Wall clock time and date at job start Tue Mar 31 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47209 * 2 1 4 4 C 1.50704 * 109.47084 * 119.99913 * 2 1 3 5 5 O 1.21290 * 120.00190 * 107.54912 * 4 2 1 6 6 N 1.34774 * 119.99770 * 287.55191 * 4 2 1 7 7 C 1.37095 * 120.00322 * 357.50294 * 6 4 2 8 8 H 1.08007 * 119.99956 * 19.73895 * 7 6 4 9 9 C 1.38951 * 120.00415 * 199.46207 * 7 6 4 10 10 N 1.31408 * 119.99821 * 21.60195 * 9 7 6 11 11 Si 1.86801 * 120.00189 * 201.60026 * 9 7 6 12 12 H 1.48498 * 109.47072 * 89.99881 * 11 9 7 13 13 H 1.48501 * 109.47113 * 209.99907 * 11 9 7 14 14 H 1.48504 * 109.47216 * 330.00368 * 11 9 7 15 15 C 1.46506 * 119.99857 * 177.50999 * 6 4 2 16 16 C 1.50699 * 109.47361 * 88.71736 * 15 6 4 17 17 O 1.20831 * 119.99859 * 0.02562 * 16 15 6 18 18 O 1.34222 * 119.99996 * 179.97438 * 16 15 6 19 19 C 1.52999 * 109.47615 * 239.99852 * 2 1 3 20 20 C 1.53177 * 109.54497 * 179.55664 * 19 2 1 21 21 C 1.53094 * 109.15921 * 183.15369 * 20 19 2 22 22 O 1.42900 * 109.41923 * 57.61086 * 21 20 19 23 23 C 1.42901 * 114.09248 * 298.83818 * 22 21 20 24 24 C 1.53091 * 109.41462 * 61.16124 * 23 22 21 25 25 H 1.09004 * 109.46925 * 173.00526 * 1 2 3 26 26 H 1.08995 * 109.47664 * 293.00409 * 1 2 3 27 27 H 1.09005 * 109.47011 * 53.01099 * 1 2 3 28 28 H 0.97006 * 119.99672 * 180.02562 * 10 9 7 29 29 H 1.08998 * 109.46564 * 208.71753 * 15 6 4 30 30 H 1.08997 * 109.46784 * 328.71493 * 15 6 4 31 31 H 0.96702 * 116.99678 * 180.02562 * 18 16 15 32 32 H 1.08999 * 109.54261 * 299.82213 * 19 2 1 33 33 H 1.09005 * 109.51943 * 303.05592 * 20 19 2 34 34 H 1.09000 * 109.52255 * 63.24682 * 20 19 2 35 35 H 1.09003 * 109.48464 * 297.62002 * 21 20 19 36 36 H 1.09008 * 109.47402 * 177.59164 * 21 20 19 37 37 H 1.08997 * 109.48526 * 301.17502 * 23 22 21 38 38 H 1.09010 * 109.47824 * 181.13694 * 23 22 21 39 39 H 1.09006 * 109.51951 * 182.48231 * 24 23 22 40 40 H 1.09004 * 109.52911 * 62.29453 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5331 -1.8108 1.1335 6 7 1.9250 -0.1229 2.4387 7 6 1.4060 1.1417 2.5424 8 1 0.8003 1.5440 1.7438 9 6 1.6542 1.9038 3.6775 10 7 2.6879 1.6283 4.4406 11 14 0.5187 3.3199 4.1185 12 1 -0.5740 2.8241 4.9934 13 1 1.2894 4.3678 4.8349 14 1 -0.0622 3.8935 2.8780 15 6 2.3633 -0.8357 3.6413 16 6 3.8242 -0.5581 3.8855 17 8 4.4365 0.1617 3.1325 18 8 4.4451 -1.1096 4.9400 19 6 2.0401 -0.7213 -1.2492 20 6 3.5718 -0.7125 -1.2564 21 6 4.0719 -1.3661 -2.5473 22 8 3.5366 -0.6663 -3.6724 23 6 2.1095 -0.6816 -3.7438 24 6 1.5305 -0.0005 -2.5010 25 1 -0.3633 -1.0201 -0.1252 26 1 -0.3634 0.4016 0.9459 27 1 -0.3633 0.6183 -0.8209 28 1 2.8610 2.1601 5.2333 29 1 1.7808 -0.4958 4.4976 30 1 2.2151 -1.9067 3.5031 31 1 5.3825 -0.9020 5.0554 32 1 1.6800 -1.7501 -1.2488 33 1 3.9304 0.3156 -1.2060 34 1 3.9433 -1.2714 -0.3975 35 1 3.7470 -2.4061 -2.5778 36 1 5.1608 -1.3242 -2.5776 37 1 1.7588 -1.7126 -3.7899 38 1 1.7844 -0.1466 -4.6362 39 1 0.4420 -0.0502 -2.5323 40 1 1.8478 1.0420 -2.4757 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833402436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:50 Heat of formation + Delta-G solvation = -174.839814 kcal Electronic energy + Delta-G solvation = -24416.528430 eV Core-core repulsion = 20810.416362 eV Total energy + Delta-G solvation = -3606.112068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.79825 -38.94257 -37.99646 -35.36504 -34.54067 -34.41650 -31.68533 -30.84317 -30.57343 -27.67395 -25.28788 -24.73989 -23.33344 -22.16202 -20.64863 -19.65853 -18.99782 -17.07058 -16.79456 -16.35395 -15.71075 -15.66494 -15.50690 -14.72297 -14.47744 -14.39797 -14.25937 -13.81564 -13.49665 -13.28531 -12.90512 -12.63650 -12.03762 -11.87658 -11.64895 -11.56253 -11.39050 -11.30480 -11.11066 -11.01468 -10.87202 -10.51838 -10.32936 -10.23651 -10.12358 -10.06578 -9.88074 -9.49593 -9.20296 -9.05369 -8.42292 -7.94877 -6.53014 -4.03287 3.04897 3.15614 3.18184 3.63539 3.78090 4.01727 4.11213 4.31558 4.62989 4.96890 5.09073 5.17684 5.22410 5.34310 5.49364 5.65746 5.73493 5.80410 5.85795 5.94944 5.98056 6.10994 6.19780 6.24868 6.35820 6.39443 6.45607 6.52698 6.56349 6.69545 6.71588 6.84481 6.92724 7.35382 7.43763 7.57292 7.72175 8.21080 8.95912 9.28572 9.37171 9.76262 10.54217 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.006229 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.382268 B = 4493.696130 C = 5457.419630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 H 0.091 0.909 4 C 0.479 3.521 5 O -0.601 6.601 6 N -0.429 5.429 7 C -0.339 4.339 8 H 0.109 0.891 9 C 0.038 3.962 10 N -0.863 5.863 11 Si 0.924 3.076 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.269 1.269 15 C 0.159 3.841 16 C 0.499 3.501 17 O -0.501 6.501 18 O -0.540 6.540 19 C -0.064 4.064 20 C -0.153 4.153 21 C 0.064 3.936 22 O -0.390 6.390 23 C 0.063 3.937 24 C -0.152 4.152 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.389 0.611 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 -2.840 -6.342 7.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.109 0.891 4 C 0.268 3.732 5 O -0.488 6.488 6 N -0.148 5.148 7 C -0.466 4.466 8 H 0.126 0.874 9 C -0.168 4.168 10 N -0.501 5.501 11 Si 0.750 3.250 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.193 1.193 15 C 0.033 3.967 16 C 0.339 3.661 17 O -0.386 6.386 18 O -0.351 6.351 19 C -0.083 4.083 20 C -0.190 4.190 21 C -0.012 4.012 22 O -0.309 6.309 23 C -0.014 4.014 24 C -0.190 4.190 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.101 0.899 31 H 0.245 0.755 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.860 -3.072 -6.602 7.823 hybrid contribution 0.065 1.090 0.873 1.398 sum -2.795 -1.982 -5.728 6.675 Atomic orbital electron populations 1.21827 0.94150 1.01398 1.02805 1.20996 0.96484 1.00722 0.92486 0.89131 1.20171 0.81798 0.86847 0.84341 1.90493 1.49575 1.22584 1.86106 1.43395 1.53457 1.14797 1.03126 1.19728 1.29927 0.90949 1.06023 0.87366 1.25256 0.95467 0.98742 0.97316 1.69763 1.23211 1.41032 1.16076 0.85973 0.79825 0.80168 0.79002 1.20196 1.21036 1.19316 1.20286 0.88873 0.96434 0.91101 1.23485 0.90369 0.75609 0.76678 1.90547 1.66763 1.33957 1.47325 1.84511 1.29342 1.71155 1.50126 1.20926 0.95265 0.99427 0.92662 1.22296 0.95943 1.02101 0.98680 1.22594 0.98363 0.94691 0.85597 1.87865 1.20269 1.76272 1.46519 1.22528 0.81345 0.99562 0.97931 1.22312 1.00787 1.00758 0.95136 0.93132 0.90689 0.92704 0.91798 0.87308 0.89937 0.75516 0.90861 0.91800 0.88808 0.93490 0.89410 0.93589 0.89480 0.90895 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.24 37.16 0.31 -2.05 16 2 C -0.09 -1.64 1.47 -91.77 -0.14 -1.78 16 3 H 0.09 1.84 7.42 -51.93 -0.39 1.46 16 4 C 0.48 11.09 6.39 -10.98 -0.07 11.02 16 5 O -0.60 -14.96 13.88 5.55 0.08 -14.88 16 6 N -0.43 -10.40 2.11 -116.09 -0.25 -10.65 16 7 C -0.34 -8.21 8.30 -14.93 -0.12 -8.34 16 8 H 0.11 2.45 5.11 -52.48 -0.27 2.18 16 9 C 0.04 0.91 4.86 -17.47 -0.08 0.83 16 10 N -0.86 -22.20 8.68 55.50 0.48 -21.71 16 11 Si 0.92 18.95 29.60 -169.99 -5.03 13.92 16 12 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 15 C 0.16 3.73 5.21 -5.19 -0.03 3.70 16 16 C 0.50 12.10 6.26 36.01 0.23 12.32 16 17 O -0.50 -13.87 16.28 -18.75 -0.31 -14.18 16 18 O -0.54 -10.91 13.42 -39.24 -0.53 -11.43 16 19 C -0.06 -1.09 1.47 -90.44 -0.13 -1.22 16 20 C -0.15 -2.76 5.06 -26.59 -0.13 -2.90 16 21 C 0.06 0.99 6.84 37.21 0.25 1.24 16 22 O -0.39 -6.08 10.77 -35.23 -0.38 -6.46 16 23 C 0.06 0.82 6.84 37.20 0.25 1.08 16 24 C -0.15 -2.12 4.98 -26.59 -0.13 -2.25 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.07 1.31 6.07 -51.93 -0.32 0.99 16 27 H 0.05 0.75 6.91 -51.93 -0.36 0.39 16 28 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.11 2.52 6.90 -51.93 -0.36 2.16 16 30 H 0.08 1.82 7.50 -51.93 -0.39 1.43 16 31 H 0.39 6.20 9.10 45.56 0.41 6.61 16 32 H 0.07 1.30 7.96 -51.93 -0.41 0.89 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.98 6.12 -51.93 -0.32 1.67 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.24 8.14 -51.92 -0.42 0.81 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.95 8.14 -51.92 -0.42 0.52 16 39 H 0.07 0.89 6.79 -51.93 -0.35 0.53 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 317.16 15.07 4.78 4.78 Total: -1.00 -30.72 317.16 -5.79 -36.51 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -4.84 Total: 12.43 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 0.20 Total: 11.67 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.24 Total: -32.36 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -1.13 Total: -46.95 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.72 -5.79 -36.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833402436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.329 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds