Wall clock time and date at job start Tue Mar 31 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47209 * 2 1 4 4 C 1.50704 * 109.47084 * 119.99913 * 2 1 3 5 5 O 1.21290 * 120.00190 * 107.54912 * 4 2 1 6 6 N 1.34774 * 119.99770 * 287.55191 * 4 2 1 7 7 C 1.37095 * 120.00322 * 357.50294 * 6 4 2 8 8 H 1.08007 * 119.99956 * 19.73895 * 7 6 4 9 9 C 1.38951 * 120.00415 * 199.46207 * 7 6 4 10 10 N 1.31408 * 119.99821 * 21.60195 * 9 7 6 11 11 Si 1.86801 * 120.00189 * 201.60026 * 9 7 6 12 12 H 1.48498 * 109.47072 * 89.99881 * 11 9 7 13 13 H 1.48501 * 109.47113 * 209.99907 * 11 9 7 14 14 H 1.48504 * 109.47216 * 330.00368 * 11 9 7 15 15 C 1.46506 * 119.99857 * 177.50999 * 6 4 2 16 16 C 1.50699 * 109.47361 * 88.71736 * 15 6 4 17 17 O 1.20831 * 119.99859 * 0.02562 * 16 15 6 18 18 O 1.34222 * 119.99996 * 179.97438 * 16 15 6 19 19 C 1.52999 * 109.47615 * 239.99852 * 2 1 3 20 20 C 1.53177 * 109.54497 * 179.55664 * 19 2 1 21 21 C 1.53094 * 109.15921 * 183.15369 * 20 19 2 22 22 O 1.42900 * 109.41923 * 57.61086 * 21 20 19 23 23 C 1.42901 * 114.09248 * 298.83818 * 22 21 20 24 24 C 1.53091 * 109.41462 * 61.16124 * 23 22 21 25 25 H 1.09004 * 109.46925 * 173.00526 * 1 2 3 26 26 H 1.08995 * 109.47664 * 293.00409 * 1 2 3 27 27 H 1.09005 * 109.47011 * 53.01099 * 1 2 3 28 28 H 0.97006 * 119.99672 * 180.02562 * 10 9 7 29 29 H 1.08998 * 109.46564 * 208.71753 * 15 6 4 30 30 H 1.08997 * 109.46784 * 328.71493 * 15 6 4 31 31 H 0.96702 * 116.99678 * 180.02562 * 18 16 15 32 32 H 1.08999 * 109.54261 * 299.82213 * 19 2 1 33 33 H 1.09005 * 109.51943 * 303.05592 * 20 19 2 34 34 H 1.09000 * 109.52255 * 63.24682 * 20 19 2 35 35 H 1.09003 * 109.48464 * 297.62002 * 21 20 19 36 36 H 1.09008 * 109.47402 * 177.59164 * 21 20 19 37 37 H 1.08997 * 109.48526 * 301.17502 * 23 22 21 38 38 H 1.09010 * 109.47824 * 181.13694 * 23 22 21 39 39 H 1.09006 * 109.51951 * 182.48231 * 24 23 22 40 40 H 1.09004 * 109.52911 * 62.29453 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5331 -1.8108 1.1335 6 7 1.9250 -0.1229 2.4387 7 6 1.4060 1.1417 2.5424 8 1 0.8003 1.5440 1.7438 9 6 1.6542 1.9038 3.6775 10 7 2.6879 1.6283 4.4406 11 14 0.5187 3.3199 4.1185 12 1 -0.5740 2.8241 4.9934 13 1 1.2894 4.3678 4.8349 14 1 -0.0622 3.8935 2.8780 15 6 2.3633 -0.8357 3.6413 16 6 3.8242 -0.5581 3.8855 17 8 4.4365 0.1617 3.1325 18 8 4.4451 -1.1096 4.9400 19 6 2.0401 -0.7213 -1.2492 20 6 3.5718 -0.7125 -1.2564 21 6 4.0719 -1.3661 -2.5473 22 8 3.5366 -0.6663 -3.6724 23 6 2.1095 -0.6816 -3.7438 24 6 1.5305 -0.0005 -2.5010 25 1 -0.3633 -1.0201 -0.1252 26 1 -0.3634 0.4016 0.9459 27 1 -0.3633 0.6183 -0.8209 28 1 2.8610 2.1601 5.2333 29 1 1.7808 -0.4958 4.4976 30 1 2.2151 -1.9067 3.5031 31 1 5.3825 -0.9020 5.0554 32 1 1.6800 -1.7501 -1.2488 33 1 3.9304 0.3156 -1.2060 34 1 3.9433 -1.2714 -0.3975 35 1 3.7470 -2.4061 -2.5778 36 1 5.1608 -1.3242 -2.5776 37 1 1.7588 -1.7126 -3.7899 38 1 1.7844 -0.1466 -4.6362 39 1 0.4420 -0.0502 -2.5323 40 1 1.8478 1.0420 -2.4757 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833402436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:49 Heat of formation + Delta-G solvation = -195.301545 kcal Electronic energy + Delta-G solvation = -24417.415717 eV Core-core repulsion = 20810.416362 eV Total energy + Delta-G solvation = -3606.999355 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45157 -40.56410 -39.59908 -37.09125 -36.33384 -36.04552 -33.52744 -32.20879 -31.84192 -29.46198 -26.92126 -26.25255 -24.58114 -23.68898 -22.31664 -21.12889 -20.69330 -18.88772 -18.58468 -18.02976 -17.36773 -17.01099 -16.86369 -16.34930 -16.14262 -16.11132 -15.85508 -15.20438 -15.05919 -14.78977 -14.38219 -13.98887 -13.74328 -13.54984 -13.25381 -13.11261 -12.92815 -12.71327 -12.69185 -12.43789 -12.21524 -12.12890 -12.03705 -11.94198 -11.65908 -11.44631 -11.38955 -11.11552 -10.95656 -10.46130 -10.17285 -9.83175 -8.37273 -5.92909 1.41874 1.48873 1.59336 1.83715 1.90870 2.29610 2.57330 2.90282 3.00318 3.18739 3.74620 3.89287 3.92409 4.14009 4.24219 4.30463 4.43819 4.48393 4.51809 4.57103 4.64332 4.70029 4.79847 4.87899 4.90923 4.98136 5.00054 5.08112 5.14274 5.18249 5.30025 5.38075 5.52269 5.59402 5.76088 5.98965 6.29008 6.34826 7.09872 7.45872 7.54125 7.92999 8.69947 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.006229 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.382268 B = 4493.696130 C = 5457.419630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.082 4.082 3 H 0.075 0.925 4 C 0.467 3.533 5 O -0.625 6.625 6 N -0.442 5.442 7 C -0.351 4.351 8 H 0.122 0.878 9 C -0.008 4.008 10 N -0.894 5.894 11 Si 0.991 3.009 12 H -0.268 1.268 13 H -0.294 1.294 14 H -0.256 1.256 15 C 0.156 3.844 16 C 0.502 3.498 17 O -0.543 6.543 18 O -0.528 6.528 19 C -0.060 4.060 20 C -0.150 4.150 21 C 0.071 3.929 22 O -0.402 6.402 23 C 0.057 3.943 24 C -0.144 4.144 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.268 0.732 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.409 0.591 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.786 -2.390 -7.759 9.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 H 0.093 0.907 4 C 0.258 3.742 5 O -0.513 6.513 6 N -0.160 5.160 7 C -0.477 4.477 8 H 0.139 0.861 9 C -0.209 4.209 10 N -0.532 5.532 11 Si 0.815 3.185 12 H -0.194 1.194 13 H -0.221 1.221 14 H -0.180 1.180 15 C 0.029 3.971 16 C 0.344 3.656 17 O -0.431 6.431 18 O -0.340 6.340 19 C -0.079 4.079 20 C -0.188 4.188 21 C -0.005 4.005 22 O -0.321 6.321 23 C -0.019 4.019 24 C -0.182 4.182 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.268 0.732 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.134 0.866 39 H 0.117 0.883 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.601 -2.641 -8.012 9.609 hybrid contribution 0.683 0.877 1.359 1.756 sum -3.918 -1.763 -6.653 7.920 Atomic orbital electron populations 1.21791 0.91557 1.02534 1.03508 1.21034 0.98568 0.99325 0.91401 0.90661 1.20990 0.81160 0.86772 0.85248 1.90464 1.50435 1.23765 1.86603 1.43645 1.53702 1.15086 1.03617 1.20133 1.29903 0.91095 1.06606 0.86086 1.26138 0.96430 1.01248 0.97105 1.69867 1.24689 1.42253 1.16436 0.84940 0.77770 0.76800 0.78955 1.19350 1.22091 1.17993 1.20346 0.88595 0.96855 0.91261 1.23630 0.90658 0.74756 0.76590 1.90522 1.67734 1.35966 1.48914 1.84442 1.30992 1.70231 1.48344 1.20913 0.94276 0.99326 0.93408 1.22205 0.97143 1.00616 0.98865 1.22502 0.98973 0.94766 0.84277 1.87858 1.22010 1.76305 1.45922 1.22786 0.79876 1.00736 0.98466 1.22283 1.02335 0.99974 0.93597 0.92391 0.91915 0.89373 0.92162 0.87364 0.89180 0.73184 0.91412 0.93512 0.92564 0.92565 0.88556 0.92332 0.86621 0.88262 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 8.24 71.98 0.59 -3.56 16 2 C -0.08 -3.11 1.47 -11.54 -0.02 -3.12 16 3 H 0.08 3.07 7.42 -2.39 -0.02 3.05 16 4 C 0.47 22.01 6.39 87.66 0.56 22.57 16 5 O -0.62 -31.88 13.88 -3.06 -0.04 -31.93 16 6 N -0.44 -21.77 2.11 -639.59 -1.35 -23.12 16 7 C -0.35 -17.00 8.30 84.04 0.70 -16.30 16 8 H 0.12 5.40 5.11 -2.91 -0.01 5.38 16 9 C -0.01 -0.36 4.86 84.93 0.41 0.05 16 10 N -0.89 -46.54 8.68 21.66 0.19 -46.35 16 11 Si 0.99 38.43 29.60 68.60 2.03 40.46 16 12 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 13 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 14 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 15 C 0.16 7.43 5.21 85.63 0.45 7.88 16 16 C 0.50 24.84 6.26 71.24 0.45 25.29 16 17 O -0.54 -30.95 16.28 21.95 0.36 -30.59 16 18 O -0.53 -21.30 13.42 -51.34 -0.69 -21.99 16 19 C -0.06 -2.01 1.47 -10.68 -0.02 -2.02 16 20 C -0.15 -5.54 5.06 30.68 0.16 -5.38 16 21 C 0.07 2.15 6.84 72.01 0.49 2.64 16 22 O -0.40 -11.67 10.77 -148.98 -1.60 -13.28 16 23 C 0.06 1.31 6.84 72.01 0.49 1.80 16 24 C -0.14 -3.60 4.98 30.68 0.15 -3.45 16 25 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.06 2.07 6.07 -2.39 -0.01 2.06 16 27 H 0.09 2.09 6.91 -2.38 -0.02 2.07 16 28 H 0.27 13.48 8.31 -92.70 -0.77 12.71 16 29 H 0.11 5.11 6.90 -2.39 -0.02 5.10 16 30 H 0.09 4.07 7.50 -2.39 -0.02 4.05 16 31 H 0.41 12.88 9.10 -74.06 -0.67 12.21 16 32 H 0.07 2.33 7.96 -2.39 -0.02 2.31 16 33 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.06 2.48 6.12 -2.39 -0.01 2.47 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.10 1.98 6.79 -2.38 -0.02 1.96 16 40 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -67.17 317.16 3.70 -63.47 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: 0.39 Total: 36.93 kcal Atomic # 6 Polarization: 21.97 SS G_CDS: 4.42 Total: 26.39 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -1.16 Total: -69.47 kcal Atomic # 8 Polarization: -95.80 SS G_CDS: -1.98 Total: -97.78 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -67.17 3.70 -63.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833402436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.828 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds