Wall clock time and date at job start Tue Mar 31 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34235 * 116.99901 * 2 1 4 4 O 1.20821 * 119.99805 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99774 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.52806 * 60.12674 * 5 3 2 7 7 C 1.53124 * 109.51800 * 299.99641 * 5 3 2 8 8 C 1.53046 * 109.27482 * 182.44265 * 7 5 3 9 9 N 1.46852 * 109.52108 * 59.18180 * 8 7 5 10 10 C 1.46894 * 110.99893 * 174.16072 * 9 8 7 11 11 C 1.52998 * 109.47278 * 65.37238 * 10 9 8 12 12 C 1.50702 * 109.47438 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99622 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00331 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00187 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 120.00050 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.46765 * 89.99748 * 16 14 12 18 18 H 1.48496 * 109.47019 * 209.99978 * 16 14 12 19 19 H 1.48497 * 109.46682 * 329.99944 * 16 14 12 20 20 C 1.46852 * 111.19793 * 298.25805 * 9 8 7 21 21 H 1.09000 * 109.45854 * 301.72711 * 20 9 8 22 22 C 1.50701 * 109.46146 * 181.75999 * 20 9 8 23 23 O 1.20827 * 119.99921 * 331.14841 * 22 20 9 24 24 O 1.34223 * 120.00170 * 151.14088 * 22 20 9 25 25 C 1.53034 * 109.52460 * 61.74123 * 20 9 8 26 26 H 1.09000 * 109.47557 * 59.99904 * 1 2 3 27 27 H 1.09002 * 109.47583 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47462 * 299.99526 * 1 2 3 29 29 H 1.08995 * 109.50521 * 62.50747 * 7 5 3 30 30 H 1.08994 * 109.50776 * 302.38030 * 7 5 3 31 31 H 1.08995 * 109.46122 * 299.16870 * 8 7 5 32 32 H 1.08998 * 109.45013 * 179.19029 * 8 7 5 33 33 H 1.09003 * 109.47014 * 305.37718 * 10 9 8 34 34 H 1.08998 * 109.47510 * 185.37797 * 10 9 8 35 35 H 1.09001 * 109.47394 * 299.99918 * 11 10 9 36 36 H 1.09001 * 109.47210 * 60.00384 * 11 10 9 37 37 H 0.97002 * 120.00007 * 179.97438 * 15 14 12 38 38 H 0.96692 * 117.00348 * 179.97438 * 24 22 20 39 39 H 1.09003 * 109.50322 * 180.87695 * 25 20 9 40 40 H 1.09000 * 109.53405 * 60.78134 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9565 0.7832 -0.8916 7 6 4.1154 0.5808 1.2490 8 6 5.6396 0.7171 1.2739 9 7 6.0050 2.1394 1.2816 10 6 7.4549 2.3095 1.4449 11 6 8.1762 1.7400 0.2217 12 6 9.6638 1.9139 0.3895 13 1 10.0555 2.3833 1.2799 14 6 10.5245 1.4739 -0.5934 15 7 11.8226 1.6261 -0.4472 16 14 9.8470 0.6627 -2.1337 17 1 9.5924 1.6981 -3.1672 18 1 10.8330 -0.3203 -2.6501 19 1 8.5770 -0.0345 -1.8080 20 6 5.5290 2.8165 0.0685 21 1 5.9515 2.3280 -0.8095 22 6 5.9615 4.2599 0.0966 23 8 6.1145 4.8242 1.1540 24 8 6.1768 4.9185 -1.0529 25 6 4.0017 2.7428 0.0076 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.8448 -0.4748 1.2276 30 1 3.6938 1.0472 2.1393 31 1 6.0615 0.2385 0.3902 32 1 6.0323 0.2364 2.1699 33 1 7.7842 1.7810 2.3396 34 1 7.6876 3.3698 1.5430 35 1 7.9436 0.6797 0.1237 36 1 7.8470 2.2685 -0.6729 37 1 12.4283 1.3162 -1.1386 38 1 6.4525 5.8427 -0.9843 39 1 3.6497 3.2319 -0.9008 40 1 3.5776 3.2434 0.8780 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833710519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:24 Heat of formation + Delta-G solvation = -201.180315 kcal Electronic energy + Delta-G solvation = -23726.685003 eV Core-core repulsion = 20119.430725 eV Total energy + Delta-G solvation = -3607.254278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.10288 -41.36528 -39.56989 -37.61011 -37.06369 -36.01713 -34.52654 -32.51146 -31.58250 -28.96601 -27.51634 -25.80097 -24.93204 -23.19963 -22.90728 -21.52414 -20.34248 -19.21920 -19.06923 -18.65245 -17.99305 -17.41153 -17.02364 -16.84852 -16.46184 -16.27970 -15.91144 -15.19104 -14.89986 -14.85591 -14.62314 -14.30695 -14.22783 -13.93767 -13.63677 -13.49839 -13.02695 -12.83847 -12.66663 -12.54322 -12.47120 -12.39099 -12.11390 -11.87588 -11.81146 -11.72891 -11.56318 -11.46665 -11.37724 -11.15903 -10.77352 -9.26183 -8.30644 -6.36363 1.11544 1.13534 1.34914 1.36542 1.47452 1.66194 2.01780 2.34357 2.85600 3.04070 3.45987 3.63217 3.74778 3.90771 4.07173 4.18681 4.28463 4.33962 4.36365 4.36694 4.42180 4.48206 4.60096 4.72515 4.75424 4.78334 4.83368 4.95911 5.02093 5.22290 5.30509 5.34937 5.36800 5.52060 5.60616 5.90599 6.06020 6.27447 6.68931 6.71986 6.98969 7.28292 8.86148 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018930 B = 0.004961 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.752588 B = 5643.117527 C = 6264.819249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.476 3.524 4 O -0.536 6.536 5 C -0.077 4.077 6 H 0.135 0.865 7 C -0.098 4.098 8 C 0.051 3.949 9 N -0.527 5.527 10 C 0.069 3.931 11 C -0.036 4.036 12 C -0.531 4.531 13 H 0.027 0.973 14 C 0.006 3.994 15 N -0.951 5.951 16 Si 0.948 3.052 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.237 1.237 20 C 0.092 3.908 21 H 0.085 0.915 22 C 0.486 3.514 23 O -0.528 6.528 24 O -0.512 6.512 25 C -0.082 4.082 26 H 0.062 0.938 27 H 0.132 0.868 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.034 0.966 36 H 0.015 0.985 37 H 0.267 0.733 38 H 0.427 0.573 39 H 0.093 0.907 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.103 -4.751 -2.668 23.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.321 3.679 4 O -0.425 6.425 5 C -0.096 4.096 6 H 0.152 0.848 7 C -0.135 4.135 8 C -0.075 4.075 9 N -0.252 5.252 10 C -0.059 4.059 11 C -0.075 4.075 12 C -0.570 4.570 13 H 0.046 0.954 14 C -0.191 4.191 15 N -0.591 5.591 16 Si 0.771 3.229 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.160 1.160 20 C -0.018 4.018 21 H 0.103 0.897 22 C 0.328 3.672 23 O -0.416 6.416 24 O -0.326 6.326 25 C -0.120 4.120 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.288 0.712 39 H 0.111 0.889 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.510 -4.517 -2.069 24.029 hybrid contribution 1.076 0.562 -1.032 1.593 sum -22.434 -3.955 -3.101 22.990 Atomic orbital electron populations 1.23558 0.74822 1.05732 1.02476 1.86504 1.24885 1.32364 1.83504 1.23724 0.91885 0.81278 0.71063 1.90667 1.67802 1.37426 1.46644 1.21125 0.86862 0.97662 1.03948 0.84771 1.21616 0.93868 1.02403 0.95657 1.22272 0.95829 0.86375 1.03061 1.62165 1.14066 1.14181 1.34803 1.22052 0.84692 1.00633 0.98495 1.20079 0.94481 0.97161 0.95746 1.21299 0.91707 1.39140 1.04827 0.95414 1.26038 0.94808 0.96083 1.02156 1.70077 1.03882 1.48915 1.36241 0.85687 0.79530 0.78941 0.78742 1.19330 1.20983 1.16026 1.21217 0.97389 0.87858 0.95294 0.89695 1.23364 0.72558 0.90117 0.81133 1.90681 1.48238 1.69546 1.33159 1.84472 1.80076 1.32641 1.35381 1.21348 0.90023 0.96044 1.04566 0.91963 0.84998 0.92085 0.87040 0.90706 0.93229 0.88623 0.90857 0.92880 0.94764 0.96679 0.92458 0.71177 0.88873 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.52 16 2 O -0.36 -6.17 10.49 -51.47 -0.54 -6.71 16 3 C 0.48 9.99 7.26 71.24 0.52 10.50 16 4 O -0.54 -14.37 15.73 21.98 0.35 -14.02 16 5 C -0.08 -1.49 2.70 -11.46 -0.03 -1.52 16 6 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 7 C -0.10 -1.82 5.31 30.65 0.16 -1.65 16 8 C 0.05 1.27 5.03 86.33 0.43 1.70 16 9 N -0.53 -16.81 4.46 -875.49 -3.90 -20.71 16 10 C 0.07 2.77 4.80 86.30 0.41 3.19 16 11 C -0.04 -1.61 3.35 29.85 0.10 -1.51 16 12 C -0.53 -30.36 9.66 25.60 0.25 -30.11 16 13 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 14 C 0.01 0.36 5.47 84.65 0.46 0.82 16 15 N -0.95 -59.41 13.96 21.44 0.30 -59.11 16 16 Si 0.95 42.66 27.47 68.60 1.88 44.55 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.24 -9.46 6.54 99.48 0.65 -8.81 16 20 C 0.09 2.73 1.75 44.19 0.08 2.80 16 21 H 0.09 2.48 6.61 -2.39 -0.02 2.46 16 22 C 0.49 16.19 6.39 71.24 0.46 16.64 16 23 O -0.53 -20.82 15.91 21.96 0.35 -20.47 16 24 O -0.51 -14.09 13.42 -51.35 -0.69 -14.78 16 25 C -0.08 -1.97 3.94 30.65 0.12 -1.85 16 26 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 27 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.77 8.13 -2.38 -0.02 0.75 16 29 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.23 6.74 -2.39 -0.02 1.22 16 32 H 0.10 2.26 8.07 -2.39 -0.02 2.24 16 33 H 0.07 2.96 8.07 -2.39 -0.02 2.94 16 34 H 0.05 2.41 6.01 -2.39 -0.01 2.40 16 35 H 0.03 1.45 5.72 -2.39 -0.01 1.43 16 36 H 0.01 0.66 5.88 -2.39 -0.01 0.65 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.43 8.10 9.10 -74.06 -0.67 7.43 16 39 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 2.04 8.04 -2.39 -0.02 2.02 16 Total: -1.00 -76.10 325.94 2.24 -73.86 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.33 Total: 16.86 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 4.16 Total: 0.53 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -3.60 Total: -79.82 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -0.53 Total: -55.98 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.55 kcal Total: -76.10 2.24 -73.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833710519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.318 kcal (2) G-P(sol) polarization free energy of solvation -76.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds