Wall clock time and date at job start Tue Mar 31 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47316 * 2 1 4 4 C 1.50699 * 109.46933 * 240.00240 * 2 1 3 5 5 O 1.21294 * 120.00185 * 254.38158 * 4 2 1 6 6 N 1.34779 * 120.00071 * 74.37681 * 4 2 1 7 7 C 1.37101 * 120.00095 * 5.01719 * 6 4 2 8 8 H 1.07997 * 120.00109 * 233.09253 * 7 6 4 9 9 C 1.38951 * 119.99512 * 53.09071 * 7 6 4 10 10 N 1.31417 * 119.99657 * 202.87767 * 9 7 6 11 11 Si 1.86793 * 120.00626 * 22.87679 * 9 7 6 12 12 H 1.48501 * 109.47133 * 95.22769 * 11 9 7 13 13 H 1.48504 * 109.47613 * 215.23029 * 11 9 7 14 14 H 1.48507 * 109.46931 * 335.22708 * 11 9 7 15 15 C 1.46501 * 119.99950 * 185.01380 * 6 4 2 16 16 C 1.50705 * 109.47023 * 85.61418 * 15 6 4 17 17 O 1.20827 * 119.99928 * 359.97438 * 16 15 6 18 18 O 1.34225 * 119.99892 * 179.97438 * 16 15 6 19 19 C 1.52997 * 109.47370 * 120.00021 * 2 1 3 20 20 C 1.53176 * 109.54725 * 299.99891 * 19 2 1 21 21 C 1.53092 * 109.21615 * 183.18350 * 20 19 2 22 22 O 1.42903 * 109.41551 * 57.57684 * 21 20 19 23 23 C 1.42901 * 114.09761 * 298.84501 * 22 21 20 24 24 C 1.53087 * 109.41660 * 61.15449 * 23 22 21 25 25 H 1.09005 * 109.47081 * 296.40153 * 1 2 3 26 26 H 1.08997 * 109.47331 * 56.40045 * 1 2 3 27 27 H 1.08995 * 109.47447 * 176.41051 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 29 29 H 1.09003 * 109.46916 * 205.61192 * 15 6 4 30 30 H 1.09000 * 109.47466 * 325.61088 * 15 6 4 31 31 H 0.96696 * 116.99800 * 179.97438 * 18 16 15 32 32 H 1.09003 * 109.61273 * 60.22406 * 19 2 1 33 33 H 1.09003 * 109.51816 * 63.24365 * 20 19 2 34 34 H 1.09000 * 109.52066 * 303.12148 * 20 19 2 35 35 H 1.09001 * 109.47666 * 177.56169 * 21 20 19 36 36 H 1.08996 * 109.47613 * 297.59049 * 21 20 19 37 37 H 1.09001 * 109.47964 * 181.14297 * 23 22 21 38 38 H 1.09004 * 109.47537 * 301.16328 * 23 22 21 39 39 H 1.09000 * 109.52421 * 62.30160 * 24 23 22 40 40 H 1.09008 * 109.52172 * 182.42140 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.5010 -1.8252 -1.1383 6 7 1.9605 -0.1069 -2.4335 7 6 1.5267 1.1905 -2.5249 8 1 0.7203 1.4442 -3.1969 9 6 2.1247 2.1788 -1.7527 10 7 1.4710 3.2862 -1.4816 11 14 3.8576 1.9337 -1.0998 12 1 4.8295 2.5712 -2.0241 13 1 3.9726 2.5542 0.2444 14 1 4.1483 0.4808 -1.0008 15 6 2.3461 -0.8372 -3.6435 16 6 1.1686 -1.6314 -4.1476 17 8 0.1156 -1.5917 -3.5565 18 8 1.2897 -2.3827 -5.2533 19 6 2.0400 -0.7212 1.2492 20 6 1.5304 -0.0005 2.5011 21 6 2.1095 -0.6802 3.7446 22 8 3.5366 -0.6651 3.6732 23 6 4.0720 -1.3660 2.5489 24 6 3.5718 -0.7138 1.2573 25 1 -0.3633 0.4570 0.9205 26 1 -0.3634 0.5687 -0.8559 27 1 -0.3634 -1.0256 -0.0643 28 1 1.8881 3.9760 -0.9422 29 1 2.6619 -0.1294 -4.4100 30 1 3.1688 -1.5140 -3.4128 31 1 0.5073 -2.8745 -5.5377 32 1 1.6813 -1.7505 1.2495 33 1 0.4420 -0.0502 2.5322 34 1 1.8469 1.0422 2.4752 35 1 1.7844 -0.1443 4.6364 36 1 1.7587 -1.7111 3.7918 37 1 5.1608 -1.3241 2.5793 38 1 3.7472 -2.4060 2.5806 39 1 3.9305 0.3142 1.2057 40 1 3.9443 -1.2730 0.3989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833402437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:52 Heat of formation + Delta-G solvation = -192.301167 kcal Electronic energy + Delta-G solvation = -24780.956172 eV Core-core repulsion = 21174.086922 eV Total energy + Delta-G solvation = -3606.869249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77584 -40.89173 -39.79698 -37.17645 -36.61207 -36.25823 -34.11316 -32.26814 -31.85786 -29.72427 -26.69261 -26.35265 -24.76386 -23.94702 -22.44812 -21.51400 -20.66474 -19.24175 -19.10042 -17.81632 -17.34022 -17.19259 -16.92704 -16.88242 -16.51890 -16.37577 -15.78929 -15.43199 -15.04308 -14.84178 -14.54619 -14.48133 -14.14279 -13.86412 -13.27447 -13.21977 -13.02009 -12.99273 -12.91643 -12.59250 -12.46392 -12.28093 -12.25101 -12.03575 -11.74519 -11.59195 -11.39937 -11.16518 -10.93597 -10.54101 -10.33726 -9.66183 -8.56284 -6.32400 1.20089 1.26779 1.30438 1.36086 1.65969 2.12917 2.19775 2.68814 2.84189 2.95645 3.64639 3.76436 3.85112 4.05979 4.14073 4.25657 4.32328 4.41080 4.43293 4.44783 4.49314 4.52955 4.63991 4.72858 4.81003 4.84734 4.89598 4.99244 5.08418 5.11628 5.19408 5.42920 5.46790 5.59287 5.67606 5.71338 6.23820 6.37024 6.91168 7.04055 7.25849 7.70028 8.55308 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017103 B = 0.007396 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.717744 B = 3785.063501 C = 4379.271342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.095 4.095 3 H 0.081 0.919 4 C 0.508 3.492 5 O -0.601 6.601 6 N -0.468 5.468 7 C -0.348 4.348 8 H 0.065 0.935 9 C 0.063 3.937 10 N -0.875 5.875 11 Si 0.889 3.111 12 H -0.273 1.273 13 H -0.274 1.274 14 H -0.249 1.249 15 C 0.105 3.895 16 C 0.470 3.530 17 O -0.544 6.544 18 O -0.508 6.508 19 C -0.069 4.069 20 C -0.151 4.151 21 C 0.062 3.938 22 O -0.401 6.401 23 C 0.069 3.931 24 C -0.159 4.159 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.282 0.718 29 H 0.139 0.861 30 H 0.117 0.883 31 H 0.423 0.577 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.116 0.884 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.342 -7.031 3.798 8.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.116 4.116 3 H 0.099 0.901 4 C 0.299 3.701 5 O -0.486 6.486 6 N -0.189 5.189 7 C -0.475 4.475 8 H 0.083 0.917 9 C -0.144 4.144 10 N -0.509 5.509 11 Si 0.713 3.287 12 H -0.199 1.199 13 H -0.199 1.199 14 H -0.173 1.173 15 C -0.019 4.019 16 C 0.312 3.688 17 O -0.434 6.434 18 O -0.321 6.321 19 C -0.087 4.087 20 C -0.188 4.188 21 C -0.014 4.014 22 O -0.320 6.320 23 C -0.007 4.007 24 C -0.196 4.196 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.156 0.844 30 H 0.134 0.866 31 H 0.284 0.716 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.718 -7.066 4.313 8.713 hybrid contribution -0.164 0.068 -0.709 0.731 sum 2.554 -6.999 3.604 8.276 Atomic orbital electron populations 1.21450 0.92417 1.00918 1.02710 1.21225 0.98449 0.99928 0.92036 0.90116 1.20966 0.77948 0.85057 0.86106 1.90470 1.49524 1.21335 1.87260 1.43370 1.60261 1.11719 1.03580 1.18483 1.17780 0.81722 1.29511 0.91680 1.25796 0.99153 0.94421 0.95026 1.69816 1.37380 1.08782 1.34949 0.86693 0.83080 0.80394 0.78562 1.19922 1.19921 1.17256 1.21200 0.92788 0.97071 0.90865 1.24404 0.90300 0.76721 0.77422 1.90677 1.31501 1.63038 1.58155 1.84483 1.47029 1.58186 1.42362 1.21005 0.94936 0.99571 0.93238 1.22328 1.02322 0.99799 0.94399 1.22739 0.79977 1.00821 0.97870 1.87857 1.21729 1.76348 1.46071 1.22574 0.99320 0.94959 0.83865 1.22439 0.96504 1.00732 0.99948 0.90191 0.93230 0.93621 0.90773 0.84378 0.86557 0.71577 0.90809 0.88759 0.92423 0.86653 0.91807 0.87757 0.91972 0.93696 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 8.82 71.98 0.63 -4.17 16 2 C -0.10 -4.10 1.08 -11.54 -0.01 -4.11 16 3 H 0.08 3.75 3.50 -2.38 -0.01 3.74 16 4 C 0.51 23.77 3.96 87.66 0.35 24.12 16 5 O -0.60 -29.08 13.99 -3.07 -0.04 -29.12 16 6 N -0.47 -21.80 1.44 -639.58 -0.92 -22.72 16 7 C -0.35 -17.72 8.01 84.04 0.67 -17.05 16 8 H 0.07 3.70 8.06 -2.91 -0.02 3.67 16 9 C 0.06 3.20 3.85 84.93 0.33 3.53 16 10 N -0.87 -46.15 13.96 21.66 0.30 -45.85 16 11 Si 0.89 39.98 23.22 68.60 1.59 41.57 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.25 -11.21 4.72 99.48 0.47 -10.74 16 15 C 0.11 4.07 5.97 85.63 0.51 4.59 16 16 C 0.47 17.71 8.37 71.24 0.60 18.30 16 17 O -0.54 -24.86 17.10 21.96 0.38 -24.48 16 18 O -0.51 -13.90 13.42 -51.37 -0.69 -14.59 16 19 C -0.07 -2.50 1.47 -10.67 -0.02 -2.52 16 20 C -0.15 -4.52 4.97 30.68 0.15 -4.37 16 21 C 0.06 1.56 6.84 72.01 0.49 2.06 16 22 O -0.40 -12.02 10.77 -148.98 -1.60 -13.62 16 23 C 0.07 2.04 6.84 72.01 0.49 2.53 16 24 C -0.16 -5.79 3.95 30.69 0.12 -5.67 16 25 H 0.08 2.76 6.32 -2.38 -0.02 2.74 16 26 H 0.05 2.33 7.03 -2.39 -0.02 2.32 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.14 4.64 8.00 -2.39 -0.02 4.62 16 30 H 0.12 4.22 7.49 -2.39 -0.02 4.20 16 31 H 0.42 7.63 9.10 -74.06 -0.67 6.95 16 32 H 0.07 2.71 7.94 -2.39 -0.02 2.69 16 33 H 0.09 2.48 6.54 -2.39 -0.02 2.46 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.04 1.75 6.01 -2.39 -0.01 1.74 16 40 H 0.07 2.87 5.90 -2.38 -0.01 2.86 16 Total: -1.00 -65.81 310.03 3.49 -62.31 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.16 Total: 29.25 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 4.32 Total: 17.23 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -0.62 Total: -68.57 kcal Atomic # 8 Polarization: -79.85 SS G_CDS: -1.96 Total: -81.81 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 1.59 Total: 41.57 kcal Total: -65.81 3.49 -62.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833402437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.986 kcal (2) G-P(sol) polarization free energy of solvation -65.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds