Wall clock time and date at job start Tue Mar 31 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47571 * 2 1 4 4 C 1.52998 * 109.46861 * 120.00398 * 2 1 3 5 5 C 1.53003 * 109.46965 * 299.99175 * 4 2 1 6 6 C 1.50700 * 109.47328 * 180.02562 * 5 4 2 7 7 O 1.20835 * 119.99600 * 0.02562 * 6 5 4 8 8 O 1.34228 * 120.00368 * 180.02562 * 6 5 4 9 9 C 1.45198 * 117.00205 * 180.02562 * 8 6 5 10 10 C 1.52991 * 109.47075 * 179.97438 * 9 8 6 11 11 C 1.50701 * 115.55544 * 294.88682 * 10 9 8 12 12 H 1.07995 * 119.99892 * 95.15843 * 11 10 9 13 13 C 1.37875 * 119.99625 * 274.89404 * 11 10 9 14 14 N 1.31516 * 120.00645 * 6.38641 * 13 11 10 15 15 Si 1.86804 * 119.99966 * 186.39037 * 13 11 10 16 16 H 1.48497 * 109.46911 * 59.99497 * 15 13 11 17 17 H 1.48501 * 109.47278 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46934 * 299.99733 * 15 13 11 19 19 C 1.52999 * 117.50107 * 80.55676 * 10 9 8 20 20 C 1.53002 * 117.49851 * 149.21518 * 10 9 8 21 21 N 1.46503 * 109.46883 * 239.99632 * 2 1 3 22 22 O 1.21801 * 120.00016 * 30.00594 * 21 2 1 23 23 O 1.21802 * 119.99980 * 210.00016 * 21 2 1 24 24 H 1.09002 * 109.47131 * 300.00176 * 1 2 3 25 25 H 1.09006 * 109.47215 * 59.99807 * 1 2 3 26 26 H 1.08996 * 109.47784 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47359 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47009 * 300.00319 * 3 2 1 29 29 H 1.09002 * 109.47037 * 59.99766 * 3 2 1 30 30 H 1.09006 * 109.47042 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47684 * 59.99535 * 4 2 1 32 32 H 1.09004 * 109.46971 * 60.00633 * 5 4 2 33 33 H 1.08998 * 109.47214 * 300.00648 * 5 4 2 34 34 H 1.09001 * 109.46840 * 59.99792 * 9 8 6 35 35 H 1.09000 * 109.47129 * 299.99899 * 9 8 6 36 36 H 0.96998 * 120.00543 * 180.02562 * 14 13 11 37 37 H 1.08998 * 117.50651 * 215.00344 * 19 10 9 38 38 H 1.09007 * 117.49575 * 0.02562 * 19 10 9 39 39 H 1.09004 * 117.50100 * 359.97438 * 20 10 9 40 40 H 1.09000 * 117.49932 * 144.97481 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5300 0.0000 2.4985 6 6 2.0327 -0.7101 3.7289 7 8 2.7280 -1.6921 3.6180 8 8 1.7082 -0.2517 4.9481 9 6 2.2283 -0.9852 6.0881 10 6 1.7568 -0.3183 7.3818 11 6 2.2834 1.0725 7.6255 12 1 1.6962 1.9309 7.3342 13 6 3.5122 1.2491 8.2253 14 7 4.2798 0.2097 8.4705 15 14 4.0869 2.9648 8.6898 16 1 3.1282 3.5641 9.6525 17 1 5.4311 2.8840 9.3157 18 1 4.1579 3.8100 7.4707 19 6 0.3377 -0.6304 7.8610 20 6 1.5422 -1.2162 8.6019 21 7 2.0183 -0.6907 -1.1962 22 8 1.3600 -0.6733 -2.2208 23 8 3.0825 -1.2823 -1.1660 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7210 1.2495 31 1 1.6765 -1.7490 1.2492 32 1 0.4400 0.0000 2.4985 33 1 1.8934 1.0276 2.4984 34 1 3.3178 -0.9835 6.0550 35 1 1.8655 -2.0126 6.0554 36 1 5.1442 0.3340 8.8928 37 1 -0.2151 0.1702 8.3524 38 1 -0.2599 -1.3112 7.2547 39 1 1.7365 -2.2822 8.4828 40 1 1.7823 -0.8011 9.5808 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835189197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:09 Heat of formation + Delta-G solvation = -100.151718 kcal Electronic energy + Delta-G solvation = -22807.153163 eV Core-core repulsion = 19204.279814 eV Total energy + Delta-G solvation = -3602.873349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.45936 -41.48072 -38.86897 -38.09831 -37.56340 -36.94326 -34.03369 -32.46557 -28.87950 -28.74622 -28.05955 -27.40658 -25.87496 -23.02766 -22.37852 -21.21813 -21.08301 -19.68947 -19.19128 -18.53216 -18.40197 -18.00385 -17.62520 -16.93682 -16.60262 -15.96887 -15.58024 -15.27708 -14.83206 -14.40322 -14.12142 -13.92366 -13.77792 -13.65109 -13.30974 -13.15157 -12.91834 -12.79837 -12.66318 -12.56981 -12.42239 -12.39019 -12.20074 -12.14080 -12.10441 -11.97972 -11.72794 -11.68286 -11.39040 -10.79312 -10.49982 -10.09994 -8.14579 -6.26306 -0.56758 0.64449 1.20011 1.42940 1.44327 1.51697 1.74722 2.41837 2.92806 3.12361 3.14921 3.25315 3.44124 3.57647 3.86439 3.92167 4.12652 4.23387 4.34715 4.37997 4.40253 4.47334 4.49912 4.58114 4.58479 4.64424 4.80641 4.84392 4.93089 4.95606 5.03602 5.17398 5.28330 5.44746 5.57044 5.69785 5.74092 6.34279 6.46947 6.77863 6.79800 7.43057 8.94048 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.003560 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.688703 B = 7862.632377 C = 8324.863322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.048 3.952 3 C -0.161 4.161 4 C -0.104 4.104 5 C -0.100 4.100 6 C 0.447 3.553 7 O -0.555 6.555 8 O -0.343 6.343 9 C 0.128 3.872 10 C 0.005 3.995 11 C -0.505 4.505 12 H 0.060 0.940 13 C 0.023 3.977 14 N -0.911 5.911 15 Si 0.952 3.048 16 H -0.268 1.268 17 H -0.289 1.289 18 H -0.269 1.269 19 C -0.175 4.175 20 C -0.152 4.152 21 N -0.010 5.010 22 O -0.151 6.151 23 O -0.214 6.214 24 H 0.128 0.872 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.133 0.867 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.140 0.860 34 H 0.038 0.962 35 H 0.047 0.953 36 H 0.261 0.739 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.654 3.500 -14.681 17.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.030 4.030 3 C -0.218 4.218 4 C -0.143 4.143 5 C -0.137 4.137 6 C 0.292 3.708 7 O -0.446 6.446 8 O -0.259 6.259 9 C 0.055 3.945 10 C 0.005 3.995 11 C -0.542 4.542 12 H 0.078 0.922 13 C -0.178 4.178 14 N -0.549 5.549 15 Si 0.778 3.222 16 H -0.193 1.193 17 H -0.214 1.214 18 H -0.194 1.194 19 C -0.212 4.212 20 C -0.189 4.189 21 N 0.509 4.491 22 O -0.378 6.378 23 O -0.423 6.423 24 H 0.146 0.854 25 H 0.117 0.883 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.151 0.849 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.166 0.834 33 H 0.158 0.842 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.462 3.504 -13.896 17.173 hybrid contribution 1.253 -0.036 0.290 1.287 sum -8.209 3.467 -13.606 16.264 Atomic orbital electron populations 1.22389 0.86471 1.05381 1.07511 1.23820 1.00670 0.96374 0.82121 1.22448 1.03002 0.88718 1.07663 1.21536 1.03070 0.99520 0.90135 1.21543 1.05600 1.01258 0.85268 1.24445 0.77194 0.82669 0.86446 1.90653 1.37646 1.28277 1.88056 1.86501 1.68660 1.55800 1.14916 1.22491 0.97043 0.92071 0.82929 1.18870 0.95585 0.95584 0.89459 1.20627 1.02990 0.90884 1.39728 0.92227 1.25737 0.96534 1.00199 0.95301 1.70101 1.10654 1.31397 1.42727 0.85703 0.77215 0.80504 0.78797 1.19347 1.21429 1.19432 1.23020 0.91038 1.02840 1.04267 1.22491 1.02637 0.97020 0.96784 1.45525 0.99863 0.98972 1.04779 1.94471 1.55802 1.64273 1.23292 1.94586 1.11642 1.44415 1.91697 0.85399 0.88342 0.91082 0.91098 0.88926 0.84873 0.90110 0.90619 0.83378 0.84202 0.94338 0.93517 0.93055 0.89436 0.88973 0.90642 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 7.78 71.98 0.56 -0.99 16 2 C 0.05 0.74 1.01 3.60 0.00 0.75 16 3 C -0.16 -1.75 8.44 71.98 0.61 -1.14 16 4 C -0.10 -2.11 3.21 30.59 0.10 -2.01 16 5 C -0.10 -1.85 5.11 29.85 0.15 -1.70 16 6 C 0.45 14.88 7.96 71.24 0.57 15.44 16 7 O -0.55 -22.56 15.73 21.94 0.35 -22.22 16 8 O -0.34 -13.58 10.16 -51.40 -0.52 -14.10 16 9 C 0.13 5.90 5.29 71.98 0.38 6.28 16 10 C 0.01 0.26 1.61 -52.93 -0.08 0.17 16 11 C -0.50 -26.43 8.77 25.60 0.22 -26.21 16 12 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 13 C 0.02 1.20 5.39 84.65 0.46 1.66 16 14 N -0.91 -51.17 12.93 21.45 0.28 -50.90 16 15 Si 0.95 41.73 29.54 68.60 2.03 43.76 16 16 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 17 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 19 C -0.17 -6.95 9.96 30.62 0.30 -6.65 16 20 C -0.15 -6.79 9.43 30.62 0.29 -6.51 16 21 N -0.01 -0.23 3.85 -152.22 -0.59 -0.82 16 22 O -0.15 -3.57 18.10 18.88 0.34 -3.23 16 23 O -0.21 -6.19 18.10 18.88 0.34 -5.85 16 24 H 0.13 0.52 6.43 -2.39 -0.02 0.51 16 25 H 0.10 0.81 7.79 -2.38 -0.02 0.79 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.13 0.75 6.43 -2.39 -0.02 0.73 16 30 H 0.08 2.02 7.75 -2.38 -0.02 2.00 16 31 H 0.08 1.75 8.10 -2.39 -0.02 1.73 16 32 H 0.15 1.67 6.43 -2.39 -0.02 1.66 16 33 H 0.14 1.91 6.43 -2.39 -0.02 1.90 16 34 H 0.04 2.03 8.13 -2.39 -0.02 2.01 16 35 H 0.05 2.02 8.09 -2.39 -0.02 2.00 16 36 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 37 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 39 H 0.08 3.16 8.14 -2.38 -0.02 3.15 16 40 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -69.15 342.39 6.82 -62.34 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 1.04 Total: 11.90 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 3.56 Total: -20.90 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.31 Total: -51.71 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: 0.51 Total: -45.39 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -69.15 6.82 -62.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835189197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.815 kcal (2) G-P(sol) polarization free energy of solvation -69.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds