Wall clock time and date at job start Tue Mar 31 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00008 * 2 1 4 4 O 1.20831 * 119.99790 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00048 * 179.97438 * 3 2 1 6 6 H 1.09011 * 109.51910 * 299.86848 * 5 3 2 7 7 C 1.53113 * 109.52442 * 59.99691 * 5 3 2 8 8 C 1.53036 * 109.31124 * 177.54329 * 7 5 3 9 9 N 1.46855 * 109.51995 * 300.87883 * 8 7 5 10 10 C 1.46901 * 110.99213 * 185.80133 * 9 8 7 11 11 C 1.52995 * 109.47295 * 51.74251 * 10 9 8 12 12 C 1.50708 * 109.47050 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99888 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00084 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99970 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46934 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47325 * 120.00390 * 16 14 12 19 19 H 1.48500 * 109.47034 * 240.00100 * 16 14 12 20 20 C 1.46848 * 111.23006 * 61.68571 * 9 8 7 21 21 H 1.08994 * 109.45641 * 58.28477 * 20 9 8 22 22 C 1.50697 * 109.45875 * 178.26232 * 20 9 8 23 23 O 1.20824 * 120.00237 * 28.90648 * 22 20 9 24 24 O 1.34230 * 119.99863 * 208.90770 * 22 20 9 25 25 C 1.53035 * 109.52010 * 298.27320 * 20 9 8 26 26 H 1.09008 * 109.46757 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47260 * 300.00427 * 1 2 3 28 28 H 1.08999 * 109.46837 * 60.01054 * 1 2 3 29 29 H 1.09000 * 109.49999 * 297.49722 * 7 5 3 30 30 H 1.08994 * 109.50586 * 57.57574 * 7 5 3 31 31 H 1.09004 * 109.46440 * 60.85328 * 8 7 5 32 32 H 1.09003 * 109.46364 * 180.82160 * 8 7 5 33 33 H 1.09005 * 109.46653 * 171.74041 * 10 9 8 34 34 H 1.08997 * 109.47243 * 291.73595 * 10 9 8 35 35 H 1.08993 * 109.47246 * 299.99945 * 11 10 9 36 36 H 1.09008 * 109.47231 * 59.99864 * 11 10 9 37 37 H 0.96998 * 120.00362 * 180.02562 * 15 14 12 38 38 H 0.96698 * 117.00053 * 180.02562 * 24 22 20 39 39 H 1.08994 * 109.50731 * 299.24435 * 25 20 9 40 40 H 1.09005 * 109.53450 * 179.14048 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9565 0.7831 0.8918 7 6 4.1156 0.5808 -1.2488 8 6 5.6397 0.7170 -1.2746 9 7 6.0052 2.1393 -1.2814 10 6 7.4552 2.3093 -1.4446 11 6 7.9288 1.5094 -2.6598 12 6 9.4163 1.6844 -2.8276 13 1 9.9685 2.3037 -2.1363 14 6 10.0722 1.0529 -3.8629 15 7 9.3997 0.2983 -4.7044 16 14 11.9160 1.2691 -4.0705 17 1 12.4331 2.1609 -3.0017 18 1 12.5831 -0.0543 -3.9777 19 1 12.1972 1.8731 -5.3976 20 6 5.5292 2.8164 -0.0683 21 1 5.9515 2.3278 0.8096 22 6 5.9616 4.2597 -0.0966 23 8 6.1137 4.8243 -1.1540 24 8 6.1778 4.9182 1.0529 25 6 4.0018 2.7428 -0.0076 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 3.8450 -0.4749 -1.2272 30 1 3.6934 1.0465 -2.1392 31 1 6.0621 0.2382 -0.3912 32 1 6.0321 0.2362 -2.1707 33 1 7.6827 3.3649 -1.5932 34 1 7.9660 1.9498 -0.5514 35 1 7.7012 0.4539 -2.5112 36 1 7.4180 1.8690 -3.5531 37 1 9.8612 -0.1463 -5.4326 38 1 6.4535 5.8425 0.9843 39 1 3.5784 3.2431 -0.8785 40 1 3.6492 3.2320 0.9004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833710518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:23 Heat of formation + Delta-G solvation = -177.314838 kcal Electronic energy + Delta-G solvation = -23297.686751 eV Core-core repulsion = 19691.467358 eV Total energy + Delta-G solvation = -3606.219393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99157 -40.24826 -38.32227 -36.66564 -35.89340 -34.42424 -32.69063 -31.42690 -29.47819 -28.04812 -25.97074 -24.51845 -23.73143 -22.21649 -20.88338 -20.12947 -19.55863 -18.09369 -17.66685 -17.13495 -16.57844 -16.38392 -15.92710 -15.50648 -15.08023 -14.68645 -14.40344 -14.19013 -13.72001 -13.59153 -13.28188 -13.06368 -12.79017 -12.60060 -12.34252 -12.02607 -11.51389 -11.46879 -11.33572 -11.22952 -11.01937 -10.98924 -10.88325 -10.76743 -10.54685 -10.36140 -10.09730 -9.84486 -9.38589 -9.09714 -8.34842 -7.91142 -6.01177 -4.03096 2.04616 2.29356 2.56451 3.03708 3.31142 3.38733 3.42771 4.13547 4.41567 4.48809 4.66320 4.68347 4.88030 4.95779 4.98902 5.13137 5.15894 5.29036 5.35251 5.44277 5.46773 5.57171 5.73992 5.76411 6.02991 6.14244 6.17341 6.23335 6.34566 6.44373 6.59820 6.90960 7.28284 7.38981 7.57887 7.68424 7.84259 8.01924 8.09793 8.40749 9.02941 9.60565 11.10246 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019294 B = 0.004210 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.874681 B = 6649.029260 C = 7844.969037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.470 3.530 4 O -0.507 6.507 5 C -0.077 4.077 6 H 0.111 0.889 7 C -0.110 4.110 8 C 0.056 3.944 9 N -0.521 5.521 10 C 0.052 3.948 11 C 0.026 3.974 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.098 3.902 21 H 0.071 0.929 22 C 0.481 3.519 23 O -0.482 6.482 24 O -0.523 6.523 25 C -0.090 4.090 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.028 0.972 37 H 0.260 0.740 38 H 0.408 0.592 39 H 0.090 0.910 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.898 0.124 12.855 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.394 6.394 5 C -0.097 4.097 6 H 0.129 0.871 7 C -0.148 4.148 8 C -0.072 4.072 9 N -0.248 5.248 10 C -0.074 4.074 11 C -0.011 4.011 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.012 4.012 21 H 0.089 0.911 22 C 0.320 3.680 23 O -0.366 6.366 24 O -0.335 6.335 25 C -0.128 4.128 26 H 0.119 0.881 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.267 0.733 39 H 0.109 0.891 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.416 0.288 12.022 19.552 hybrid contribution 1.409 0.431 0.479 1.549 sum -14.007 0.718 12.501 18.788 Atomic orbital electron populations 1.23266 0.76473 1.03660 1.02506 1.86522 1.23297 1.33442 1.84027 1.23756 0.91888 0.81257 0.71840 1.90669 1.67190 1.36384 1.45178 1.21127 0.86908 0.98761 1.02856 0.87127 1.21703 0.96466 1.00766 0.95849 1.22240 0.93562 0.88075 1.03283 1.61948 1.17538 1.12422 1.32923 1.22554 0.82405 1.02384 1.00014 1.19181 0.95622 0.94452 0.91852 1.21184 0.93068 1.29376 1.12293 0.92786 1.24973 0.98284 0.95224 0.95756 1.69968 1.35615 1.31433 1.16179 0.86532 0.85579 0.77817 0.78051 1.19801 1.21024 1.20962 1.21090 0.96237 0.88518 0.95320 0.91130 1.23156 0.73912 0.89693 0.81193 1.90758 1.45641 1.68440 1.31789 1.84514 1.80971 1.31124 1.36862 1.21422 0.92077 0.94627 1.04683 0.88096 0.92023 0.91843 0.89791 0.90146 0.94475 0.87289 0.90855 0.96099 0.96096 0.95366 0.93021 0.73335 0.89137 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.81 10.49 -39.25 -0.41 -4.22 16 3 C 0.47 5.69 7.26 36.00 0.26 5.95 16 4 O -0.51 -7.39 15.73 -18.75 -0.29 -7.68 16 5 C -0.08 -0.87 2.70 -91.65 -0.25 -1.12 16 6 H 0.11 1.02 8.14 -51.92 -0.42 0.59 16 7 C -0.11 -1.35 5.30 -26.65 -0.14 -1.49 16 8 C 0.06 0.85 5.03 -3.83 -0.02 0.83 16 9 N -0.52 -9.23 4.36 -228.08 -0.99 -10.22 16 10 C 0.05 1.12 4.52 -3.83 -0.02 1.10 16 11 C 0.03 0.67 4.47 -27.88 -0.12 0.54 16 12 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 16 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 C 0.10 1.44 2.34 -68.88 -0.16 1.28 16 21 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 22 C 0.48 7.51 6.50 36.00 0.23 7.74 16 23 O -0.48 -9.33 15.90 -18.75 -0.30 -9.63 16 24 O -0.52 -6.24 13.42 -39.26 -0.53 -6.77 16 25 C -0.09 -1.15 3.94 -26.65 -0.11 -1.26 16 26 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.11 1.92 5.84 -51.93 -0.30 1.62 16 33 H 0.07 1.68 6.11 -51.93 -0.32 1.36 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.54 6.19 -51.93 -0.32 0.22 16 36 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.41 3.16 9.10 45.56 0.41 3.57 16 39 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 332.11 15.07 5.00 5.00 Total: -1.00 -34.42 332.11 -6.61 -41.03 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.14 Total: 0.19 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 0.33 Total: 1.45 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.26 Total: -36.03 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -1.53 Total: -28.30 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.42 -6.61 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833710518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.287 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds