Wall clock time and date at job start Tue Mar 31 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47571 * 2 1 4 4 C 1.52998 * 109.46861 * 120.00398 * 2 1 3 5 5 C 1.53003 * 109.46965 * 299.99175 * 4 2 1 6 6 C 1.50700 * 109.47328 * 180.02562 * 5 4 2 7 7 O 1.20835 * 119.99600 * 0.02562 * 6 5 4 8 8 O 1.34228 * 120.00368 * 180.02562 * 6 5 4 9 9 C 1.45198 * 117.00205 * 180.02562 * 8 6 5 10 10 C 1.52991 * 109.47075 * 179.97438 * 9 8 6 11 11 C 1.50701 * 115.55544 * 294.88682 * 10 9 8 12 12 H 1.07995 * 119.99892 * 95.15843 * 11 10 9 13 13 C 1.37875 * 119.99625 * 274.89404 * 11 10 9 14 14 N 1.31516 * 120.00645 * 6.38641 * 13 11 10 15 15 Si 1.86804 * 119.99966 * 186.39037 * 13 11 10 16 16 H 1.48497 * 109.46911 * 59.99497 * 15 13 11 17 17 H 1.48501 * 109.47278 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46934 * 299.99733 * 15 13 11 19 19 C 1.52999 * 117.50107 * 80.55676 * 10 9 8 20 20 C 1.53002 * 117.49851 * 149.21518 * 10 9 8 21 21 N 1.46503 * 109.46883 * 239.99632 * 2 1 3 22 22 O 1.21801 * 120.00016 * 30.00594 * 21 2 1 23 23 O 1.21802 * 119.99980 * 210.00016 * 21 2 1 24 24 H 1.09002 * 109.47131 * 300.00176 * 1 2 3 25 25 H 1.09006 * 109.47215 * 59.99807 * 1 2 3 26 26 H 1.08996 * 109.47784 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47359 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47009 * 300.00319 * 3 2 1 29 29 H 1.09002 * 109.47037 * 59.99766 * 3 2 1 30 30 H 1.09006 * 109.47042 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47684 * 59.99535 * 4 2 1 32 32 H 1.09004 * 109.46971 * 60.00633 * 5 4 2 33 33 H 1.08998 * 109.47214 * 300.00648 * 5 4 2 34 34 H 1.09001 * 109.46840 * 59.99792 * 9 8 6 35 35 H 1.09000 * 109.47129 * 299.99899 * 9 8 6 36 36 H 0.96998 * 120.00543 * 180.02562 * 14 13 11 37 37 H 1.08998 * 117.50651 * 215.00344 * 19 10 9 38 38 H 1.09007 * 117.49575 * 0.02562 * 19 10 9 39 39 H 1.09004 * 117.50100 * 359.97438 * 20 10 9 40 40 H 1.09000 * 117.49932 * 144.97481 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5300 0.0000 2.4985 6 6 2.0327 -0.7101 3.7289 7 8 2.7280 -1.6921 3.6180 8 8 1.7082 -0.2517 4.9481 9 6 2.2283 -0.9852 6.0881 10 6 1.7568 -0.3183 7.3818 11 6 2.2834 1.0725 7.6255 12 1 1.6962 1.9309 7.3342 13 6 3.5122 1.2491 8.2253 14 7 4.2798 0.2097 8.4705 15 14 4.0869 2.9648 8.6898 16 1 3.1282 3.5641 9.6525 17 1 5.4311 2.8840 9.3157 18 1 4.1579 3.8100 7.4707 19 6 0.3377 -0.6304 7.8610 20 6 1.5422 -1.2162 8.6019 21 7 2.0183 -0.6907 -1.1962 22 8 1.3600 -0.6733 -2.2208 23 8 3.0825 -1.2823 -1.1660 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7210 1.2495 31 1 1.6765 -1.7490 1.2492 32 1 0.4400 0.0000 2.4985 33 1 1.8934 1.0276 2.4984 34 1 3.3178 -0.9835 6.0550 35 1 1.8655 -2.0126 6.0554 36 1 5.1442 0.3340 8.8928 37 1 -0.2151 0.1702 8.3524 38 1 -0.2599 -1.3112 7.2547 39 1 1.7365 -2.2822 8.4828 40 1 1.7823 -0.8011 9.5808 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835189197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:11 Heat of formation + Delta-G solvation = -83.862884 kcal Electronic energy + Delta-G solvation = -22806.446826 eV Core-core repulsion = 19204.279814 eV Total energy + Delta-G solvation = -3602.167012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.57171 -40.03650 -37.64966 -36.74036 -36.61323 -35.35074 -32.04328 -31.51109 -28.23938 -27.41246 -27.08363 -25.53994 -24.66453 -21.44993 -21.15266 -19.97459 -19.34351 -18.77151 -18.21105 -17.62650 -16.91431 -16.55730 -16.24667 -15.40759 -14.94795 -14.62149 -14.57220 -13.95040 -13.70366 -13.50925 -13.09827 -12.75000 -12.64211 -12.24526 -12.17192 -11.98059 -11.71011 -11.66064 -11.54551 -11.31482 -11.15388 -11.06429 -11.04392 -10.94450 -10.62884 -10.38171 -10.17887 -9.97195 -9.65264 -8.91983 -8.54864 -8.30143 -6.14552 -4.20641 0.43757 1.45951 2.56211 3.03976 3.23835 3.29764 3.31285 3.72349 3.79256 3.98943 4.31870 4.51144 4.65507 4.84381 4.86434 4.93914 5.01107 5.08985 5.15161 5.19396 5.31715 5.38176 5.49594 5.56654 5.73165 5.88649 6.14617 6.20582 6.23971 6.42815 6.55688 6.64053 6.94998 7.13053 7.27100 7.37904 7.49408 7.78237 8.21508 8.32089 8.80820 9.45669 10.94751 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.003560 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.688703 B = 7862.632377 C = 8324.863322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.043 3.957 3 C -0.160 4.160 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.453 3.547 7 O -0.519 6.519 8 O -0.336 6.336 9 C 0.116 3.884 10 C 0.038 3.962 11 C -0.493 4.493 12 H 0.063 0.937 13 C 0.070 3.930 14 N -0.880 5.880 15 Si 0.893 3.107 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.205 4.205 20 C -0.145 4.145 21 N -0.013 5.013 22 O -0.166 6.166 23 O -0.157 6.157 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.263 0.737 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.403 1.638 -13.926 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.036 4.036 3 C -0.217 4.217 4 C -0.147 4.147 5 C -0.152 4.152 6 C 0.296 3.704 7 O -0.409 6.409 8 O -0.251 6.251 9 C 0.043 3.957 10 C 0.037 3.963 11 C -0.530 4.530 12 H 0.081 0.919 13 C -0.134 4.134 14 N -0.517 5.517 15 Si 0.721 3.279 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.243 4.243 20 C -0.183 4.183 21 N 0.509 4.491 22 O -0.385 6.385 23 O -0.378 6.378 24 H 0.117 0.883 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.279 1.667 -13.170 15.140 hybrid contribution 0.643 0.547 0.139 0.856 sum -6.636 2.214 -13.031 14.790 Atomic orbital electron populations 1.22245 0.88876 1.05027 1.05552 1.23608 0.99131 0.96197 0.84628 1.22310 1.03512 0.90201 1.05700 1.21664 1.04380 0.99752 0.88935 1.21379 1.03470 1.01135 0.89195 1.23200 0.78181 0.82954 0.86053 1.90661 1.35994 1.26395 1.87828 1.86503 1.68540 1.55749 1.14320 1.22946 0.99418 0.91479 0.81879 1.18770 0.92888 0.96032 0.88609 1.20333 1.02884 0.89754 1.40078 0.91929 1.25017 0.96317 0.96872 0.95188 1.69979 1.10436 1.29531 1.41728 0.86645 0.77846 0.84541 0.78908 1.20096 1.21213 1.20171 1.23010 0.92293 1.03087 1.05862 1.22552 1.01039 0.96704 0.97977 1.45004 1.00415 0.99531 1.04129 1.94505 1.56366 1.65290 1.22297 1.94568 1.10147 1.41941 1.91153 0.88252 0.89414 0.90591 0.90004 0.90229 0.87548 0.87812 0.89209 0.87298 0.86987 0.90440 0.94251 0.92744 0.90030 0.91578 0.91604 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 7.78 37.16 0.29 -0.79 16 2 C 0.04 0.38 1.01 -131.82 -0.13 0.25 16 3 C -0.16 -1.12 8.44 37.15 0.31 -0.80 16 4 C -0.11 -1.17 3.21 -26.73 -0.09 -1.25 16 5 C -0.11 -1.22 5.11 -27.88 -0.14 -1.37 16 6 C 0.45 7.75 7.96 36.01 0.29 8.04 16 7 O -0.52 -10.37 15.73 -18.76 -0.30 -10.67 16 8 O -0.34 -6.81 10.16 -39.25 -0.40 -7.21 16 9 C 0.12 2.64 5.29 37.15 0.20 2.84 16 10 C 0.04 0.90 1.61 -155.66 -0.25 0.65 16 11 C -0.49 -12.97 8.77 -34.44 -0.30 -13.27 16 12 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 13 C 0.07 1.84 5.39 -17.82 -0.10 1.75 16 14 N -0.88 -24.25 12.93 55.43 0.72 -23.54 16 15 Si 0.89 20.42 29.54 -169.99 -5.02 15.39 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 19 C -0.21 -4.29 9.96 -26.70 -0.27 -4.56 16 20 C -0.15 -3.27 9.43 -26.69 -0.25 -3.52 16 21 N -0.01 -0.16 3.85 0.53 0.00 -0.15 16 22 O -0.17 -2.09 18.10 -29.46 -0.53 -2.62 16 23 O -0.16 -2.19 18.10 -29.46 -0.53 -2.72 16 24 H 0.10 0.48 6.43 -51.93 -0.33 0.15 16 25 H 0.09 0.55 7.79 -51.93 -0.40 0.14 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.11 0.55 6.43 -51.93 -0.33 0.22 16 30 H 0.10 1.27 7.75 -51.93 -0.40 0.86 16 31 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 32 H 0.11 0.89 6.43 -51.93 -0.33 0.55 16 33 H 0.11 1.00 6.43 -51.93 -0.33 0.67 16 34 H 0.08 1.97 8.13 -51.93 -0.42 1.55 16 35 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 38 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -30.80 342.39 -7.26 -38.06 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.91 Total: 0.34 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -0.44 Total: -12.04 kcal Atomic # 7 Polarization: -24.41 SS G_CDS: 0.72 Total: -23.69 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -1.76 Total: -23.22 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.80 -7.26 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835189197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.804 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds