Wall clock time and date at job start Tue Mar 31 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46717 * 2 1 4 4 C 1.53001 * 109.46831 * 119.99449 * 2 1 3 5 5 C 1.52999 * 109.47399 * 300.00407 * 4 2 1 6 6 C 1.50703 * 109.46850 * 179.97438 * 5 4 2 7 7 O 1.20824 * 120.00159 * 0.02562 * 6 5 4 8 8 O 1.34233 * 119.99694 * 179.97438 * 6 5 4 9 9 C 1.45191 * 116.99742 * 185.11513 * 8 6 5 10 10 C 1.50701 * 112.85371 * 296.94574 * 9 8 6 11 11 H 1.08004 * 119.99923 * 115.13254 * 10 9 8 12 12 C 1.37877 * 119.99806 * 295.41590 * 10 9 8 13 13 N 1.31512 * 120.00075 * 4.92997 * 12 10 9 14 14 Si 1.86803 * 119.99926 * 184.94296 * 12 10 9 15 15 H 1.48502 * 109.47197 * 59.99063 * 14 12 10 16 16 H 1.48496 * 109.47285 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46697 * 299.99390 * 14 12 10 18 18 C 1.53785 * 113.61631 * 68.14533 * 9 8 6 19 19 C 1.53959 * 87.02053 * 89.22699 * 18 9 8 20 20 C 1.53784 * 87.11062 * 25.36457 * 19 18 9 21 21 N 1.46498 * 109.47396 * 239.99623 * 2 1 3 22 22 O 1.21808 * 119.99762 * 30.00533 * 21 2 1 23 23 O 1.21799 * 120.00160 * 209.99680 * 21 2 1 24 24 H 1.08993 * 109.47487 * 300.00267 * 1 2 3 25 25 H 1.09004 * 109.46429 * 60.00228 * 1 2 3 26 26 H 1.09003 * 109.46948 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46923 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47259 * 299.99431 * 3 2 1 29 29 H 1.09001 * 109.47703 * 60.00211 * 3 2 1 30 30 H 1.09000 * 109.46656 * 180.02562 * 4 2 1 31 31 H 1.09003 * 109.46839 * 60.00565 * 4 2 1 32 32 H 1.08995 * 109.47129 * 59.99813 * 5 4 2 33 33 H 1.08995 * 109.46911 * 299.99912 * 5 4 2 34 34 H 0.96998 * 120.00027 * 185.00155 * 13 12 10 35 35 H 1.08993 * 113.61470 * 203.74528 * 18 9 8 36 36 H 1.08997 * 113.61498 * 334.64983 * 18 9 8 37 37 H 1.08997 * 113.53953 * 270.81115 * 19 18 9 38 38 H 1.09001 * 113.74435 * 139.94021 * 19 18 9 39 39 H 1.09002 * 113.61550 * 220.09147 * 20 19 18 40 40 H 1.09001 * 113.69217 * 89.19816 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5299 0.0001 2.4985 6 6 2.0317 -0.7107 3.7290 7 8 2.7264 -1.6930 3.6182 8 8 1.7077 -0.2518 4.9482 9 6 2.3178 -0.9159 6.0860 10 6 1.9195 -2.3648 6.2007 11 1 2.6626 -3.1400 6.0845 12 6 0.6055 -2.7010 6.4480 13 7 -0.3167 -1.7642 6.4876 14 14 0.1350 -4.4871 6.7274 15 1 0.8683 -5.0136 7.9066 16 1 -1.3267 -4.5817 6.9712 17 1 0.4898 -5.2860 5.5268 18 6 3.8341 -0.6834 6.1948 19 6 3.5015 0.5628 7.0354 20 6 2.1803 -0.1333 7.4026 21 7 2.0184 -0.6907 -1.1961 22 8 1.3602 -0.6732 -2.2208 23 8 3.0827 -1.2822 -1.1659 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 -0.7207 1.2495 31 1 1.6767 -1.7488 1.2493 32 1 0.4399 0.0001 2.4985 33 1 1.8932 1.0277 2.4985 34 1 -1.2275 -1.9903 6.7329 35 1 4.3559 -1.4603 6.7535 36 1 4.3101 -0.4539 5.2416 37 1 3.3684 1.4663 6.4405 38 1 4.1683 0.7099 7.8851 39 1 1.3231 0.5398 7.4230 40 1 2.2477 -0.7597 8.2921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835399094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:07 Heat of formation + Delta-G solvation = -81.922414 kcal Electronic energy + Delta-G solvation = -23706.892545 eV Core-core repulsion = 20104.809678 eV Total energy + Delta-G solvation = -3602.082867 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.40181 -39.60083 -37.77568 -36.61571 -36.45417 -34.16768 -32.41237 -31.05237 -28.06918 -27.12786 -26.61151 -25.03121 -24.62859 -22.62080 -21.13084 -19.78786 -18.60525 -18.34073 -17.87858 -17.46081 -17.02523 -15.83471 -15.53785 -15.04117 -14.77339 -14.37211 -14.28157 -13.92371 -13.46210 -13.34149 -13.07550 -12.46191 -12.35958 -12.09317 -11.87931 -11.63413 -11.48729 -11.40479 -11.33336 -11.16995 -11.05673 -10.99671 -10.91859 -10.83475 -10.55177 -10.21534 -10.07305 -10.00718 -9.40374 -8.86493 -8.57818 -8.45764 -6.15068 -4.25532 0.60544 1.64557 3.24476 3.28999 3.30445 3.34705 3.55469 3.95357 4.02831 4.26999 4.33082 4.86636 4.89895 5.01167 5.07276 5.15089 5.20664 5.23223 5.41911 5.47586 5.59626 5.63345 5.66180 5.75869 5.86876 6.03097 6.08557 6.33688 6.36442 6.38430 6.69115 6.75704 7.08443 7.17534 7.43712 7.66313 7.73109 7.83717 8.24873 8.76796 9.07118 9.44114 10.89568 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018541 B = 0.004883 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.779554 B = 5733.205659 C = 6462.878702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.043 3.957 3 C -0.157 4.157 4 C -0.106 4.106 5 C -0.116 4.116 6 C 0.460 3.540 7 O -0.503 6.503 8 O -0.336 6.336 9 C 0.234 3.766 10 C -0.517 4.517 11 H 0.065 0.935 12 C 0.075 3.925 13 N -0.867 5.867 14 Si 0.890 3.110 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.096 4.096 21 N -0.012 5.012 22 O -0.169 6.169 23 O -0.157 6.157 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.262 0.738 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 8.629 -8.340 12.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.036 4.036 3 C -0.214 4.214 4 C -0.144 4.144 5 C -0.155 4.155 6 C 0.301 3.699 7 O -0.392 6.392 8 O -0.251 6.251 9 C 0.200 3.800 10 C -0.555 4.555 11 H 0.083 0.917 12 C -0.131 4.131 13 N -0.504 5.504 14 Si 0.717 3.283 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.190 4.190 19 C -0.190 4.190 20 C -0.133 4.133 21 N 0.510 4.490 22 O -0.388 6.388 23 O -0.379 6.379 24 H 0.118 0.882 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.980 8.737 -7.707 11.691 hybrid contribution -0.290 -1.236 -0.087 1.273 sum 0.689 7.501 -7.795 10.839 Atomic orbital electron populations 1.22235 0.88928 1.05139 1.05329 1.23648 0.99154 0.96049 0.84742 1.22275 1.03250 0.90434 1.05470 1.21638 1.03899 0.99997 0.88874 1.21401 1.03465 1.00244 0.90374 1.22583 0.78548 0.83249 0.85471 1.90608 1.36063 1.24835 1.87673 1.86391 1.65409 1.59206 1.14127 1.20637 0.86861 0.91559 0.80982 1.21205 0.94023 0.90755 1.49495 0.91657 1.25057 0.96260 0.97485 0.94253 1.70039 1.02162 1.32796 1.45402 0.86688 0.77266 0.85278 0.79073 1.19890 1.21169 1.20045 1.23483 0.99396 0.97231 0.98899 1.23025 0.99196 0.97335 0.99405 1.22731 0.95131 0.97968 0.97500 1.45038 1.00351 0.99474 1.04137 1.94493 1.56406 1.65433 1.22428 1.94554 1.10235 1.41967 1.91146 0.88223 0.89646 0.90559 0.90205 0.90427 0.87691 0.88180 0.89200 0.87880 0.88290 0.92814 0.90007 0.93176 0.91415 0.92819 0.91894 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 7.78 37.16 0.29 -1.24 16 2 C 0.04 0.48 1.01 -131.82 -0.13 0.34 16 3 C -0.16 -1.33 8.44 37.16 0.31 -1.01 16 4 C -0.11 -1.46 3.21 -26.73 -0.09 -1.55 16 5 C -0.12 -1.67 5.11 -27.88 -0.14 -1.81 16 6 C 0.46 9.73 7.34 36.01 0.26 9.99 16 7 O -0.50 -12.16 14.20 -18.75 -0.27 -12.43 16 8 O -0.34 -7.89 9.83 -39.27 -0.39 -8.28 16 9 C 0.23 5.67 0.33 -90.95 -0.03 5.64 16 10 C -0.52 -14.05 7.16 -34.44 -0.25 -14.30 16 11 H 0.07 1.84 7.82 -52.48 -0.41 1.43 16 12 C 0.07 2.02 5.38 -17.82 -0.10 1.92 16 13 N -0.87 -23.79 12.79 55.43 0.71 -23.08 16 14 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 C -0.15 -3.23 6.97 -25.82 -0.18 -3.41 16 19 C -0.15 -2.83 8.03 -25.82 -0.21 -3.04 16 20 C -0.10 -2.10 7.08 -25.91 -0.18 -2.28 16 21 N -0.01 -0.17 3.85 0.54 0.00 -0.16 16 22 O -0.17 -2.44 18.10 -29.46 -0.53 -2.97 16 23 O -0.16 -2.49 18.10 -29.46 -0.53 -3.02 16 24 H 0.10 0.81 6.43 -51.93 -0.33 0.47 16 25 H 0.08 0.72 7.79 -51.93 -0.40 0.32 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.70 6.43 -51.93 -0.33 0.37 16 30 H 0.10 1.46 7.75 -51.93 -0.40 1.06 16 31 H 0.09 1.42 8.10 -51.93 -0.42 1.00 16 32 H 0.10 1.36 6.43 -51.93 -0.33 1.03 16 33 H 0.10 1.11 6.43 -51.93 -0.33 0.78 16 34 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 35 H 0.08 1.71 8.09 -51.93 -0.42 1.29 16 36 H 0.05 1.05 7.55 -51.93 -0.39 0.66 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.08 1.83 8.09 -51.93 -0.42 1.41 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -31.37 333.67 -7.32 -38.69 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.88 Total: 0.85 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -0.44 Total: -10.74 kcal Atomic # 7 Polarization: -23.95 SS G_CDS: 0.71 Total: -23.24 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.72 Total: -26.70 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.37 -7.32 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835399094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.232 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds