Wall clock time and date at job start Tue Mar 31 2020 06:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34235 * 116.99901 * 2 1 4 4 O 1.20821 * 119.99805 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99774 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.52806 * 60.12674 * 5 3 2 7 7 C 1.53124 * 109.51800 * 299.99641 * 5 3 2 8 8 C 1.53046 * 109.27482 * 182.44265 * 7 5 3 9 9 N 1.46852 * 109.52108 * 59.18180 * 8 7 5 10 10 C 1.46894 * 110.99893 * 174.16072 * 9 8 7 11 11 C 1.52998 * 109.47278 * 65.37238 * 10 9 8 12 12 C 1.50702 * 109.47438 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99622 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00331 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00187 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 120.00050 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.46765 * 89.99748 * 16 14 12 18 18 H 1.48496 * 109.47019 * 209.99978 * 16 14 12 19 19 H 1.48497 * 109.46682 * 329.99944 * 16 14 12 20 20 C 1.46852 * 111.19793 * 298.25805 * 9 8 7 21 21 H 1.09000 * 109.45854 * 301.72711 * 20 9 8 22 22 C 1.50701 * 109.46146 * 181.75999 * 20 9 8 23 23 O 1.20827 * 119.99921 * 331.14841 * 22 20 9 24 24 O 1.34223 * 120.00170 * 151.14088 * 22 20 9 25 25 C 1.53034 * 109.52460 * 61.74123 * 20 9 8 26 26 H 1.09000 * 109.47557 * 59.99904 * 1 2 3 27 27 H 1.09002 * 109.47583 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47462 * 299.99526 * 1 2 3 29 29 H 1.08995 * 109.50521 * 62.50747 * 7 5 3 30 30 H 1.08994 * 109.50776 * 302.38030 * 7 5 3 31 31 H 1.08995 * 109.46122 * 299.16870 * 8 7 5 32 32 H 1.08998 * 109.45013 * 179.19029 * 8 7 5 33 33 H 1.09003 * 109.47014 * 305.37718 * 10 9 8 34 34 H 1.08998 * 109.47510 * 185.37797 * 10 9 8 35 35 H 1.09001 * 109.47394 * 299.99918 * 11 10 9 36 36 H 1.09001 * 109.47210 * 60.00384 * 11 10 9 37 37 H 0.97002 * 120.00007 * 179.97438 * 15 14 12 38 38 H 0.96692 * 117.00348 * 179.97438 * 24 22 20 39 39 H 1.09003 * 109.50322 * 180.87695 * 25 20 9 40 40 H 1.09000 * 109.53405 * 60.78134 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9565 0.7832 -0.8916 7 6 4.1154 0.5808 1.2490 8 6 5.6396 0.7171 1.2739 9 7 6.0050 2.1394 1.2816 10 6 7.4549 2.3095 1.4449 11 6 8.1762 1.7400 0.2217 12 6 9.6638 1.9139 0.3895 13 1 10.0555 2.3833 1.2799 14 6 10.5245 1.4739 -0.5934 15 7 11.8226 1.6261 -0.4472 16 14 9.8470 0.6627 -2.1337 17 1 9.5924 1.6981 -3.1672 18 1 10.8330 -0.3203 -2.6501 19 1 8.5770 -0.0345 -1.8080 20 6 5.5290 2.8165 0.0685 21 1 5.9515 2.3280 -0.8095 22 6 5.9615 4.2599 0.0966 23 8 6.1145 4.8242 1.1540 24 8 6.1768 4.9185 -1.0529 25 6 4.0017 2.7428 0.0076 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.8448 -0.4748 1.2276 30 1 3.6938 1.0472 2.1393 31 1 6.0615 0.2385 0.3902 32 1 6.0323 0.2364 2.1699 33 1 7.7842 1.7810 2.3396 34 1 7.6876 3.3698 1.5430 35 1 7.9436 0.6797 0.1237 36 1 7.8470 2.2685 -0.6729 37 1 12.4283 1.3162 -1.1386 38 1 6.4525 5.8427 -0.9843 39 1 3.6497 3.2319 -0.9008 40 1 3.5776 3.2434 0.8780 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833710519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:27 Heat of formation + Delta-G solvation = -175.864136 kcal Electronic energy + Delta-G solvation = -23725.587211 eV Core-core repulsion = 20119.430725 eV Total energy + Delta-G solvation = -3606.156486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.04979 -40.25496 -38.37866 -36.72300 -35.79188 -34.57296 -32.62507 -31.40054 -29.90838 -28.13125 -26.24341 -24.51327 -23.51526 -22.12861 -21.31122 -20.52252 -19.09443 -18.04146 -17.66719 -17.08619 -16.89604 -16.55474 -15.86265 -15.57824 -15.15310 -14.78940 -14.47229 -14.01012 -13.81475 -13.49105 -13.31388 -13.06332 -12.89591 -12.67318 -12.46552 -12.22691 -11.89150 -11.49554 -11.36728 -11.22168 -11.19290 -11.03491 -10.92763 -10.90489 -10.47838 -10.37384 -10.09491 -9.98032 -9.73299 -9.30528 -8.60843 -7.89292 -6.11085 -4.10221 2.00216 2.33948 2.56740 3.13528 3.23788 3.31302 3.31951 4.12173 4.37363 4.39416 4.57645 4.64999 4.83749 4.91304 4.97908 5.08004 5.19144 5.24495 5.27391 5.37948 5.50553 5.54818 5.62899 5.72545 5.94792 5.98431 6.09534 6.11507 6.17013 6.32890 6.58159 6.74306 7.00020 7.05457 7.26781 7.40596 7.53409 7.74079 8.18945 8.45662 8.93671 9.50434 11.02166 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018930 B = 0.004961 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.752588 B = 5643.117527 C = 6264.819249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.506 6.506 5 C -0.079 4.079 6 H 0.113 0.887 7 C -0.109 4.109 8 C 0.056 3.944 9 N -0.524 5.524 10 C 0.054 3.946 11 C -0.048 4.048 12 C -0.519 4.519 13 H 0.073 0.927 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.095 3.905 21 H 0.082 0.918 22 C 0.491 3.509 23 O -0.493 6.493 24 O -0.517 6.517 25 C -0.091 4.091 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.020 0.980 36 H 0.010 0.990 37 H 0.264 0.736 38 H 0.409 0.591 39 H 0.083 0.917 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.600 -2.769 -1.033 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.313 3.687 4 O -0.393 6.393 5 C -0.098 4.098 6 H 0.131 0.869 7 C -0.146 4.146 8 C -0.072 4.072 9 N -0.249 5.249 10 C -0.072 4.072 11 C -0.086 4.086 12 C -0.557 4.557 13 H 0.092 0.908 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.705 3.295 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.015 4.015 21 H 0.099 0.901 22 C 0.331 3.669 23 O -0.379 6.379 24 O -0.328 6.328 25 C -0.129 4.129 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.038 0.962 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.268 0.732 39 H 0.102 0.898 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.974 -2.531 -0.433 21.131 hybrid contribution 0.287 -0.116 -1.600 1.630 sum -20.687 -2.647 -2.033 20.954 Atomic orbital electron populations 1.23264 0.76461 1.03656 1.02532 1.86521 1.23309 1.33462 1.84060 1.23741 0.91848 0.81261 0.71884 1.90669 1.67155 1.36368 1.45089 1.21128 0.86924 0.98939 1.02834 0.86940 1.21677 0.96240 1.00763 0.95967 1.22112 0.93800 0.88509 1.02743 1.62205 1.17004 1.11947 1.33760 1.22404 0.82340 1.02616 0.99825 1.20202 0.97864 0.96227 0.94336 1.20971 0.88617 1.39804 1.06326 0.90840 1.25023 0.94718 0.95363 0.98159 1.69911 1.02066 1.47241 1.34635 0.86810 0.79089 0.79777 0.83799 1.20184 1.21243 1.19208 1.21074 0.95711 0.88847 0.95889 0.90050 1.22960 0.73339 0.89409 0.81190 1.90695 1.46605 1.68669 1.31924 1.84512 1.80571 1.31179 1.36583 1.21440 0.92251 0.94439 1.04738 0.91956 0.88102 0.91886 0.89812 0.90298 0.93337 0.89135 0.90408 0.90249 0.96218 0.97222 0.92646 0.73214 0.89840 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.68 10.49 -39.27 -0.41 -4.09 16 3 C 0.47 5.57 7.26 36.01 0.26 5.83 16 4 O -0.51 -7.23 15.73 -18.75 -0.29 -7.52 16 5 C -0.08 -0.89 2.70 -91.65 -0.25 -1.14 16 6 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 7 C -0.11 -1.19 5.31 -26.64 -0.14 -1.33 16 8 C 0.06 0.76 5.03 -3.83 -0.02 0.75 16 9 N -0.52 -8.68 4.46 -228.07 -1.02 -9.70 16 10 C 0.05 1.09 4.80 -3.83 -0.02 1.08 16 11 C -0.05 -1.09 3.35 -27.88 -0.09 -1.19 16 12 C -0.52 -14.53 9.66 -34.44 -0.33 -14.87 16 13 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 16 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 20 C 0.09 1.48 1.75 -68.87 -0.12 1.36 16 21 H 0.08 1.30 6.61 -51.93 -0.34 0.96 16 22 C 0.49 8.30 6.39 36.01 0.23 8.53 16 23 O -0.49 -9.59 15.91 -18.75 -0.30 -9.89 16 24 O -0.52 -7.41 13.42 -39.24 -0.53 -7.94 16 25 C -0.09 -1.18 3.94 -26.65 -0.11 -1.29 16 26 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.70 6.74 -51.93 -0.35 0.35 16 32 H 0.09 1.18 8.07 -51.93 -0.42 0.76 16 33 H 0.08 1.55 8.07 -51.93 -0.42 1.13 16 34 H 0.08 1.75 6.01 -51.93 -0.31 1.44 16 35 H 0.02 0.44 5.72 -51.93 -0.30 0.15 16 36 H 0.01 0.22 5.88 -51.93 -0.31 -0.08 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.41 4.07 9.10 45.56 0.41 4.49 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.09 1.27 8.04 -51.93 -0.42 0.85 16 LS Contribution 325.94 15.07 4.91 4.91 Total: -1.00 -34.42 325.94 -6.14 -40.56 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.99 Total: 2.84 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 0.38 Total: 0.94 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.24 Total: -36.39 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -1.53 Total: -29.44 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.42 -6.14 -40.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833710519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.300 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds