Wall clock time and date at job start Tue Mar 31 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00008 * 2 1 4 4 O 1.20831 * 119.99790 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00048 * 179.97438 * 3 2 1 6 6 H 1.09011 * 109.51910 * 299.86848 * 5 3 2 7 7 C 1.53113 * 109.52442 * 59.99691 * 5 3 2 8 8 C 1.53036 * 109.31124 * 177.54329 * 7 5 3 9 9 N 1.46855 * 109.51995 * 300.87883 * 8 7 5 10 10 C 1.46901 * 110.99213 * 185.80133 * 9 8 7 11 11 C 1.52995 * 109.47295 * 51.74251 * 10 9 8 12 12 C 1.50708 * 109.47050 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99888 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00084 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99970 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46934 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47325 * 120.00390 * 16 14 12 19 19 H 1.48500 * 109.47034 * 240.00100 * 16 14 12 20 20 C 1.46848 * 111.23006 * 61.68571 * 9 8 7 21 21 H 1.08994 * 109.45641 * 58.28477 * 20 9 8 22 22 C 1.50697 * 109.45875 * 178.26232 * 20 9 8 23 23 O 1.20824 * 120.00237 * 28.90648 * 22 20 9 24 24 O 1.34230 * 119.99863 * 208.90770 * 22 20 9 25 25 C 1.53035 * 109.52010 * 298.27320 * 20 9 8 26 26 H 1.09008 * 109.46757 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47260 * 300.00427 * 1 2 3 28 28 H 1.08999 * 109.46837 * 60.01054 * 1 2 3 29 29 H 1.09000 * 109.49999 * 297.49722 * 7 5 3 30 30 H 1.08994 * 109.50586 * 57.57574 * 7 5 3 31 31 H 1.09004 * 109.46440 * 60.85328 * 8 7 5 32 32 H 1.09003 * 109.46364 * 180.82160 * 8 7 5 33 33 H 1.09005 * 109.46653 * 171.74041 * 10 9 8 34 34 H 1.08997 * 109.47243 * 291.73595 * 10 9 8 35 35 H 1.08993 * 109.47246 * 299.99945 * 11 10 9 36 36 H 1.09008 * 109.47231 * 59.99864 * 11 10 9 37 37 H 0.96998 * 120.00362 * 180.02562 * 15 14 12 38 38 H 0.96698 * 117.00053 * 180.02562 * 24 22 20 39 39 H 1.08994 * 109.50731 * 299.24435 * 25 20 9 40 40 H 1.09005 * 109.53450 * 179.14048 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9565 0.7831 0.8918 7 6 4.1156 0.5808 -1.2488 8 6 5.6397 0.7170 -1.2746 9 7 6.0052 2.1393 -1.2814 10 6 7.4552 2.3093 -1.4446 11 6 7.9288 1.5094 -2.6598 12 6 9.4163 1.6844 -2.8276 13 1 9.9685 2.3037 -2.1363 14 6 10.0722 1.0529 -3.8629 15 7 9.3997 0.2983 -4.7044 16 14 11.9160 1.2691 -4.0705 17 1 12.4331 2.1609 -3.0017 18 1 12.5831 -0.0543 -3.9777 19 1 12.1972 1.8731 -5.3976 20 6 5.5292 2.8164 -0.0683 21 1 5.9515 2.3278 0.8096 22 6 5.9616 4.2597 -0.0966 23 8 6.1137 4.8243 -1.1540 24 8 6.1778 4.9182 1.0529 25 6 4.0018 2.7428 -0.0076 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 3.8450 -0.4749 -1.2272 30 1 3.6934 1.0465 -2.1392 31 1 6.0621 0.2382 -0.3912 32 1 6.0321 0.2362 -2.1707 33 1 7.6827 3.3649 -1.5932 34 1 7.9660 1.9498 -0.5514 35 1 7.7012 0.4539 -2.5112 36 1 7.4180 1.8690 -3.5531 37 1 9.8612 -0.1463 -5.4326 38 1 6.4535 5.8425 0.9843 39 1 3.5784 3.2431 -0.8785 40 1 3.6492 3.2320 0.9004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833710518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:21 Heat of formation + Delta-G solvation = -202.008903 kcal Electronic energy + Delta-G solvation = -23298.757566 eV Core-core repulsion = 19691.467358 eV Total energy + Delta-G solvation = -3607.290208 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.04589 -41.34130 -39.51023 -37.59922 -37.05988 -36.00305 -34.51236 -32.65011 -31.16305 -28.92311 -27.36586 -25.76674 -25.36989 -23.35707 -22.23674 -21.44261 -20.73724 -19.21600 -18.73332 -18.60014 -17.93995 -17.45892 -16.98899 -16.80394 -16.48234 -16.35651 -15.74187 -15.52630 -14.84426 -14.64876 -14.47300 -14.37799 -14.15160 -13.91194 -13.57212 -13.19638 -13.06807 -12.92055 -12.66327 -12.56464 -12.43494 -12.42479 -12.10559 -11.94041 -11.79235 -11.72120 -11.61011 -11.31292 -11.19072 -11.07014 -10.52135 -9.28261 -8.19896 -6.30329 1.10845 1.13506 1.39758 1.41101 1.53605 1.67216 1.99183 2.40225 2.86889 3.13751 3.46047 3.64204 3.74772 3.91045 4.06887 4.19768 4.31209 4.34004 4.35418 4.36819 4.44225 4.49373 4.59941 4.74264 4.75106 4.84962 4.97613 5.01262 5.07323 5.21752 5.36978 5.42961 5.58930 5.64111 5.78051 6.02466 6.10248 6.29114 6.68853 6.85072 7.00838 7.38185 8.92119 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019294 B = 0.004210 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.874681 B = 6649.029260 C = 7844.969037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.475 3.525 4 O -0.536 6.536 5 C -0.071 4.071 6 H 0.145 0.855 7 C -0.100 4.100 8 C 0.057 3.943 9 N -0.541 5.541 10 C 0.073 3.927 11 C 0.035 3.965 12 C -0.545 4.545 13 H 0.055 0.945 14 C 0.005 3.995 15 N -0.928 5.928 16 Si 0.964 3.036 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.281 1.281 20 C 0.097 3.903 21 H 0.099 0.901 22 C 0.484 3.516 23 O -0.530 6.530 24 O -0.507 6.507 25 C -0.082 4.082 26 H 0.132 0.868 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.030 0.970 35 H 0.014 0.986 36 H -0.012 1.012 37 H 0.264 0.736 38 H 0.428 0.572 39 H 0.064 0.936 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.919 -0.581 15.009 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.319 3.681 4 O -0.426 6.426 5 C -0.090 4.090 6 H 0.162 0.838 7 C -0.137 4.137 8 C -0.070 4.070 9 N -0.268 5.268 10 C -0.054 4.054 11 C -0.002 4.002 12 C -0.583 4.583 13 H 0.073 0.927 14 C -0.193 4.193 15 N -0.568 5.568 16 Si 0.788 3.212 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.206 1.206 20 C -0.012 4.012 21 H 0.117 0.883 22 C 0.325 3.675 23 O -0.418 6.418 24 O -0.321 6.321 25 C -0.120 4.120 26 H 0.150 0.850 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.006 0.994 37 H 0.073 0.927 38 H 0.289 0.711 39 H 0.083 0.917 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.451 -0.420 14.215 21.000 hybrid contribution 1.331 0.656 -0.162 1.493 sum -14.120 0.235 14.053 19.923 Atomic orbital electron populations 1.23560 0.74834 1.05729 1.02468 1.86507 1.24901 1.32442 1.83484 1.23781 0.92015 0.81256 0.71034 1.90665 1.67834 1.37402 1.46684 1.21097 0.86669 0.97726 1.03485 0.83771 1.21590 0.93995 1.02272 0.95883 1.22201 0.95635 0.86549 1.02613 1.61764 1.15035 1.14272 1.35693 1.22083 0.85045 1.00119 0.98182 1.18986 0.94364 0.94566 0.92261 1.21601 0.94512 1.29509 1.12693 0.92701 1.25890 1.03416 0.94733 0.95307 1.70091 1.37724 1.32201 1.16737 0.85422 0.79418 0.78241 0.78096 1.18879 1.19894 1.20636 1.21222 0.97435 0.87892 0.94658 0.88313 1.23397 0.72777 0.90139 0.81162 1.90749 1.47927 1.69513 1.33602 1.84461 1.80194 1.32634 1.34792 1.21350 0.90396 0.95829 1.04469 0.85023 0.91656 0.92367 0.87380 0.91962 0.92427 0.90520 0.92846 0.95139 0.96759 0.99365 0.92708 0.71063 0.91676 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.75 10.49 -51.39 -0.54 -7.29 16 3 C 0.47 10.57 7.26 71.24 0.52 11.08 16 4 O -0.54 -14.98 15.73 21.95 0.35 -14.64 16 5 C -0.07 -1.43 2.70 -11.46 -0.03 -1.46 16 6 H 0.14 2.01 8.14 -2.38 -0.02 1.99 16 7 C -0.10 -2.32 5.30 30.64 0.16 -2.16 16 8 C 0.06 1.71 5.03 86.32 0.43 2.14 16 9 N -0.54 -19.19 4.36 -875.50 -3.82 -23.01 16 10 C 0.07 3.15 4.52 86.30 0.39 3.54 16 11 C 0.04 1.89 4.47 29.85 0.13 2.02 16 12 C -0.54 -31.45 9.11 25.60 0.23 -31.21 16 13 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 14 C 0.00 0.28 5.46 84.65 0.46 0.74 16 15 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 16 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 17 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 C 0.10 2.70 2.34 44.19 0.10 2.80 16 21 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 22 C 0.48 14.70 6.50 71.24 0.46 15.17 16 23 O -0.53 -20.92 15.90 21.97 0.35 -20.57 16 24 O -0.51 -11.03 13.42 -51.41 -0.69 -11.72 16 25 C -0.08 -1.97 3.94 30.65 0.12 -1.85 16 26 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 28 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 29 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 2.81 5.84 -2.39 -0.01 2.80 16 33 H 0.05 2.52 6.11 -2.38 -0.01 2.50 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.01 0.77 6.19 -2.39 -0.01 0.75 16 36 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 37 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.43 5.77 9.10 -74.06 -0.67 5.10 16 39 H 0.06 1.91 8.05 -2.39 -0.02 1.89 16 40 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -76.58 332.11 2.52 -74.06 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.38 Total: 10.17 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 4.19 Total: 2.38 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -3.53 Total: -79.00 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -0.53 Total: -54.22 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -76.58 2.52 -74.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833710518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.947 kcal (2) G-P(sol) polarization free energy of solvation -76.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds