Wall clock time and date at job start Tue Mar 31 2020 05:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86808 * 119.99707 * 2 1 4 4 H 1.48504 * 109.47016 * 264.98347 * 3 2 1 5 5 H 1.48500 * 109.47198 * 24.98496 * 3 2 1 6 6 H 1.48493 * 109.47115 * 144.98736 * 3 2 1 7 7 C 1.38950 * 120.00569 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00376 * 200.80233 * 7 2 1 9 9 N 1.37103 * 119.99447 * 20.80539 * 7 2 1 10 10 C 1.46495 * 120.00138 * 12.35051 * 9 7 2 11 11 C 1.50697 * 109.47184 * 264.45493 * 10 9 7 12 12 O 1.20830 * 119.99933 * 0.02562 * 11 10 9 13 13 O 1.34222 * 120.00058 * 179.97438 * 11 10 9 14 14 C 1.34778 * 119.99610 * 192.35010 * 9 7 2 15 15 O 1.21291 * 119.99901 * 179.97438 * 14 9 7 16 16 C 1.50705 * 120.00009 * 0.02562 * 14 9 7 17 17 C 1.53002 * 109.47079 * 180.02562 * 16 14 9 18 18 O 1.42906 * 109.47032 * 299.99938 * 17 16 14 19 19 C 1.52999 * 109.47227 * 179.97438 * 17 16 14 20 20 C 1.52995 * 109.47093 * 179.97438 * 19 17 16 21 21 C 1.53003 * 109.47240 * 59.99543 * 20 19 17 22 22 C 1.52999 * 109.47451 * 300.00237 * 21 20 19 23 23 C 1.53002 * 109.47101 * 59.99530 * 17 16 14 24 24 H 0.96996 * 120.00489 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47001 * 24.46028 * 10 9 7 26 26 H 1.09006 * 109.46671 * 144.46082 * 10 9 7 27 27 H 0.96704 * 117.00503 * 180.02562 * 13 11 10 28 28 H 1.08999 * 109.47368 * 60.00040 * 16 14 9 29 29 H 1.09001 * 109.47015 * 299.99481 * 16 14 9 30 30 H 0.96701 * 113.99969 * 59.99852 * 18 17 16 31 31 H 1.09005 * 109.46775 * 59.99895 * 19 17 16 32 32 H 1.08997 * 109.46803 * 299.99943 * 19 17 16 33 33 H 1.09010 * 109.47214 * 299.99889 * 20 19 17 34 34 H 1.09000 * 109.47222 * 180.02562 * 20 19 17 35 35 H 1.09008 * 109.46307 * 60.00365 * 21 20 19 36 36 H 1.09002 * 109.47234 * 179.97438 * 21 20 19 37 37 H 1.09005 * 109.46775 * 179.97438 * 22 21 20 38 38 H 1.08997 * 109.46803 * 299.99482 * 22 21 20 39 39 H 1.09002 * 109.47307 * 299.99851 * 23 17 16 40 40 H 1.09001 * 109.47287 * 60.00414 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.6016 1.9853 -1.3948 5 1 1.3965 2.6810 0.5914 6 1 3.4886 1.4733 0.8033 7 6 2.0090 -1.2033 0.0005 8 1 3.0361 -1.2336 0.3327 9 7 1.3905 -2.3521 -0.4207 10 6 0.1053 -2.2780 -1.1198 11 6 -1.0157 -2.4781 -0.1328 12 8 -0.7666 -2.6631 1.0350 13 8 -2.2909 -2.4498 -0.5506 14 6 1.9651 -3.5496 -0.1916 15 8 1.4177 -4.5659 -0.5638 16 6 3.2870 -3.6257 0.5281 17 6 3.7142 -5.0893 0.6565 18 8 2.7268 -5.8105 1.3962 19 6 5.0565 -5.1666 1.3866 20 6 5.4833 -6.6301 1.5155 21 6 5.6247 -7.2449 0.1216 22 6 4.2823 -7.1676 -0.6085 23 6 3.8563 -5.7033 -0.7377 24 1 -0.4851 0.8400 0.0004 25 1 0.0040 -1.3006 -1.5915 26 1 0.0611 -3.0558 -1.8823 27 1 -2.9756 -2.5828 0.1192 28 1 3.1858 -3.1879 1.5211 29 1 4.0402 -3.0760 -0.0364 30 1 1.8490 -5.8040 0.9906 31 1 4.9556 -4.7290 2.3798 32 1 5.8093 -4.6165 0.8220 33 1 4.7303 -7.1798 2.0804 34 1 6.4394 -6.6853 2.0360 35 1 6.3777 -6.6952 -0.4432 36 1 5.9292 -8.2875 0.2134 37 1 4.3833 -7.6052 -1.6017 38 1 3.5294 -7.7173 -0.0437 39 1 2.9001 -5.6482 -1.2582 40 1 4.6094 -5.1532 -1.3020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:19 Heat of formation + Delta-G solvation = -187.211585 kcal Electronic energy + Delta-G solvation = -24362.153916 eV Core-core repulsion = 20755.505368 eV Total energy + Delta-G solvation = -3606.648548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.87021 -38.98120 -37.66640 -35.32243 -34.67269 -34.28829 -31.73518 -31.11100 -30.39248 -28.37011 -26.26790 -24.69377 -22.39784 -21.59621 -20.56013 -19.33621 -19.26580 -17.12117 -16.89110 -16.36514 -15.70835 -15.59374 -15.12357 -14.59268 -14.44364 -14.43660 -14.14339 -13.87309 -13.62607 -13.09842 -12.57271 -12.40575 -12.06706 -11.96910 -11.78071 -11.57211 -11.47584 -11.17479 -10.99292 -10.94418 -10.71369 -10.62318 -10.52214 -10.36563 -10.31275 -10.18921 -9.79207 -9.61617 -9.11565 -9.07213 -8.51822 -8.09063 -6.60877 -4.07936 3.01553 3.12805 3.15284 3.50965 3.64403 3.94076 4.22174 4.58054 4.79457 4.94114 5.07189 5.13077 5.26884 5.49963 5.55513 5.66891 5.79982 5.84854 5.95047 6.02264 6.08215 6.15772 6.26651 6.29204 6.34479 6.46039 6.48986 6.52443 6.56547 6.63628 6.72007 6.80616 6.96171 7.25864 7.46021 7.57992 8.12664 8.45587 8.88075 9.11308 9.25595 9.65739 10.45700 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.005831 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.246263 B = 4801.025296 C = 5766.674148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.036 3.964 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.334 4.334 8 H 0.107 0.893 9 N -0.424 5.424 10 C 0.151 3.849 11 C 0.499 3.501 12 O -0.513 6.513 13 O -0.534 6.534 14 C 0.471 3.529 15 O -0.606 6.606 16 C -0.148 4.148 17 C 0.157 3.843 18 O -0.567 6.567 19 C -0.105 4.105 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.155 4.155 24 H 0.274 0.726 25 H 0.131 0.869 26 H 0.081 0.919 27 H 0.391 0.609 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.387 0.613 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.827 -5.387 -2.062 8.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.169 4.169 3 Si 0.755 3.245 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.461 4.461 8 H 0.124 0.876 9 N -0.142 5.142 10 C 0.026 3.974 11 C 0.340 3.660 12 O -0.399 6.399 13 O -0.345 6.345 14 C 0.262 3.738 15 O -0.495 6.495 16 C -0.188 4.188 17 C 0.116 3.884 18 O -0.378 6.378 19 C -0.143 4.143 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.149 4.149 23 C -0.192 4.192 24 H 0.085 0.915 25 H 0.149 0.851 26 H 0.099 0.901 27 H 0.247 0.753 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.240 0.760 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.280 -5.781 -1.819 8.728 hybrid contribution -0.641 1.290 0.274 1.467 sum 5.639 -4.491 -1.545 7.372 Atomic orbital electron populations 1.69855 1.06212 1.28312 1.46598 1.25237 0.95328 1.00114 0.96184 0.85911 0.79311 0.80630 0.78670 1.20023 1.20907 1.19369 1.19718 0.97395 0.84214 1.44796 0.87550 1.43471 1.16216 1.05730 1.48737 1.20604 0.80618 1.04552 0.91669 1.23756 0.82235 0.70280 0.89741 1.90575 1.84036 1.45484 1.19756 1.84525 1.17987 1.85951 1.46027 1.20118 0.88368 0.82845 0.82507 1.90355 1.67239 1.34328 1.57594 1.22139 0.96359 0.98011 1.02266 1.20726 0.88215 0.88790 0.90669 1.86269 1.23149 1.75462 1.52922 1.21519 0.94994 0.97050 1.00702 1.21422 1.00513 0.96171 0.96935 1.21547 0.97723 0.99828 0.96447 1.21426 0.96851 0.97327 0.99305 1.22454 1.03759 0.95360 0.97647 0.91512 0.85111 0.90083 0.75335 0.89068 0.89570 0.76025 0.91606 0.91221 0.91203 0.92821 0.92608 0.92779 0.92961 0.91614 0.88301 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.89 9.26 55.50 0.51 -21.38 16 2 C 0.04 0.86 4.96 -17.47 -0.09 0.78 16 3 Si 0.93 18.73 29.60 -169.99 -5.03 13.70 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.33 -8.11 9.23 -14.93 -0.14 -8.25 16 8 H 0.11 2.42 6.48 -52.49 -0.34 2.08 16 9 N -0.42 -10.21 2.17 -116.10 -0.25 -10.47 16 10 C 0.15 3.51 5.15 -5.20 -0.03 3.48 16 11 C 0.50 11.90 6.62 36.00 0.24 12.14 16 12 O -0.51 -13.96 17.01 -18.75 -0.32 -14.28 16 13 O -0.53 -10.53 13.42 -39.24 -0.53 -11.06 16 14 C 0.47 10.71 6.94 -10.98 -0.08 10.63 16 15 O -0.61 -14.19 11.37 -12.73 -0.14 -14.34 16 16 C -0.15 -2.87 3.39 -27.88 -0.09 -2.96 16 17 C 0.16 2.75 0.68 -90.62 -0.06 2.69 16 18 O -0.57 -11.11 11.60 -53.51 -0.62 -11.73 16 19 C -0.11 -1.55 4.94 -26.73 -0.13 -1.68 16 20 C -0.11 -1.51 5.78 -26.73 -0.15 -1.66 16 21 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 22 C -0.11 -1.60 5.78 -26.71 -0.15 -1.76 16 23 C -0.15 -2.55 4.60 -26.70 -0.12 -2.68 16 24 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 25 H 0.13 3.06 6.04 -51.93 -0.31 2.75 16 26 H 0.08 1.75 7.60 -51.93 -0.39 1.36 16 27 H 0.39 5.97 9.10 45.56 0.41 6.39 16 28 H 0.09 1.86 8.07 -51.93 -0.42 1.44 16 29 H 0.09 1.53 7.74 -51.93 -0.40 1.13 16 30 H 0.39 8.09 6.53 45.56 0.30 8.39 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.03 7.68 -51.92 -0.40 0.63 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16 39 H 0.10 1.88 5.51 -51.93 -0.29 1.60 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 317.49 15.07 4.78 4.78 Total: -1.00 -29.19 317.49 -6.90 -36.09 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -4.33 Total: 19.60 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -0.97 Total: 9.08 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.26 Total: -31.84 kcal Atomic # 8 Polarization: -49.79 SS G_CDS: -1.61 Total: -51.40 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.19 -6.90 -36.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.124 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds