Wall clock time and date at job start Tue Mar 31 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46717 * 2 1 4 4 C 1.53001 * 109.46831 * 119.99449 * 2 1 3 5 5 C 1.52999 * 109.47399 * 300.00407 * 4 2 1 6 6 C 1.50703 * 109.46850 * 179.97438 * 5 4 2 7 7 O 1.20824 * 120.00159 * 0.02562 * 6 5 4 8 8 O 1.34233 * 119.99694 * 179.97438 * 6 5 4 9 9 C 1.45191 * 116.99742 * 185.11513 * 8 6 5 10 10 C 1.50701 * 112.85371 * 296.94574 * 9 8 6 11 11 H 1.08004 * 119.99923 * 115.13254 * 10 9 8 12 12 C 1.37877 * 119.99806 * 295.41590 * 10 9 8 13 13 N 1.31512 * 120.00075 * 4.92997 * 12 10 9 14 14 Si 1.86803 * 119.99926 * 184.94296 * 12 10 9 15 15 H 1.48502 * 109.47197 * 59.99063 * 14 12 10 16 16 H 1.48496 * 109.47285 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46697 * 299.99390 * 14 12 10 18 18 C 1.53785 * 113.61631 * 68.14533 * 9 8 6 19 19 C 1.53959 * 87.02053 * 89.22699 * 18 9 8 20 20 C 1.53784 * 87.11062 * 25.36457 * 19 18 9 21 21 N 1.46498 * 109.47396 * 239.99623 * 2 1 3 22 22 O 1.21808 * 119.99762 * 30.00533 * 21 2 1 23 23 O 1.21799 * 120.00160 * 209.99680 * 21 2 1 24 24 H 1.08993 * 109.47487 * 300.00267 * 1 2 3 25 25 H 1.09004 * 109.46429 * 60.00228 * 1 2 3 26 26 H 1.09003 * 109.46948 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46923 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47259 * 299.99431 * 3 2 1 29 29 H 1.09001 * 109.47703 * 60.00211 * 3 2 1 30 30 H 1.09000 * 109.46656 * 180.02562 * 4 2 1 31 31 H 1.09003 * 109.46839 * 60.00565 * 4 2 1 32 32 H 1.08995 * 109.47129 * 59.99813 * 5 4 2 33 33 H 1.08995 * 109.46911 * 299.99912 * 5 4 2 34 34 H 0.96998 * 120.00027 * 185.00155 * 13 12 10 35 35 H 1.08993 * 113.61470 * 203.74528 * 18 9 8 36 36 H 1.08997 * 113.61498 * 334.64983 * 18 9 8 37 37 H 1.08997 * 113.53953 * 270.81115 * 19 18 9 38 38 H 1.09001 * 113.74435 * 139.94021 * 19 18 9 39 39 H 1.09002 * 113.61550 * 220.09147 * 20 19 18 40 40 H 1.09001 * 113.69217 * 89.19816 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5299 0.0001 2.4985 6 6 2.0317 -0.7107 3.7290 7 8 2.7264 -1.6930 3.6182 8 8 1.7077 -0.2518 4.9482 9 6 2.3178 -0.9159 6.0860 10 6 1.9195 -2.3648 6.2007 11 1 2.6626 -3.1400 6.0845 12 6 0.6055 -2.7010 6.4480 13 7 -0.3167 -1.7642 6.4876 14 14 0.1350 -4.4871 6.7274 15 1 0.8683 -5.0136 7.9066 16 1 -1.3267 -4.5817 6.9712 17 1 0.4898 -5.2860 5.5268 18 6 3.8341 -0.6834 6.1948 19 6 3.5015 0.5628 7.0354 20 6 2.1803 -0.1333 7.4026 21 7 2.0184 -0.6907 -1.1961 22 8 1.3602 -0.6732 -2.2208 23 8 3.0827 -1.2822 -1.1659 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 -0.7207 1.2495 31 1 1.6767 -1.7488 1.2493 32 1 0.4399 0.0001 2.4985 33 1 1.8932 1.0277 2.4985 34 1 -1.2275 -1.9903 6.7329 35 1 4.3559 -1.4603 6.7535 36 1 4.3101 -0.4539 5.2416 37 1 3.3684 1.4663 6.4405 38 1 4.1683 0.7099 7.8851 39 1 1.3231 0.5398 7.4230 40 1 2.2477 -0.7597 8.2921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835399094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:06 Heat of formation + Delta-G solvation = -99.069235 kcal Electronic energy + Delta-G solvation = -23707.636087 eV Core-core repulsion = 20104.809678 eV Total energy + Delta-G solvation = -3602.826409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -43.46576 -41.29685 -39.21210 -37.92209 -37.57114 -35.93168 -34.45117 -32.24208 -28.76790 -28.54157 -28.07527 -26.46900 -26.26686 -24.31924 -22.42174 -21.13426 -20.02568 -19.69637 -19.27367 -18.61831 -18.47901 -17.29251 -17.08378 -16.76437 -16.64229 -15.86981 -15.31456 -15.30555 -14.98819 -14.25011 -14.11291 -13.88552 -13.57754 -13.31928 -13.28806 -13.16196 -12.95997 -12.82118 -12.67308 -12.56021 -12.40674 -12.35029 -12.19333 -12.13533 -12.00685 -11.95827 -11.83098 -11.67843 -11.13272 -10.80117 -10.49300 -10.30892 -8.19765 -6.35271 -0.55496 0.64890 1.32816 1.34852 1.41958 1.66839 2.14032 2.34956 2.95968 3.12032 3.16387 3.30020 3.67667 3.89684 3.94185 3.97699 4.14340 4.24588 4.33146 4.39890 4.45204 4.47279 4.56258 4.61421 4.69727 4.83753 4.86057 4.93610 5.00271 5.03748 5.08539 5.28305 5.35664 5.50112 5.63649 5.74359 5.96857 6.43201 6.48309 6.66960 7.28169 7.40970 8.83581 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018541 B = 0.004883 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.779554 B = 5733.205659 C = 6462.878702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.048 3.952 3 C -0.156 4.156 4 C -0.099 4.099 5 C -0.101 4.101 6 C 0.447 3.553 7 O -0.544 6.544 8 O -0.344 6.344 9 C 0.209 3.791 10 C -0.536 4.536 11 H 0.040 0.960 12 C 0.037 3.963 13 N -0.886 5.886 14 Si 0.938 3.062 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.287 1.287 18 C -0.152 4.152 19 C -0.124 4.124 20 C -0.096 4.096 21 N -0.009 5.009 22 O -0.153 6.153 23 O -0.211 6.211 24 H 0.122 0.878 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.132 0.868 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.123 0.877 33 H 0.142 0.858 34 H 0.264 0.736 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 10.832 -8.595 13.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.030 4.030 3 C -0.213 4.213 4 C -0.137 4.137 5 C -0.139 4.139 6 C 0.291 3.709 7 O -0.435 6.435 8 O -0.260 6.260 9 C 0.175 3.825 10 C -0.573 4.573 11 H 0.059 0.941 12 C -0.166 4.166 13 N -0.523 5.523 14 Si 0.764 3.236 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.214 1.214 18 C -0.189 4.189 19 C -0.161 4.161 20 C -0.134 4.134 21 N 0.509 4.491 22 O -0.380 6.380 23 O -0.421 6.421 24 H 0.140 0.860 25 H 0.121 0.879 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.150 0.850 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.160 0.840 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.318 10.917 -7.916 13.489 hybrid contribution -0.107 -1.930 -0.084 1.935 sum 0.211 8.986 -8.000 12.033 Atomic orbital electron populations 1.22358 0.87177 1.04894 1.07321 1.23817 1.00236 0.96811 0.82087 1.22421 1.03193 0.88102 1.07625 1.21464 1.03031 0.98889 0.90303 1.21473 1.04393 1.01355 0.86673 1.23850 0.77675 0.83028 0.86379 1.90590 1.37934 1.26829 1.88111 1.86357 1.65730 1.59002 1.14947 1.20850 0.88865 0.90574 0.82248 1.21356 0.93855 0.92188 1.49937 0.94146 1.25597 0.96255 1.00509 0.94266 1.70090 1.02260 1.33906 1.46051 0.85935 0.77560 0.81540 0.78559 1.19055 1.19957 1.21353 1.23430 0.97397 0.98737 0.99377 1.22889 0.97099 0.96320 0.99763 1.22676 0.96797 0.97800 0.96127 1.45493 0.99878 0.98969 1.04722 1.94461 1.55846 1.64390 1.23277 1.94572 1.11631 1.44251 1.91656 0.86001 0.87874 0.91972 0.90559 0.88752 0.85000 0.89594 0.92184 0.85937 0.84027 0.92663 0.90491 0.93435 0.89713 0.89740 0.92828 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 7.78 71.98 0.56 -2.04 16 2 C 0.05 0.99 1.01 3.61 0.00 0.99 16 3 C -0.16 -2.08 8.44 71.98 0.61 -1.47 16 4 C -0.10 -2.66 3.21 30.59 0.10 -2.56 16 5 C -0.10 -2.69 5.11 29.85 0.15 -2.54 16 6 C 0.45 18.77 7.34 71.24 0.52 19.29 16 7 O -0.54 -27.03 14.20 21.97 0.31 -26.72 16 8 O -0.34 -16.03 9.83 -51.45 -0.51 -16.54 16 9 C 0.21 10.17 0.33 -11.01 0.00 10.17 16 10 C -0.54 -29.77 7.16 25.60 0.18 -29.59 16 11 H 0.04 2.37 7.82 -2.91 -0.02 2.35 16 12 C 0.04 2.01 5.38 84.65 0.46 2.46 16 13 N -0.89 -48.67 12.79 21.45 0.27 -48.40 16 14 Si 0.94 43.88 29.54 68.60 2.03 45.91 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 18 C -0.15 -6.36 6.97 31.18 0.22 -6.14 16 19 C -0.12 -4.29 8.03 31.18 0.25 -4.04 16 20 C -0.10 -4.15 7.08 31.12 0.22 -3.93 16 21 N -0.01 -0.25 3.85 -152.21 -0.59 -0.84 16 22 O -0.15 -4.18 18.10 18.88 0.34 -3.84 16 23 O -0.21 -6.84 18.10 18.89 0.34 -6.50 16 24 H 0.12 1.46 6.43 -2.39 -0.02 1.44 16 25 H 0.10 1.36 7.79 -2.39 -0.02 1.34 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.09 1.01 8.14 -2.39 -0.02 1.00 16 29 H 0.13 1.07 6.43 -2.39 -0.02 1.06 16 30 H 0.09 2.56 7.75 -2.39 -0.02 2.54 16 31 H 0.06 1.97 8.10 -2.39 -0.02 1.95 16 32 H 0.12 2.85 6.43 -2.39 -0.02 2.84 16 33 H 0.14 2.58 6.43 -2.39 -0.02 2.56 16 34 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 35 H 0.08 3.23 8.09 -2.39 -0.02 3.21 16 36 H 0.05 1.97 7.55 -2.39 -0.02 1.96 16 37 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.07 3.28 8.09 -2.39 -0.02 3.26 16 Total: -1.00 -70.58 333.67 6.51 -64.08 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 1.04 Total: 12.25 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 3.27 Total: -19.41 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.31 Total: -49.23 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: 0.49 Total: -53.59 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -70.58 6.51 -64.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835399094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.994 kcal (2) G-P(sol) polarization free energy of solvation -70.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds