201 0.98526 0.92412 1.00005 1.21191 0.99797 0.93230 0.96039 1.22317 1.02451 0.99211 0.95010 1.22718 0.95065 0.84958 0.98951 1.87886 1.75555 1.48529 1.20469 1.22660 1.00686 0.97715 0.80391 1.22232 1.00370 0.94999 1.01254 0.91556 0.86290 0.85820 0.72724 0.87007 0.90116 0.93805 0.92688 0.90378 0.89421 0.91773 0.87553 0.92102 0.87768 0.92182 0.91889 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.23 9.25 21.66 0.20 -46.03 16 2 C 0.00 -0.01 4.89 84.93 0.42 0.40 16 3 Si 0.99 42.08 29.60 68.60 2.03 44.11 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.34 -19.34 9.35 84.04 0.79 -18.56 16 8 H 0.08 4.65 7.36 -2.91 -0.02 4.63 16 9 N -0.45 -22.67 2.18 -639.60 -1.39 -24.07 16 10 C 0.14 5.87 4.97 85.63 0.43 6.30 16 11 C 0.50 20.91 5.87 71.24 0.42 21.33 16 12 O -0.55 -28.28 16.81 21.99 0.37 -27.91 16 13 O -0.52 -16.64 13.42 -51.49 -0.69 -17.33 16 14 C 0.45 21.90 7.42 87.66 0.65 22.55 16 15 O -0.63 -36.17 15.62 -3.09 -0.05 -36.22 16 16 C -0.12 -4.19 4.08 29.85 0.12 -4.07 16 17 C -0.08 -2.68 3.98 30.59 0.12 -2.56 16 18 C -0.08 -1.97 2.27 -10.67 -0.02 -1.99 16 19 C -0.15 -3.07 5.10 30.69 0.16 -2.91 16 20 C 0.06 1.05 6.84 72.01 0.49 1.54 16 21 O -0.41 -8.79 10.77 -148.98 -1.60 -10.39 16 22 C 0.06 1.13 6.84 72.01 0.49 1.63 16 23 C -0.15 -3.22 5.42 30.68 0.17 -3.06 16 24 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 25 H 0.12 5.16 6.34 -2.39 -0.02 5.15 16 26 H 0.12 3.82 6.69 -2.39 -0.02 3.81 16 27 H 0.41 9.84 9.10 -74.06 -0.67 9.17 16 28 H 0.11 3.10 5.93 -2.38 -0.01 3.08 16 29 H 0.08 2.77 7.52 -2.39 -0.02 2.75 16 30 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 31 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 1.56 6.75 -2.39 -0.02 1.54 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -75.44 325.34 3.47 -71.97 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.38 Total: 25.25 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 4.22 Total: 20.61 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -1.19 Total: -70.09 kcal Atomic # 8 Polarization: -89.87 SS G_CDS: -1.97 Total: -91.85 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -75.44 3.47 -71.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.378 kcal (2) G-P(sol) polarization free energy of solvation -75.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds