Wall clock time and date at job start Tue Mar 31 2020 05:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86807 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47349 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47038 * 300.00234 * 3 2 1 6 6 H 1.48499 * 109.46904 * 60.00049 * 3 2 1 7 7 C 1.38953 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99805 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99965 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99730 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99880 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.47085 * 180.02562 * 12 10 9 14 14 C 1.34223 * 117.00131 * 180.02562 * 13 12 10 15 15 O 1.20826 * 119.99989 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00009 * 179.97438 * 14 13 12 17 17 O 1.42902 * 109.47205 * 179.97438 * 16 14 13 18 18 C 1.42898 * 114.00186 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47319 * 180.02562 * 18 17 16 20 20 C 1.54267 * 110.03373 * 292.91285 * 19 18 17 21 21 C 1.54968 * 104.16137 * 217.13581 * 20 19 18 22 22 C 1.54884 * 102.77441 * 37.88396 * 21 20 19 23 23 C 1.53874 * 110.03593 * 175.69205 * 19 18 17 24 24 H 0.97002 * 120.00660 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00045 * 359.97438 * 9 7 2 26 26 H 1.09006 * 109.46807 * 60.00163 * 12 10 9 27 27 H 1.08993 * 109.47705 * 300.00622 * 12 10 9 28 28 H 1.09001 * 109.47017 * 60.00101 * 16 14 13 29 29 H 1.08999 * 109.47472 * 299.99778 * 16 14 13 30 30 H 1.09002 * 109.47259 * 300.00293 * 18 17 16 31 31 H 1.09001 * 109.47074 * 60.00315 * 18 17 16 32 32 H 1.09004 * 110.01939 * 54.29674 * 19 18 17 33 33 H 1.09001 * 110.48609 * 335.77840 * 20 19 18 34 34 H 1.08999 * 110.49311 * 98.42344 * 20 19 18 35 35 H 1.08997 * 110.72048 * 279.57487 * 21 20 19 36 36 H 1.08993 * 110.92252 * 156.29196 * 21 20 19 37 37 H 1.09009 * 110.48779 * 203.40596 * 22 21 20 38 38 H 1.09001 * 110.59973 * 80.82109 * 22 21 20 39 39 H 1.09003 * 110.03243 * 238.56963 * 23 19 18 40 40 H 1.09004 * 110.03196 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0026 11 8 3.2103 -3.5578 -0.0022 12 6 1.2439 -4.8629 -0.0032 13 8 2.1875 -5.9666 -0.0037 14 6 1.6745 -7.2069 -0.0048 15 8 0.4766 -7.3653 -0.0049 16 6 2.5925 -8.4020 -0.0060 17 8 1.8143 -9.6005 -0.0064 18 6 2.5926 -10.7989 -0.0081 19 6 1.6606 -12.0123 -0.0090 20 6 0.8918 -12.0892 1.3262 21 6 0.8067 -13.6069 1.6278 22 6 2.1857 -14.1283 1.1531 23 6 2.4827 -13.3084 -0.1194 24 1 -0.4851 0.8400 -0.0004 25 1 0.3534 -2.3906 -0.0016 26 1 0.6169 -4.9201 -0.8931 27 1 0.6175 -4.9213 0.8868 28 1 3.2214 -8.3779 0.8840 29 1 3.2213 -8.3764 -0.8960 30 1 3.2207 -10.8230 -0.8986 31 1 3.2221 -10.8246 0.8814 32 1 0.9590 -11.9433 -0.8403 33 1 1.4423 -11.5743 2.1136 34 1 -0.1062 -11.6647 1.2169 35 1 0.0016 -14.0691 1.0566 36 1 0.6729 -13.7848 2.6947 37 1 2.1314 -15.1913 0.9179 38 1 2.9469 -13.9447 1.9114 39 1 2.1795 -13.8687 -1.0039 40 1 3.5457 -13.0729 -0.1728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838329142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:16 Heat of formation + Delta-G solvation = -183.795497 kcal Electronic energy + Delta-G solvation = -21569.446178 eV Core-core repulsion = 17962.945763 eV Total energy + Delta-G solvation = -3606.500416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.34274 -39.10093 -38.16083 -37.25165 -35.95072 -34.00785 -31.40208 -31.03287 -29.25818 -28.93442 -27.42652 -24.71015 -24.40059 -21.18146 -20.96602 -19.96481 -19.58515 -18.09199 -17.75347 -16.97536 -16.83876 -16.40970 -15.85933 -15.61007 -15.43733 -15.17160 -14.55048 -14.18612 -13.98503 -13.69319 -13.60647 -13.09029 -12.71298 -12.32924 -12.08512 -11.87777 -11.63245 -11.60854 -11.45791 -11.32260 -11.15615 -11.07635 -10.91585 -10.74929 -10.42046 -10.39369 -10.34611 -10.25385 -9.95003 -9.62313 -8.53296 -8.08995 -6.50432 -3.92511 2.29628 2.29905 3.11493 3.23520 3.30688 3.67167 3.73017 4.11745 4.27520 4.28490 4.47899 4.61955 4.86056 4.91219 5.00003 5.03517 5.07793 5.11098 5.13155 5.14881 5.27978 5.33959 5.38904 5.46990 5.54108 5.56950 5.67913 5.69667 5.77891 5.95872 6.00177 6.04631 6.10798 6.60031 6.77681 7.47541 7.85977 7.96686 8.47895 9.06603 9.38807 9.88538 10.66823 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.061943 B = 0.002192 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.919863 B =12773.221548 C =13029.533139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.552 5.552 10 C 0.439 3.561 11 O -0.577 6.577 12 C 0.063 3.937 13 O -0.326 6.326 14 C 0.458 3.542 15 O -0.494 6.494 16 C 0.074 3.926 17 O -0.366 6.366 18 C 0.068 3.932 19 C -0.092 4.092 20 C -0.115 4.115 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.118 4.118 24 H 0.273 0.727 25 H 0.395 0.605 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.503 -24.572 1.013 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.190 5.190 10 C 0.223 3.777 11 O -0.461 6.461 12 C -0.015 4.015 13 O -0.241 6.241 14 C 0.299 3.701 15 O -0.381 6.381 16 C -0.004 4.004 17 O -0.285 6.285 18 C -0.008 4.008 19 C -0.110 4.110 20 C -0.153 4.153 21 C -0.166 4.166 22 C -0.163 4.163 23 C -0.156 4.156 24 H 0.083 0.917 25 H 0.229 0.771 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.619 -24.416 1.008 24.576 hybrid contribution -0.161 0.931 -0.042 0.945 sum 2.458 -23.485 0.966 23.633 Atomic orbital electron populations 1.69618 1.06008 1.28406 1.49672 1.25325 0.95699 0.99900 0.96904 0.85733 0.79696 0.80719 0.77799 1.19086 1.20625 1.20619 1.19780 0.93513 0.81727 1.48104 0.87537 1.41713 1.09403 1.04082 1.63776 1.19311 0.88320 0.84060 0.85983 1.90560 1.13415 1.86799 1.55304 1.22766 0.90779 0.84271 1.03664 1.86496 1.40457 1.13861 1.83258 1.23158 0.88530 0.84786 0.73626 1.90679 1.16624 1.86597 1.44198 1.21615 0.91851 0.82564 1.04346 1.87957 1.32708 1.12242 1.95591 1.22775 0.93693 0.83841 1.00498 1.21770 0.97251 0.92378 0.99606 1.22391 1.00860 0.95765 0.96250 1.22546 0.97131 0.95964 1.00911 1.22363 0.97468 0.99245 0.97200 1.22136 0.99896 0.95006 0.98527 0.91657 0.77121 0.89411 0.89416 0.88803 0.88785 0.92882 0.92748 0.89961 0.91435 0.91136 0.91545 0.91599 0.91720 0.91608 0.91343 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.11 3.07 7.16 -52.48 -0.38 2.70 16 9 N -0.55 -14.03 5.29 -10.96 -0.06 -14.09 16 10 C 0.44 10.63 7.86 -10.98 -0.09 10.54 16 11 O -0.58 -16.05 16.08 -14.11 -0.23 -16.28 16 12 C 0.06 1.21 5.94 36.01 0.21 1.42 16 13 O -0.33 -6.09 9.75 -45.88 -0.45 -6.53 16 14 C 0.46 7.46 8.03 36.00 0.29 7.75 16 15 O -0.49 -9.33 16.25 -25.48 -0.41 -9.75 16 16 C 0.07 0.86 6.53 36.00 0.24 1.10 16 17 O -0.37 -4.53 9.71 -55.18 -0.54 -5.06 16 18 C 0.07 0.59 4.98 37.16 0.19 0.78 16 19 C -0.09 -0.75 3.19 -89.50 -0.29 -1.03 16 20 C -0.12 -0.98 6.22 -25.03 -0.16 -1.14 16 21 C -0.13 -0.87 6.91 -24.70 -0.17 -1.05 16 22 C -0.13 -0.75 6.83 -25.08 -0.17 -0.92 16 23 C -0.12 -0.74 6.46 -25.61 -0.17 -0.90 16 24 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 25 H 0.40 9.51 7.90 -40.82 -0.32 9.19 16 26 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 27 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.41 8.02 -51.93 -0.42 -0.01 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.60 7.77 -51.93 -0.40 0.19 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.37 7.67 -51.93 -0.40 -0.03 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -33.09 343.65 -7.28 -40.37 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.12 Total: 5.27 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -0.35 Total: 8.59 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.67 Total: -37.47 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -1.62 Total: -37.62 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.09 -7.28 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838329142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.423 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds