Wall clock time and date at job start Tue Mar 31 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99931 * 2 1 4 4 O 1.20834 * 120.00086 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00172 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.52431 * 59.99684 * 5 3 2 7 7 C 1.53115 * 109.51951 * 299.87147 * 5 3 2 8 8 C 1.53042 * 109.27662 * 297.62145 * 7 5 3 9 9 N 1.46850 * 109.57486 * 300.91891 * 8 7 5 10 10 C 1.46899 * 110.99906 * 185.80818 * 9 8 7 11 11 C 1.53005 * 109.47390 * 71.60427 * 10 9 8 12 12 C 1.50698 * 109.46634 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00903 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99266 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00518 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99698 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47104 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47062 * 120.00086 * 16 14 12 19 19 H 1.48498 * 109.47049 * 239.99975 * 16 14 12 20 20 C 1.46845 * 111.20041 * 61.70835 * 9 8 7 21 21 H 1.08998 * 109.45846 * 58.27276 * 20 9 8 22 22 C 1.50701 * 109.45377 * 178.25114 * 20 9 8 23 23 O 1.20823 * 120.00477 * 28.96571 * 22 20 9 24 24 O 1.34236 * 119.99358 * 208.96591 * 22 20 9 25 25 C 1.53037 * 109.52008 * 298.25994 * 20 9 8 26 26 H 1.08998 * 109.47354 * 300.00379 * 1 2 3 27 27 H 1.09005 * 109.47257 * 60.00242 * 1 2 3 28 28 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.50475 * 57.62541 * 7 5 3 30 30 H 1.09004 * 109.50649 * 177.74561 * 7 5 3 31 31 H 1.08996 * 109.46523 * 180.87213 * 8 7 5 32 32 H 1.08996 * 109.40137 * 60.92517 * 8 7 5 33 33 H 1.09004 * 109.46885 * 191.60172 * 10 9 8 34 34 H 1.09003 * 109.47303 * 311.59692 * 10 9 8 35 35 H 1.08995 * 109.46718 * 299.99596 * 11 10 9 36 36 H 1.08993 * 109.47167 * 59.99768 * 11 10 9 37 37 H 0.96995 * 120.00351 * 179.97438 * 15 14 12 38 38 H 0.96705 * 116.99155 * 179.97438 * 24 22 20 39 39 H 1.09000 * 109.50685 * 299.23544 * 25 20 9 40 40 H 1.09008 * 109.50234 * 179.11838 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9566 0.7811 -0.8905 7 6 4.1154 0.5836 1.2505 8 6 3.6141 1.3194 2.4953 9 7 4.0573 2.7188 2.4515 10 6 3.7118 3.4196 3.6955 11 6 4.6076 2.9172 4.8296 12 6 4.2534 3.6367 6.1055 13 1 3.4678 4.3777 6.1075 14 6 4.9318 3.3480 7.2707 15 7 5.8875 2.4446 7.2687 16 14 4.4934 4.2403 8.8522 17 1 3.3917 5.2008 8.5895 18 1 4.0566 3.2536 9.8724 19 1 5.6830 4.9753 9.3519 20 6 3.5026 3.4151 1.2837 21 1 2.4141 3.3699 1.3172 22 6 3.9462 4.8552 1.3006 23 8 4.9972 5.1577 1.8141 24 8 3.1735 5.8020 0.7451 25 6 4.0018 2.7428 0.0027 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.7721 -0.4506 1.2751 30 1 5.2050 0.6057 1.2299 31 1 4.0158 0.8391 3.3875 32 1 2.5251 1.2841 2.5229 33 1 3.8608 4.4911 3.5622 34 1 2.6682 3.2260 3.9438 35 1 4.4585 1.8458 4.9628 36 1 5.6510 3.1108 4.5813 37 1 6.3650 2.2418 8.0883 38 1 3.4999 6.7116 0.7808 39 1 5.0895 2.7998 -0.0382 40 1 3.5774 3.2502 -0.8637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833710516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:13 Heat of formation + Delta-G solvation = -199.945043 kcal Electronic energy + Delta-G solvation = -23895.136350 eV Core-core repulsion = 20287.935638 eV Total energy + Delta-G solvation = -3607.200712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.30784 -41.25306 -39.38126 -37.55588 -37.05406 -35.97722 -34.54691 -32.57509 -31.27424 -28.86937 -27.35362 -25.81919 -25.20507 -23.59329 -22.45413 -21.68345 -20.67772 -19.15359 -18.71579 -18.40778 -17.96407 -17.35224 -17.17573 -16.82293 -16.54012 -16.42329 -15.74721 -15.23270 -14.96527 -14.66030 -14.44186 -14.35237 -14.12993 -13.80305 -13.63107 -13.31253 -13.14373 -12.89661 -12.83519 -12.61662 -12.53199 -12.40550 -12.13518 -11.89231 -11.84224 -11.75300 -11.40652 -11.31163 -11.21763 -11.14258 -10.55759 -9.34047 -8.22104 -6.33455 1.11081 1.16571 1.37056 1.38351 1.51250 1.75334 1.92275 2.37867 2.86159 3.10818 3.52975 3.58752 3.73638 3.96873 4.11184 4.13567 4.24848 4.31805 4.33885 4.36976 4.41274 4.43416 4.70541 4.71676 4.73328 4.84272 4.92878 4.95569 5.02039 5.20099 5.38111 5.43729 5.55800 5.60831 5.71954 5.99016 6.04466 6.24954 6.71426 6.81561 6.99627 7.34938 8.90283 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017621 B = 0.004852 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.637748 B = 5769.413627 C = 6527.629994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.462 3.538 4 O -0.532 6.532 5 C -0.071 4.071 6 H 0.163 0.837 7 C -0.102 4.102 8 C 0.052 3.948 9 N -0.528 5.528 10 C 0.075 3.925 11 C 0.047 3.953 12 C -0.548 4.548 13 H 0.052 0.948 14 C 0.006 3.994 15 N -0.927 5.927 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.272 1.272 19 H -0.276 1.276 20 C 0.082 3.918 21 H 0.081 0.919 22 C 0.483 3.517 23 O -0.525 6.525 24 O -0.511 6.511 25 C -0.087 4.087 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.131 0.869 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.021 0.979 33 H 0.050 0.950 34 H 0.017 0.983 35 H 0.002 0.998 36 H -0.009 1.009 37 H 0.265 0.735 38 H 0.426 0.574 39 H 0.102 0.898 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.582 -5.046 -19.602 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.307 3.693 4 O -0.422 6.422 5 C -0.090 4.090 6 H 0.180 0.820 7 C -0.139 4.139 8 C -0.075 4.075 9 N -0.254 5.254 10 C -0.052 4.052 11 C 0.010 3.990 12 C -0.587 4.587 13 H 0.070 0.930 14 C -0.193 4.193 15 N -0.567 5.567 16 Si 0.790 3.210 17 H -0.190 1.190 18 H -0.198 1.198 19 H -0.202 1.202 20 C -0.027 4.027 21 H 0.098 0.902 22 C 0.325 3.675 23 O -0.413 6.413 24 O -0.324 6.324 25 C -0.124 4.124 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.149 0.851 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.021 0.979 36 H 0.010 0.990 37 H 0.074 0.926 38 H 0.287 0.713 39 H 0.120 0.880 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.055 -5.150 -19.431 21.656 hybrid contribution -0.949 1.373 1.401 2.180 sum -9.005 -3.776 -18.030 20.504 Atomic orbital electron populations 1.23514 0.75182 1.05603 1.02223 1.86496 1.24600 1.32663 1.83531 1.24227 0.92790 0.81280 0.71045 1.90645 1.67954 1.37122 1.46464 1.21251 0.86090 0.97730 1.03913 0.81980 1.21688 1.03252 0.99492 0.89474 1.22256 0.96823 0.87457 1.00987 1.61855 1.59839 1.02687 1.01049 1.22058 0.96487 0.97276 0.89394 1.18785 0.93897 0.95111 0.91214 1.21588 1.19254 1.22700 0.95142 0.92994 1.25913 0.94664 0.95937 1.02747 1.70097 1.23932 1.33724 1.28922 0.85399 0.78339 0.78576 0.78711 1.19045 1.19757 1.20201 1.21509 0.99819 0.86822 0.94554 0.90180 1.23438 0.81430 0.89209 0.73436 1.90764 1.25319 1.83245 1.41985 1.84516 1.52105 1.22308 1.73479 1.21511 1.03129 0.93613 0.94164 0.93051 0.91510 0.85055 0.87372 0.88058 0.90566 0.96069 0.93170 0.96458 0.97948 0.99027 0.92592 0.71254 0.87972 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.36 -7.00 10.43 -51.35 -0.54 -7.54 16 3 C 0.46 10.49 5.86 71.24 0.42 10.90 16 4 O -0.53 -15.22 13.56 21.94 0.30 -14.92 16 5 C -0.07 -1.33 3.13 -11.46 -0.04 -1.36 16 6 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 7 C -0.10 -2.18 5.55 30.65 0.17 -2.01 16 8 C 0.05 1.69 5.10 86.33 0.44 2.13 16 9 N -0.53 -20.24 4.21 -875.49 -3.69 -23.93 16 10 C 0.08 3.55 4.54 86.30 0.39 3.95 16 11 C 0.05 2.69 5.02 29.85 0.15 2.84 16 12 C -0.55 -33.13 9.11 25.60 0.23 -32.90 16 13 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 14 C 0.01 0.34 5.46 84.66 0.46 0.81 16 15 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 16 Si 0.97 45.82 29.54 68.60 2.03 47.85 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 C 0.08 2.66 2.07 44.19 0.09 2.75 16 21 H 0.08 2.77 5.73 -2.39 -0.01 2.76 16 22 C 0.48 16.54 6.19 71.24 0.44 16.98 16 23 O -0.53 -22.07 16.13 21.97 0.35 -21.72 16 24 O -0.51 -13.58 13.42 -51.48 -0.69 -14.28 16 25 C -0.09 -1.99 4.50 30.65 0.14 -1.85 16 26 H 0.05 0.91 8.13 -2.39 -0.02 0.89 16 27 H 0.07 0.96 8.13 -2.38 -0.02 0.94 16 28 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 1.84 8.07 -2.39 -0.02 1.82 16 30 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.08 2.82 6.49 -2.39 -0.02 2.81 16 32 H 0.02 0.70 7.31 -2.39 -0.02 0.68 16 33 H 0.05 2.49 5.69 -2.38 -0.01 2.47 16 34 H 0.02 0.81 8.06 -2.39 -0.02 0.79 16 35 H 0.00 0.13 6.65 -2.39 -0.02 0.12 16 36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.43 7.35 9.10 -74.05 -0.67 6.67 16 39 H 0.10 2.25 8.14 -2.39 -0.02 2.24 16 40 H 0.10 1.97 8.04 -2.38 -0.02 1.95 16 Total: -1.00 -79.88 327.16 2.53 -77.35 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.38 Total: 10.84 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 4.10 Total: 3.86 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -3.40 Total: -81.45 kcal Atomic # 8 Polarization: -57.88 SS G_CDS: -0.57 Total: -58.45 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -79.88 2.53 -77.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833710516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.597 kcal (2) G-P(sol) polarization free energy of solvation -79.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds