Wall clock time and date at job start Tue Mar 31 2020 05:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30830 * 125.89321 * 2 1 4 4 N 1.40084 * 108.23819 * 180.25407 * 3 2 1 5 5 C 1.46497 * 126.03495 * 179.75528 * 4 3 2 6 6 C 1.34987 * 107.92541 * 359.71988 * 4 3 2 7 7 Cl 1.73595 * 126.14065 * 179.97438 * 6 4 3 8 8 C 1.35460 * 107.71603 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.04950 * 180.02562 * 8 6 4 10 10 N 1.46899 * 109.47107 * 90.02400 * 9 8 6 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47312 * 300.00123 * 12 11 10 14 14 C 1.52997 * 109.47169 * 60.00159 * 12 11 10 15 15 C 1.50698 * 109.47092 * 180.02562 * 12 11 10 16 16 H 1.08009 * 119.99873 * 0.02562 * 15 12 11 17 17 C 1.37879 * 120.00054 * 180.02562 * 15 12 11 18 18 N 1.31504 * 120.00303 * 359.97438 * 17 15 12 19 19 Si 1.86809 * 119.99645 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47255 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46940 * 120.00178 * 19 17 15 22 22 H 1.48500 * 109.46824 * 239.99764 * 19 17 15 23 23 H 1.09000 * 109.47348 * 270.21977 * 1 2 3 24 24 H 1.09003 * 109.46950 * 30.21097 * 1 2 3 25 25 H 1.08999 * 109.47619 * 150.21141 * 1 2 3 26 26 H 1.09001 * 109.46612 * 269.95763 * 5 4 3 27 27 H 1.08995 * 109.47202 * 29.95768 * 5 4 3 28 28 H 1.08997 * 109.46707 * 149.96202 * 5 4 3 29 29 H 1.09002 * 109.47152 * 330.02488 * 9 8 6 30 30 H 1.09001 * 109.46980 * 210.02588 * 9 8 6 31 31 H 1.00902 * 111.00582 * 303.95889 * 10 9 8 32 32 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 33 33 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 34 34 H 1.09002 * 109.47029 * 60.00405 * 13 12 11 35 35 H 1.09000 * 109.47152 * 180.02562 * 13 12 11 36 36 H 1.08993 * 109.47356 * 300.00089 * 13 12 11 37 37 H 1.09005 * 109.46874 * 60.00300 * 14 12 11 38 38 H 1.09000 * 109.47103 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.47446 * 299.99763 * 14 12 11 40 40 H 0.96998 * 120.00316 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0599 0.0000 4 7 3.6089 0.6350 -0.0059 5 6 4.7894 1.5025 -0.0129 6 6 3.6153 -0.7148 -0.0032 7 17 5.0220 -1.7320 -0.0088 8 6 2.3269 -1.1331 0.0048 9 6 1.8597 -2.5659 0.0109 10 7 1.7148 -3.0278 1.3978 11 6 1.2591 -4.4236 1.4430 12 6 1.1196 -4.8677 2.9004 13 6 2.4747 -4.7506 3.6012 14 6 0.0997 -3.9750 3.6102 15 6 0.6528 -6.2998 2.9467 16 1 0.4738 -6.8394 2.0284 17 6 0.4540 -6.9211 4.1614 18 7 0.6723 -6.2643 5.2796 19 14 -0.1240 -8.6966 4.2187 20 1 -0.2949 -9.2065 2.8345 21 1 0.8842 -9.5227 4.9302 22 1 -1.4215 -8.7718 4.9371 23 1 -0.3634 0.0039 1.0276 24 1 -0.3633 0.8881 -0.5171 25 1 -0.3634 -0.8918 -0.5105 26 1 5.0775 1.7155 -1.0424 27 1 4.5575 2.4358 0.5000 28 1 5.6114 1.0015 0.4982 29 1 2.5906 -3.1886 -0.5049 30 1 0.8983 -2.6367 -0.4980 31 1 2.5765 -2.9117 1.9096 32 1 0.2935 -4.5069 0.9442 33 1 1.9856 -5.0594 0.9369 34 1 2.8127 -3.7149 3.5677 35 1 2.3754 -5.0674 4.6394 36 1 3.2013 -5.3865 3.0956 37 1 -0.8657 -4.0585 3.1110 38 1 0.0000 -4.2917 4.6484 39 1 0.4377 -2.9393 3.5767 40 1 0.5329 -6.7016 6.1341 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839162881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:18 Heat of formation + Delta-G solvation = 64.051160 kcal Electronic energy + Delta-G solvation = -20702.803691 eV Core-core repulsion = 17580.052629 eV Total energy + Delta-G solvation = -3122.751062 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38025 -36.98899 -36.88338 -34.64927 -33.43372 -31.28150 -30.03242 -29.28289 -26.37432 -25.49941 -25.15346 -24.43652 -22.74164 -20.75318 -19.80445 -18.38567 -17.02091 -15.98181 -15.79188 -15.29960 -14.81213 -14.28462 -14.08440 -13.93048 -13.41016 -13.21521 -12.84305 -12.72277 -12.41550 -12.36631 -12.27653 -12.02070 -11.73625 -11.62279 -11.34030 -11.09497 -10.93849 -10.65402 -10.55046 -10.45216 -10.11382 -10.01645 -9.32236 -9.16329 -9.06241 -8.58276 -8.42481 -8.24491 -7.58547 -5.86742 -3.96872 1.39062 1.56788 2.53264 2.60265 3.33099 3.41500 3.45024 4.26952 4.48169 4.85615 4.89883 5.10454 5.13746 5.15233 5.16515 5.38774 5.55349 5.72711 5.84514 5.96896 6.00073 6.11551 6.41012 6.48367 6.56925 6.63542 6.78775 6.95649 7.14548 7.23434 7.45580 7.53129 7.54420 7.80810 7.81438 7.89629 8.05471 8.27102 8.40772 8.61378 9.05037 9.67980 11.13705 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026365 B = 0.003966 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.770618 B = 7058.539249 C = 7543.188025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.103 3.897 3 N -0.282 5.282 4 N -0.372 5.372 5 C 0.100 3.900 6 C 0.122 3.878 7 Cl -0.007 7.007 8 C -0.193 4.193 9 C 0.131 3.869 10 N -0.679 5.679 11 C 0.075 3.925 12 C 0.068 3.932 13 C -0.131 4.131 14 C -0.118 4.118 15 C -0.504 4.504 16 H 0.052 0.948 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.887 3.113 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.285 1.285 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.030 0.970 30 H 0.079 0.921 31 H 0.337 0.663 32 H 0.057 0.943 33 H 0.012 0.988 34 H 0.010 0.990 35 H 0.082 0.918 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.072 0.928 39 H 0.020 0.980 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.818 13.538 -11.057 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 N -0.105 5.105 4 N -0.157 5.157 5 C -0.041 4.041 6 C -0.032 4.032 7 Cl 0.021 6.979 8 C -0.206 4.206 9 C 0.001 3.999 10 N -0.311 5.311 11 C -0.053 4.053 12 C 0.068 3.932 13 C -0.189 4.189 14 C -0.175 4.175 15 C -0.543 4.543 16 H 0.071 0.929 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.715 3.285 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.212 1.212 23 H 0.104 0.896 24 H 0.088 0.912 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.155 0.845 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.029 0.971 35 H 0.101 0.899 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.091 0.909 39 H 0.039 0.961 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.487 15.027 -10.796 19.607 hybrid contribution 0.939 -2.381 -0.178 2.566 sum 7.426 12.646 -10.974 18.317 Atomic orbital electron populations 1.20209 0.85796 1.03027 1.03874 1.22149 0.97229 0.89341 0.97551 1.77455 0.84986 1.21792 1.26310 1.48402 1.06254 1.02647 1.58380 1.21884 0.83791 0.94973 1.03497 1.21499 0.90272 0.83858 1.07527 1.98407 1.38231 1.64206 1.97027 1.19689 0.89092 0.97622 1.14186 1.20191 0.99772 0.87885 0.92033 1.60648 1.36735 1.23230 1.10484 1.22159 0.97830 0.84809 1.00486 1.18092 0.92768 0.94142 0.88214 1.21822 0.97167 0.95683 1.04241 1.21621 0.97101 0.96121 1.02698 1.21160 1.44410 0.96568 0.92168 0.92948 1.24881 0.95447 0.97465 0.95790 1.69845 1.49451 1.35916 0.97144 0.86626 0.78322 0.85595 0.77936 1.19951 1.21247 1.21153 0.89588 0.91207 0.89972 0.90591 0.88816 0.89474 0.95153 0.90310 0.84451 0.92450 0.96926 0.97132 0.89923 0.96289 0.96303 0.90892 0.96091 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.26 36.01 0.37 -0.45 16 2 C 0.10 1.47 7.22 -82.41 -0.59 0.88 16 3 N -0.28 -4.08 12.57 33.67 0.42 -3.66 16 4 N -0.37 -4.80 4.01 -64.91 -0.26 -5.06 16 5 C 0.10 0.82 11.31 59.85 0.68 1.50 16 6 C 0.12 1.67 7.45 -17.16 -0.13 1.54 16 7 Cl -0.01 -0.08 28.34 -51.86 -1.47 -1.55 16 8 C -0.19 -2.85 5.62 -105.00 -0.59 -3.44 16 9 C 0.13 2.01 5.81 -4.98 -0.03 1.98 16 10 N -0.68 -12.31 5.70 -115.05 -0.66 -12.97 16 11 C 0.08 1.57 4.59 -3.82 -0.02 1.55 16 12 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 13 C -0.13 -3.14 7.92 37.16 0.29 -2.85 16 14 C -0.12 -2.88 8.09 37.16 0.30 -2.58 16 15 C -0.50 -13.57 8.01 -34.44 -0.28 -13.85 16 16 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 17 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 18 N -0.88 -24.60 9.35 55.43 0.52 -24.08 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.88 7.25 -51.93 -0.38 0.50 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 0.61 7.81 -51.93 -0.41 0.20 16 29 H 0.03 0.46 7.91 -51.93 -0.41 0.05 16 30 H 0.08 1.14 7.25 -51.93 -0.38 0.76 16 31 H 0.34 6.31 6.77 -39.29 -0.27 6.04 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 35 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 1.96 6.07 -51.93 -0.32 1.65 16 39 H 0.02 0.47 7.60 -51.93 -0.39 0.08 16 40 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 337.30 15.07 5.08 5.08 Total: -1.00 -29.41 337.30 -7.68 -37.09 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.12 Total: 1.49 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -0.17 Total: -12.46 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.03 Total: -45.77 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.47 Total: -1.55 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.41 -7.68 -37.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839162881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.140 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds