Wall clock time and date at job start Tue Mar 31 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99931 * 2 1 4 4 O 1.20834 * 120.00086 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00172 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.52431 * 59.99684 * 5 3 2 7 7 C 1.53115 * 109.51951 * 299.87147 * 5 3 2 8 8 C 1.53042 * 109.27662 * 297.62145 * 7 5 3 9 9 N 1.46850 * 109.57486 * 300.91891 * 8 7 5 10 10 C 1.46899 * 110.99906 * 185.80818 * 9 8 7 11 11 C 1.53005 * 109.47390 * 71.60427 * 10 9 8 12 12 C 1.50698 * 109.46634 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00903 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99266 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00518 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99698 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47104 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47062 * 120.00086 * 16 14 12 19 19 H 1.48498 * 109.47049 * 239.99975 * 16 14 12 20 20 C 1.46845 * 111.20041 * 61.70835 * 9 8 7 21 21 H 1.08998 * 109.45846 * 58.27276 * 20 9 8 22 22 C 1.50701 * 109.45377 * 178.25114 * 20 9 8 23 23 O 1.20823 * 120.00477 * 28.96571 * 22 20 9 24 24 O 1.34236 * 119.99358 * 208.96591 * 22 20 9 25 25 C 1.53037 * 109.52008 * 298.25994 * 20 9 8 26 26 H 1.08998 * 109.47354 * 300.00379 * 1 2 3 27 27 H 1.09005 * 109.47257 * 60.00242 * 1 2 3 28 28 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.50475 * 57.62541 * 7 5 3 30 30 H 1.09004 * 109.50649 * 177.74561 * 7 5 3 31 31 H 1.08996 * 109.46523 * 180.87213 * 8 7 5 32 32 H 1.08996 * 109.40137 * 60.92517 * 8 7 5 33 33 H 1.09004 * 109.46885 * 191.60172 * 10 9 8 34 34 H 1.09003 * 109.47303 * 311.59692 * 10 9 8 35 35 H 1.08995 * 109.46718 * 299.99596 * 11 10 9 36 36 H 1.08993 * 109.47167 * 59.99768 * 11 10 9 37 37 H 0.96995 * 120.00351 * 179.97438 * 15 14 12 38 38 H 0.96705 * 116.99155 * 179.97438 * 24 22 20 39 39 H 1.09000 * 109.50685 * 299.23544 * 25 20 9 40 40 H 1.09008 * 109.50234 * 179.11838 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9566 0.7811 -0.8905 7 6 4.1154 0.5836 1.2505 8 6 3.6141 1.3194 2.4953 9 7 4.0573 2.7188 2.4515 10 6 3.7118 3.4196 3.6955 11 6 4.6076 2.9172 4.8296 12 6 4.2534 3.6367 6.1055 13 1 3.4678 4.3777 6.1075 14 6 4.9318 3.3480 7.2707 15 7 5.8875 2.4446 7.2687 16 14 4.4934 4.2403 8.8522 17 1 3.3917 5.2008 8.5895 18 1 4.0566 3.2536 9.8724 19 1 5.6830 4.9753 9.3519 20 6 3.5026 3.4151 1.2837 21 1 2.4141 3.3699 1.3172 22 6 3.9462 4.8552 1.3006 23 8 4.9972 5.1577 1.8141 24 8 3.1735 5.8020 0.7451 25 6 4.0018 2.7428 0.0027 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.7721 -0.4506 1.2751 30 1 5.2050 0.6057 1.2299 31 1 4.0158 0.8391 3.3875 32 1 2.5251 1.2841 2.5229 33 1 3.8608 4.4911 3.5622 34 1 2.6682 3.2260 3.9438 35 1 4.4585 1.8458 4.9628 36 1 5.6510 3.1108 4.5813 37 1 6.3650 2.2418 8.0883 38 1 3.4999 6.7116 0.7808 39 1 5.0895 2.7998 -0.0382 40 1 3.5774 3.2502 -0.8637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833710516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:15 Heat of formation + Delta-G solvation = -173.824433 kcal Electronic energy + Delta-G solvation = -23894.003676 eV Core-core repulsion = 20287.935638 eV Total energy + Delta-G solvation = -3606.068038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.21972 -40.04728 -38.16426 -36.54962 -35.76138 -34.34698 -32.65526 -31.32657 -29.45821 -28.00744 -25.82349 -24.42639 -23.68306 -22.42858 -20.95338 -20.11771 -19.60163 -17.85705 -17.47956 -16.99861 -16.54911 -16.28506 -15.93625 -15.44962 -15.12531 -14.61482 -14.29365 -14.00495 -13.84798 -13.43614 -13.26188 -12.79514 -12.76092 -12.50622 -12.23946 -12.02359 -11.95292 -11.34429 -11.29835 -11.20611 -11.02277 -10.92653 -10.85479 -10.59863 -10.45556 -10.36304 -9.97959 -9.71552 -9.37594 -9.06499 -8.28896 -7.82390 -5.95576 -3.97263 2.07195 2.48137 2.56595 3.12500 3.33910 3.41069 3.45490 4.22679 4.44546 4.52789 4.60894 4.69663 4.92642 5.00641 5.03665 5.12566 5.34647 5.37018 5.40554 5.52980 5.54210 5.59037 5.74032 5.75730 5.92044 6.11504 6.14675 6.27701 6.36904 6.45039 6.71873 6.98969 7.34633 7.40789 7.61724 7.77863 7.94367 8.12529 8.21829 8.47456 9.09439 9.65770 11.15937 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017621 B = 0.004852 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.637748 B = 5769.413627 C = 6527.629994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.463 3.537 4 O -0.501 6.501 5 C -0.078 4.078 6 H 0.116 0.884 7 C -0.111 4.111 8 C 0.055 3.945 9 N -0.519 5.519 10 C 0.057 3.943 11 C 0.035 3.965 12 C -0.520 4.520 13 H 0.052 0.948 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.084 3.916 21 H 0.088 0.912 22 C 0.479 3.521 23 O -0.483 6.483 24 O -0.521 6.521 25 C -0.090 4.090 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.025 0.975 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.016 0.984 36 H 0.029 0.971 37 H 0.259 0.741 38 H 0.405 0.595 39 H 0.095 0.905 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.814 -4.490 -18.446 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.306 3.694 4 O -0.389 6.389 5 C -0.097 4.097 6 H 0.134 0.866 7 C -0.149 4.149 8 C -0.073 4.073 9 N -0.245 5.245 10 C -0.069 4.069 11 C -0.003 4.003 12 C -0.559 4.559 13 H 0.071 0.929 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.025 4.025 21 H 0.106 0.894 22 C 0.319 3.681 23 O -0.367 6.367 24 O -0.333 6.333 25 C -0.128 4.128 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.034 0.966 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.264 0.736 39 H 0.114 0.886 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.264 -4.589 -18.242 20.164 hybrid contribution -1.131 1.204 1.081 1.974 sum -8.394 -3.385 -17.160 19.401 Atomic orbital electron populations 1.23264 0.76457 1.03630 1.02570 1.86505 1.23321 1.33488 1.84022 1.23920 0.92202 0.81355 0.71919 1.90654 1.67195 1.36093 1.44916 1.21182 0.87003 0.98790 1.02724 0.86571 1.21719 1.02883 0.98851 0.91432 1.22187 0.97063 0.88694 0.99341 1.61961 1.59142 1.01548 1.01893 1.22502 0.97951 0.97924 0.88513 1.19021 0.95301 0.96029 0.89911 1.21209 1.18771 1.22139 0.93745 0.92931 1.24967 0.95049 0.95260 0.98927 1.69976 1.23104 1.32545 1.27569 0.86555 0.78321 0.79662 0.83567 1.19841 1.21044 1.20958 1.21358 1.00340 0.86840 0.93976 0.89428 1.23240 0.82027 0.88417 0.74386 1.90776 1.23440 1.82532 1.39945 1.84564 1.52989 1.21167 1.74537 1.21452 1.02727 0.92551 0.96082 0.91818 0.91994 0.88133 0.89862 0.88744 0.88090 0.95691 0.91764 0.96116 0.96561 0.95300 0.93088 0.73645 0.88612 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.95 10.43 -39.24 -0.41 -4.36 16 3 C 0.46 5.77 5.86 36.01 0.21 5.98 16 4 O -0.50 -7.50 13.56 -18.76 -0.25 -7.75 16 5 C -0.08 -0.84 3.13 -91.65 -0.29 -1.13 16 6 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 7 C -0.11 -1.31 5.55 -26.65 -0.15 -1.46 16 8 C 0.05 0.88 5.10 -3.83 -0.02 0.86 16 9 N -0.52 -9.74 4.21 -228.07 -0.96 -10.71 16 10 C 0.06 1.30 4.54 -3.82 -0.02 1.28 16 11 C 0.03 0.94 5.02 -27.88 -0.14 0.80 16 12 C -0.52 -15.25 9.11 -34.44 -0.31 -15.56 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16 16 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 C 0.08 1.38 2.07 -68.88 -0.14 1.24 16 21 H 0.09 1.52 5.73 -51.93 -0.30 1.23 16 22 C 0.48 8.22 6.19 36.01 0.22 8.44 16 23 O -0.48 -9.93 16.13 -18.75 -0.30 -10.24 16 24 O -0.52 -7.18 13.42 -39.27 -0.53 -7.71 16 25 C -0.09 -1.13 4.50 -26.65 -0.12 -1.25 16 26 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 27 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.10 1.79 6.49 -51.93 -0.34 1.45 16 32 H 0.02 0.41 7.31 -51.93 -0.38 0.03 16 33 H 0.06 1.53 5.69 -51.93 -0.30 1.23 16 34 H 0.02 0.46 8.06 -51.93 -0.42 0.04 16 35 H 0.02 0.45 6.65 -51.93 -0.35 0.10 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.41 3.74 9.10 45.56 0.41 4.15 16 39 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.08 0.93 8.04 -51.92 -0.42 0.51 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -35.78 327.16 -6.59 -42.36 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.99 Total: 0.65 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 0.22 Total: 2.21 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.22 Total: -37.26 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.49 Total: -30.06 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.78 -6.59 -42.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833710516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.462 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds