Wall clock time and date at job start Tue Mar 31 2020 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47316 * 2 1 4 4 C 1.50699 * 109.46933 * 240.00240 * 2 1 3 5 5 O 1.21294 * 120.00185 * 254.38158 * 4 2 1 6 6 N 1.34779 * 120.00071 * 74.37681 * 4 2 1 7 7 C 1.37101 * 120.00095 * 5.01719 * 6 4 2 8 8 H 1.07997 * 120.00109 * 233.09253 * 7 6 4 9 9 C 1.38951 * 119.99512 * 53.09071 * 7 6 4 10 10 N 1.31417 * 119.99657 * 202.87767 * 9 7 6 11 11 Si 1.86793 * 120.00626 * 22.87679 * 9 7 6 12 12 H 1.48501 * 109.47133 * 95.22769 * 11 9 7 13 13 H 1.48504 * 109.47613 * 215.23029 * 11 9 7 14 14 H 1.48507 * 109.46931 * 335.22708 * 11 9 7 15 15 C 1.46501 * 119.99950 * 185.01380 * 6 4 2 16 16 C 1.50705 * 109.47023 * 85.61418 * 15 6 4 17 17 O 1.20827 * 119.99928 * 359.97438 * 16 15 6 18 18 O 1.34225 * 119.99892 * 179.97438 * 16 15 6 19 19 C 1.52997 * 109.47370 * 120.00021 * 2 1 3 20 20 C 1.53176 * 109.54725 * 299.99891 * 19 2 1 21 21 C 1.53092 * 109.21615 * 183.18350 * 20 19 2 22 22 O 1.42903 * 109.41551 * 57.57684 * 21 20 19 23 23 C 1.42901 * 114.09761 * 298.84501 * 22 21 20 24 24 C 1.53087 * 109.41660 * 61.15449 * 23 22 21 25 25 H 1.09005 * 109.47081 * 296.40153 * 1 2 3 26 26 H 1.08997 * 109.47331 * 56.40045 * 1 2 3 27 27 H 1.08995 * 109.47447 * 176.41051 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 29 29 H 1.09003 * 109.46916 * 205.61192 * 15 6 4 30 30 H 1.09000 * 109.47466 * 325.61088 * 15 6 4 31 31 H 0.96696 * 116.99800 * 179.97438 * 18 16 15 32 32 H 1.09003 * 109.61273 * 60.22406 * 19 2 1 33 33 H 1.09003 * 109.51816 * 63.24365 * 20 19 2 34 34 H 1.09000 * 109.52066 * 303.12148 * 20 19 2 35 35 H 1.09001 * 109.47666 * 177.56169 * 21 20 19 36 36 H 1.08996 * 109.47613 * 297.59049 * 21 20 19 37 37 H 1.09001 * 109.47964 * 181.14297 * 23 22 21 38 38 H 1.09004 * 109.47537 * 301.16328 * 23 22 21 39 39 H 1.09000 * 109.52421 * 62.30160 * 24 23 22 40 40 H 1.09008 * 109.52172 * 182.42140 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.5010 -1.8252 -1.1383 6 7 1.9605 -0.1069 -2.4335 7 6 1.5267 1.1905 -2.5249 8 1 0.7203 1.4442 -3.1969 9 6 2.1247 2.1788 -1.7527 10 7 1.4710 3.2862 -1.4816 11 14 3.8576 1.9337 -1.0998 12 1 4.8295 2.5712 -2.0241 13 1 3.9726 2.5542 0.2444 14 1 4.1483 0.4808 -1.0008 15 6 2.3461 -0.8372 -3.6435 16 6 1.1686 -1.6314 -4.1476 17 8 0.1156 -1.5917 -3.5565 18 8 1.2897 -2.3827 -5.2533 19 6 2.0400 -0.7212 1.2492 20 6 1.5304 -0.0005 2.5011 21 6 2.1095 -0.6802 3.7446 22 8 3.5366 -0.6651 3.6732 23 6 4.0720 -1.3660 2.5489 24 6 3.5718 -0.7138 1.2573 25 1 -0.3633 0.4570 0.9205 26 1 -0.3634 0.5687 -0.8559 27 1 -0.3634 -1.0256 -0.0643 28 1 1.8881 3.9760 -0.9422 29 1 2.6619 -0.1294 -4.4100 30 1 3.1688 -1.5140 -3.4128 31 1 0.5073 -2.8745 -5.5377 32 1 1.6813 -1.7505 1.2495 33 1 0.4420 -0.0502 2.5322 34 1 1.8469 1.0422 2.4752 35 1 1.7844 -0.1443 4.6364 36 1 1.7587 -1.7111 3.7918 37 1 5.1608 -1.3241 2.5793 38 1 3.7472 -2.4060 2.5806 39 1 3.9305 0.3142 1.2057 40 1 3.9443 -1.2730 0.3989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833402437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:53 Heat of formation + Delta-G solvation = -170.493042 kcal Electronic energy + Delta-G solvation = -24780.010500 eV Core-core repulsion = 21174.086922 eV Total energy + Delta-G solvation = -3605.923578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13486 -39.42735 -38.33322 -35.69080 -34.87998 -34.66663 -32.22230 -30.90426 -30.42455 -28.06934 -25.09039 -24.58305 -23.43030 -22.45669 -20.97092 -19.97641 -18.95479 -17.64056 -17.42763 -16.24006 -15.91154 -15.76037 -15.44042 -15.26399 -14.93266 -14.77565 -14.29095 -13.83631 -13.56722 -13.13463 -12.91618 -12.84123 -12.64377 -12.33716 -11.73239 -11.66010 -11.41078 -11.33684 -11.21848 -11.11736 -10.94370 -10.77858 -10.62756 -10.30246 -10.13491 -10.05859 -9.93909 -9.70017 -9.19175 -9.01606 -8.61019 -7.79817 -6.60056 -4.34661 2.80448 3.03998 3.16781 3.20079 3.29978 3.86004 4.01941 4.10471 4.33815 4.76174 5.07469 5.15051 5.23562 5.32922 5.47362 5.64733 5.71526 5.79395 5.84111 5.86970 5.97418 5.98591 6.03019 6.08832 6.19513 6.27702 6.39866 6.45544 6.55729 6.66662 6.69457 6.93152 6.97282 7.17915 7.41885 7.51829 7.58115 8.37976 8.42948 8.85675 9.13019 9.55755 10.47916 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017103 B = 0.007396 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.717744 B = 3785.063501 C = 4379.271342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 H 0.097 0.903 4 C 0.515 3.485 5 O -0.589 6.589 6 N -0.459 5.459 7 C -0.352 4.352 8 H 0.097 0.903 9 C 0.084 3.916 10 N -0.845 5.845 11 Si 0.843 3.157 12 H -0.277 1.277 13 H -0.274 1.274 14 H -0.247 1.247 15 C 0.116 3.884 16 C 0.461 3.539 17 O -0.502 6.502 18 O -0.527 6.527 19 C -0.070 4.070 20 C -0.154 4.154 21 C 0.064 3.936 22 O -0.389 6.389 23 C 0.065 3.935 24 C -0.160 4.160 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.277 0.723 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.399 0.601 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.660 -5.999 2.846 6.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.112 4.112 3 H 0.115 0.885 4 C 0.306 3.694 5 O -0.472 6.472 6 N -0.181 5.181 7 C -0.479 4.479 8 H 0.115 0.885 9 C -0.125 4.125 10 N -0.478 5.478 11 Si 0.667 3.333 12 H -0.203 1.203 13 H -0.200 1.200 14 H -0.171 1.171 15 C -0.010 4.010 16 C 0.301 3.699 17 O -0.388 6.388 18 O -0.339 6.339 19 C -0.089 4.089 20 C -0.192 4.192 21 C -0.013 4.013 22 O -0.308 6.308 23 C -0.012 4.012 24 C -0.197 4.197 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.134 0.866 30 H 0.122 0.878 31 H 0.257 0.743 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.031 -6.014 3.402 7.202 hybrid contribution 0.114 -0.189 -0.292 0.366 sum 2.145 -6.203 3.110 7.263 Atomic orbital electron populations 1.21543 0.92879 1.01211 1.02795 1.21156 0.98053 1.00705 0.91281 0.88473 1.20582 0.78271 0.85058 0.85458 1.90495 1.48927 1.20856 1.86954 1.43331 1.60284 1.12092 1.02367 1.18817 1.18311 0.80757 1.30008 0.88537 1.25500 0.97210 0.94738 0.95090 1.69764 1.36258 1.07899 1.33895 0.87388 0.86097 0.80734 0.79034 1.20283 1.19961 1.17054 1.20986 0.92141 0.96355 0.91474 1.24647 0.91320 0.76927 0.77020 1.90682 1.30120 1.61438 1.56553 1.84563 1.45769 1.58990 1.44543 1.21008 0.94776 0.99807 0.93336 1.22328 1.01228 1.00785 0.94827 1.22552 0.81101 0.99643 0.98021 1.87863 1.20479 1.76174 1.46328 1.22567 0.98302 0.94770 0.85536 1.22494 0.96549 1.01755 0.98901 0.92891 0.89982 0.93778 0.91198 0.86597 0.87783 0.74345 0.90601 0.90408 0.91094 0.89275 0.93449 0.89416 0.93277 0.92109 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.82 37.16 0.33 -2.27 16 2 C -0.09 -1.96 1.08 -91.78 -0.10 -2.06 16 3 H 0.10 2.25 3.50 -51.93 -0.18 2.07 16 4 C 0.52 12.07 3.96 -10.98 -0.04 12.03 16 5 O -0.59 -14.35 13.99 5.54 0.08 -14.27 16 6 N -0.46 -10.65 1.44 -116.09 -0.17 -10.82 16 7 C -0.35 -8.80 8.01 -14.93 -0.12 -8.92 16 8 H 0.10 2.63 8.06 -52.49 -0.42 2.21 16 9 C 0.08 2.10 3.85 -17.47 -0.07 2.03 16 10 N -0.84 -21.99 13.96 55.50 0.77 -21.21 16 11 Si 0.84 19.30 23.22 -169.99 -3.95 15.35 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.25 -5.64 4.72 56.52 0.27 -5.38 16 15 C 0.12 2.28 5.97 -5.19 -0.03 2.25 16 16 C 0.46 8.89 8.37 36.01 0.30 9.19 16 17 O -0.50 -11.44 17.10 -18.75 -0.32 -11.76 16 18 O -0.53 -7.81 13.42 -39.25 -0.53 -8.34 16 19 C -0.07 -1.32 1.47 -90.43 -0.13 -1.46 16 20 C -0.15 -2.47 4.97 -26.59 -0.13 -2.60 16 21 C 0.06 0.90 6.84 37.21 0.25 1.16 16 22 O -0.39 -6.38 10.77 -35.23 -0.38 -6.76 16 23 C 0.06 1.03 6.84 37.20 0.25 1.28 16 24 C -0.16 -3.00 3.95 -26.59 -0.10 -3.10 16 25 H 0.05 0.94 6.32 -51.93 -0.33 0.61 16 26 H 0.08 1.89 7.03 -51.93 -0.37 1.52 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.12 2.01 8.00 -51.93 -0.42 1.60 16 30 H 0.10 1.95 7.49 -51.93 -0.39 1.56 16 31 H 0.40 4.11 9.10 45.56 0.41 4.53 16 32 H 0.08 1.45 7.94 -51.93 -0.41 1.04 16 33 H 0.08 1.13 6.54 -51.93 -0.34 0.79 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.21 6.01 -51.93 -0.31 0.90 16 40 H 0.09 1.88 5.90 -51.92 -0.31 1.57 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -30.47 310.03 -4.27 -34.74 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -4.86 Total: 10.88 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 0.41 Total: 7.52 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.61 Total: -32.03 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.15 Total: -41.13 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -3.95 Total: 15.35 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.47 -4.27 -34.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833402437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.750 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds