Wall clock time and date at job start Tue Mar 31 2020 05:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86808 * 119.99707 * 2 1 4 4 H 1.48504 * 109.47016 * 264.98347 * 3 2 1 5 5 H 1.48500 * 109.47198 * 24.98496 * 3 2 1 6 6 H 1.48493 * 109.47115 * 144.98736 * 3 2 1 7 7 C 1.38950 * 120.00569 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00376 * 200.80233 * 7 2 1 9 9 N 1.37103 * 119.99447 * 20.80539 * 7 2 1 10 10 C 1.46495 * 120.00138 * 12.35051 * 9 7 2 11 11 C 1.50697 * 109.47184 * 264.45493 * 10 9 7 12 12 O 1.20830 * 119.99933 * 0.02562 * 11 10 9 13 13 O 1.34222 * 120.00058 * 179.97438 * 11 10 9 14 14 C 1.34778 * 119.99610 * 192.35010 * 9 7 2 15 15 O 1.21291 * 119.99901 * 179.97438 * 14 9 7 16 16 C 1.50705 * 120.00009 * 0.02562 * 14 9 7 17 17 C 1.53002 * 109.47079 * 180.02562 * 16 14 9 18 18 O 1.42906 * 109.47032 * 299.99938 * 17 16 14 19 19 C 1.52999 * 109.47227 * 179.97438 * 17 16 14 20 20 C 1.52995 * 109.47093 * 179.97438 * 19 17 16 21 21 C 1.53003 * 109.47240 * 59.99543 * 20 19 17 22 22 C 1.52999 * 109.47451 * 300.00237 * 21 20 19 23 23 C 1.53002 * 109.47101 * 59.99530 * 17 16 14 24 24 H 0.96996 * 120.00489 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47001 * 24.46028 * 10 9 7 26 26 H 1.09006 * 109.46671 * 144.46082 * 10 9 7 27 27 H 0.96704 * 117.00503 * 180.02562 * 13 11 10 28 28 H 1.08999 * 109.47368 * 60.00040 * 16 14 9 29 29 H 1.09001 * 109.47015 * 299.99481 * 16 14 9 30 30 H 0.96701 * 113.99969 * 59.99852 * 18 17 16 31 31 H 1.09005 * 109.46775 * 59.99895 * 19 17 16 32 32 H 1.08997 * 109.46803 * 299.99943 * 19 17 16 33 33 H 1.09010 * 109.47214 * 299.99889 * 20 19 17 34 34 H 1.09000 * 109.47222 * 180.02562 * 20 19 17 35 35 H 1.09008 * 109.46307 * 60.00365 * 21 20 19 36 36 H 1.09002 * 109.47234 * 179.97438 * 21 20 19 37 37 H 1.09005 * 109.46775 * 179.97438 * 22 21 20 38 38 H 1.08997 * 109.46803 * 299.99482 * 22 21 20 39 39 H 1.09002 * 109.47307 * 299.99851 * 23 17 16 40 40 H 1.09001 * 109.47287 * 60.00414 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.6016 1.9853 -1.3948 5 1 1.3965 2.6810 0.5914 6 1 3.4886 1.4733 0.8033 7 6 2.0090 -1.2033 0.0005 8 1 3.0361 -1.2336 0.3327 9 7 1.3905 -2.3521 -0.4207 10 6 0.1053 -2.2780 -1.1198 11 6 -1.0157 -2.4781 -0.1328 12 8 -0.7666 -2.6631 1.0350 13 8 -2.2909 -2.4498 -0.5506 14 6 1.9651 -3.5496 -0.1916 15 8 1.4177 -4.5659 -0.5638 16 6 3.2870 -3.6257 0.5281 17 6 3.7142 -5.0893 0.6565 18 8 2.7268 -5.8105 1.3962 19 6 5.0565 -5.1666 1.3866 20 6 5.4833 -6.6301 1.5155 21 6 5.6247 -7.2449 0.1216 22 6 4.2823 -7.1676 -0.6085 23 6 3.8563 -5.7033 -0.7377 24 1 -0.4851 0.8400 0.0004 25 1 0.0040 -1.3006 -1.5915 26 1 0.0611 -3.0558 -1.8823 27 1 -2.9756 -2.5828 0.1192 28 1 3.1858 -3.1879 1.5211 29 1 4.0402 -3.0760 -0.0364 30 1 1.8490 -5.8040 0.9906 31 1 4.9556 -4.7290 2.3798 32 1 5.8093 -4.6165 0.8220 33 1 4.7303 -7.1798 2.0804 34 1 6.4394 -6.6853 2.0360 35 1 6.3777 -6.6952 -0.4432 36 1 5.9292 -8.2875 0.2134 37 1 4.3833 -7.6052 -1.6017 38 1 3.5294 -7.7173 -0.0437 39 1 2.9001 -5.6482 -1.2582 40 1 4.6094 -5.1532 -1.3020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:18 Heat of formation + Delta-G solvation = -205.855872 kcal Electronic energy + Delta-G solvation = -24362.962393 eV Core-core repulsion = 20755.505368 eV Total energy + Delta-G solvation = -3607.457025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.52504 -40.66695 -39.25924 -37.04371 -36.49435 -35.72108 -33.55024 -32.60845 -31.57730 -30.04082 -27.80076 -26.47145 -23.59564 -23.11622 -22.07564 -21.07781 -20.55134 -18.95572 -18.65440 -18.09852 -17.41103 -17.12587 -16.59039 -16.25717 -16.20673 -15.89956 -15.83833 -15.24336 -14.99381 -14.47111 -14.06367 -13.87319 -13.73537 -13.39707 -13.33310 -13.16930 -12.82484 -12.64581 -12.56389 -12.47109 -12.29951 -12.19197 -12.09532 -11.90255 -11.57925 -11.57502 -11.30834 -11.07433 -10.95697 -10.47178 -10.20131 -9.91317 -8.41920 -5.94709 1.40753 1.49167 1.59464 1.71034 1.83610 2.25898 2.51276 2.87296 3.15526 3.43102 3.85798 3.91416 3.98783 4.22820 4.28096 4.40925 4.43586 4.55903 4.67776 4.70230 4.71767 4.79210 4.84958 4.90444 4.92633 5.02523 5.17027 5.22162 5.35252 5.36836 5.41731 5.43735 5.57649 5.65196 5.74706 5.88510 6.29791 6.84555 7.06014 7.33748 7.45910 7.85884 8.64689 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.005831 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.246263 B = 4801.025296 C = 5766.674148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.006 4.006 3 Si 0.996 3.004 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.261 1.261 7 C -0.353 4.353 8 H 0.117 0.883 9 N -0.439 5.439 10 C 0.149 3.851 11 C 0.502 3.498 12 O -0.554 6.554 13 O -0.521 6.521 14 C 0.461 3.539 15 O -0.618 6.618 16 C -0.142 4.142 17 C 0.152 3.848 18 O -0.577 6.577 19 C -0.105 4.105 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.110 4.110 23 C -0.150 4.150 24 H 0.273 0.727 25 H 0.128 0.872 26 H 0.091 0.909 27 H 0.412 0.588 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.377 0.623 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.892 -5.267 -2.450 9.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.207 4.207 3 Si 0.820 3.180 4 H -0.191 1.191 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.479 4.479 8 H 0.134 0.866 9 N -0.156 5.156 10 C 0.023 3.977 11 C 0.345 3.655 12 O -0.443 6.443 13 O -0.333 6.333 14 C 0.253 3.747 15 O -0.507 6.507 16 C -0.181 4.181 17 C 0.111 3.889 18 O -0.387 6.387 19 C -0.142 4.142 20 C -0.148 4.148 21 C -0.151 4.151 22 C -0.147 4.147 23 C -0.188 4.188 24 H 0.083 0.917 25 H 0.145 0.855 26 H 0.109 0.891 27 H 0.271 0.729 28 H 0.096 0.904 29 H 0.123 0.877 30 H 0.228 0.772 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.337 -5.679 -2.218 10.328 hybrid contribution -1.391 1.204 0.377 1.878 sum 6.946 -4.475 -1.842 8.465 Atomic orbital electron populations 1.69953 1.07501 1.28817 1.47537 1.26095 0.96032 1.02997 0.95604 0.84886 0.78011 0.76214 0.78920 1.19106 1.21655 1.18527 1.20094 0.98019 0.84585 1.45228 0.86563 1.43697 1.16548 1.06217 1.49159 1.20643 0.80698 1.04565 0.91806 1.23886 0.83354 0.69153 0.89139 1.90550 1.84885 1.47574 1.21303 1.84458 1.17224 1.85135 1.46525 1.20763 0.89367 0.82394 0.82172 1.90350 1.67839 1.34637 1.57909 1.22163 0.95081 0.99796 1.01109 1.20999 0.88886 0.87267 0.91735 1.86276 1.22973 1.75892 1.53516 1.21578 0.93629 0.98594 1.00402 1.21420 1.01108 0.94731 0.97588 1.21537 0.96682 1.01207 0.95667 1.21408 0.97624 0.95484 1.00211 1.22347 1.02659 0.97100 0.96664 0.91670 0.85487 0.89131 0.72892 0.90411 0.87664 0.77185 0.92067 0.88956 0.93173 0.90276 0.90988 0.91005 0.91572 0.93416 0.91317 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.39 9.26 21.66 0.20 -45.19 16 2 C -0.01 -0.28 4.96 84.93 0.42 0.14 16 3 Si 1.00 37.82 29.60 68.60 2.03 39.85 16 4 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 5 H -0.29 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.35 -17.07 9.23 84.04 0.78 -16.29 16 8 H 0.12 5.22 6.48 -2.91 -0.02 5.20 16 9 N -0.44 -21.32 2.17 -639.60 -1.39 -22.71 16 10 C 0.15 6.98 5.15 85.63 0.44 7.42 16 11 C 0.50 24.21 6.62 71.23 0.47 24.69 16 12 O -0.55 -30.75 17.01 21.95 0.37 -30.38 16 13 O -0.52 -20.34 13.42 -51.34 -0.69 -21.03 16 14 C 0.46 21.24 6.94 87.66 0.61 21.85 16 15 O -0.62 -29.59 11.37 14.41 0.16 -29.42 16 16 C -0.14 -5.45 3.39 29.85 0.10 -5.35 16 17 C 0.15 5.20 0.68 -10.79 -0.01 5.20 16 18 O -0.58 -22.97 11.60 -131.51 -1.53 -24.50 16 19 C -0.10 -2.87 4.94 30.59 0.15 -2.71 16 20 C -0.11 -2.68 5.78 30.59 0.18 -2.50 16 21 C -0.11 -2.50 5.92 30.59 0.18 -2.32 16 22 C -0.11 -2.98 5.78 30.61 0.18 -2.80 16 23 C -0.15 -4.80 4.60 30.61 0.14 -4.66 16 24 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 25 H 0.13 6.03 6.04 -2.39 -0.01 6.02 16 26 H 0.09 3.97 7.60 -2.38 -0.02 3.96 16 27 H 0.41 12.25 9.10 -74.05 -0.67 11.58 16 28 H 0.08 3.19 8.07 -2.39 -0.02 3.17 16 29 H 0.11 3.59 7.74 -2.39 -0.02 3.57 16 30 H 0.38 16.38 6.53 -74.06 -0.48 15.90 16 31 H 0.06 1.72 8.14 -2.38 -0.02 1.71 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.05 1.41 7.68 -2.38 -0.02 1.39 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.05 1.45 7.68 -2.39 -0.02 1.44 16 39 H 0.07 2.63 5.51 -2.39 -0.01 2.62 16 40 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -62.89 317.49 2.72 -60.17 By element: Atomic # 1 Polarization: 50.64 SS G_CDS: -0.08 Total: 50.56 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 3.64 Total: 22.66 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -1.19 Total: -67.91 kcal Atomic # 8 Polarization: -103.65 SS G_CDS: -1.68 Total: -105.32 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Total: -62.89 2.72 -60.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.688 kcal (2) G-P(sol) polarization free energy of solvation -62.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds