Wall clock time and date at job start Tue Mar 31 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30830 * 125.89321 * 2 1 4 4 N 1.40084 * 108.23819 * 180.25407 * 3 2 1 5 5 C 1.46497 * 126.03495 * 179.75528 * 4 3 2 6 6 C 1.34987 * 107.92541 * 359.71988 * 4 3 2 7 7 Cl 1.73595 * 126.14065 * 179.97438 * 6 4 3 8 8 C 1.35460 * 107.71603 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.04950 * 180.02562 * 8 6 4 10 10 N 1.46899 * 109.47107 * 90.02400 * 9 8 6 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47312 * 300.00123 * 12 11 10 14 14 C 1.52997 * 109.47169 * 60.00159 * 12 11 10 15 15 C 1.50698 * 109.47092 * 180.02562 * 12 11 10 16 16 H 1.08009 * 119.99873 * 0.02562 * 15 12 11 17 17 C 1.37879 * 120.00054 * 180.02562 * 15 12 11 18 18 N 1.31504 * 120.00303 * 359.97438 * 17 15 12 19 19 Si 1.86809 * 119.99645 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47255 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46940 * 120.00178 * 19 17 15 22 22 H 1.48500 * 109.46824 * 239.99764 * 19 17 15 23 23 H 1.09000 * 109.47348 * 270.21977 * 1 2 3 24 24 H 1.09003 * 109.46950 * 30.21097 * 1 2 3 25 25 H 1.08999 * 109.47619 * 150.21141 * 1 2 3 26 26 H 1.09001 * 109.46612 * 269.95763 * 5 4 3 27 27 H 1.08995 * 109.47202 * 29.95768 * 5 4 3 28 28 H 1.08997 * 109.46707 * 149.96202 * 5 4 3 29 29 H 1.09002 * 109.47152 * 330.02488 * 9 8 6 30 30 H 1.09001 * 109.46980 * 210.02588 * 9 8 6 31 31 H 1.00902 * 111.00582 * 303.95889 * 10 9 8 32 32 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 33 33 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 34 34 H 1.09002 * 109.47029 * 60.00405 * 13 12 11 35 35 H 1.09000 * 109.47152 * 180.02562 * 13 12 11 36 36 H 1.08993 * 109.47356 * 300.00089 * 13 12 11 37 37 H 1.09005 * 109.46874 * 60.00300 * 14 12 11 38 38 H 1.09000 * 109.47103 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.47446 * 299.99763 * 14 12 11 40 40 H 0.96998 * 120.00316 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0599 0.0000 4 7 3.6089 0.6350 -0.0059 5 6 4.7894 1.5025 -0.0129 6 6 3.6153 -0.7148 -0.0032 7 17 5.0220 -1.7320 -0.0088 8 6 2.3269 -1.1331 0.0048 9 6 1.8597 -2.5659 0.0109 10 7 1.7148 -3.0278 1.3978 11 6 1.2591 -4.4236 1.4430 12 6 1.1196 -4.8677 2.9004 13 6 2.4747 -4.7506 3.6012 14 6 0.0997 -3.9750 3.6102 15 6 0.6528 -6.2998 2.9467 16 1 0.4738 -6.8394 2.0284 17 6 0.4540 -6.9211 4.1614 18 7 0.6723 -6.2643 5.2796 19 14 -0.1240 -8.6966 4.2187 20 1 -0.2949 -9.2065 2.8345 21 1 0.8842 -9.5227 4.9302 22 1 -1.4215 -8.7718 4.9371 23 1 -0.3634 0.0039 1.0276 24 1 -0.3633 0.8881 -0.5171 25 1 -0.3634 -0.8918 -0.5105 26 1 5.0775 1.7155 -1.0424 27 1 4.5575 2.4358 0.5000 28 1 5.6114 1.0015 0.4982 29 1 2.5906 -3.1886 -0.5049 30 1 0.8983 -2.6367 -0.4980 31 1 2.5765 -2.9117 1.9096 32 1 0.2935 -4.5069 0.9442 33 1 1.9856 -5.0594 0.9369 34 1 2.8127 -3.7149 3.5677 35 1 2.3754 -5.0674 4.6394 36 1 3.2013 -5.3865 3.0956 37 1 -0.8657 -4.0585 3.1110 38 1 0.0000 -4.2917 4.6484 39 1 0.4377 -2.9393 3.5767 40 1 0.5329 -6.7016 6.1341 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839162881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:17 Heat of formation + Delta-G solvation = 46.866924 kcal Electronic energy + Delta-G solvation = -20703.548856 eV Core-core repulsion = 17580.052629 eV Total energy + Delta-G solvation = -3123.496227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.39114 -38.60510 -37.95734 -36.01502 -34.68791 -33.02258 -31.17474 -30.33516 -27.52420 -27.45701 -27.17782 -25.67889 -24.17215 -21.79627 -20.85119 -20.25423 -18.10462 -17.72041 -16.90954 -16.80880 -16.35412 -15.64681 -15.38853 -15.29712 -14.53190 -14.35860 -14.11437 -14.01372 -13.76798 -13.56947 -13.52755 -13.18384 -13.05992 -12.97302 -12.67509 -12.64600 -12.55522 -12.45759 -12.25741 -12.07178 -12.01795 -11.58545 -11.24676 -10.91154 -10.54062 -10.30548 -10.14745 -9.52958 -9.03640 -7.92253 -6.08802 0.38550 0.54561 1.43783 1.47269 1.52582 1.56701 1.67191 2.50169 3.30043 3.36313 3.71808 3.99966 4.03388 4.28722 4.32634 4.43848 4.58028 4.63743 4.69175 4.77152 4.87787 4.92142 4.95391 5.05377 5.07283 5.11109 5.23756 5.34852 5.50023 5.57302 5.60041 5.72085 5.74861 5.82147 6.23510 6.31294 6.39748 6.51427 6.54526 6.67854 7.01463 7.58759 9.05994 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026365 B = 0.003966 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.770618 B = 7058.539249 C = 7543.188025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.094 3.906 3 N -0.300 5.300 4 N -0.370 5.370 5 C 0.088 3.912 6 C 0.120 3.880 7 Cl 0.006 6.994 8 C -0.215 4.215 9 C 0.138 3.862 10 N -0.679 5.679 11 C 0.090 3.910 12 C 0.059 3.941 13 C -0.119 4.119 14 C -0.103 4.103 15 C -0.522 4.522 16 H 0.047 0.953 17 C 0.022 3.978 18 N -0.904 5.904 19 Si 0.943 3.057 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.284 1.284 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.033 0.967 30 H 0.087 0.913 31 H 0.333 0.667 32 H 0.056 0.944 33 H 0.009 0.991 34 H 0.028 0.972 35 H 0.054 0.946 36 H 0.016 0.984 37 H 0.013 0.987 38 H 0.045 0.955 39 H 0.031 0.969 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.305 14.071 -12.069 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 N -0.125 5.125 4 N -0.155 5.155 5 C -0.051 4.051 6 C -0.034 4.034 7 Cl 0.034 6.966 8 C -0.228 4.228 9 C 0.008 3.992 10 N -0.310 5.310 11 C -0.038 4.038 12 C 0.058 3.942 13 C -0.177 4.177 14 C -0.161 4.161 15 C -0.561 4.561 16 H 0.065 0.935 17 C -0.177 4.177 18 N -0.544 5.544 19 Si 0.770 3.230 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.210 1.210 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.105 0.895 31 H 0.152 0.848 32 H 0.074 0.926 33 H 0.027 0.973 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.982 15.581 -11.821 20.767 hybrid contribution 0.868 -2.482 0.120 2.632 sum 7.850 13.100 -11.701 19.239 Atomic orbital electron populations 1.20270 0.84474 1.04167 1.03843 1.22509 0.98278 0.89120 0.97267 1.77411 0.85839 1.22219 1.27029 1.48765 1.06762 1.02836 1.57099 1.22269 0.82673 0.94990 1.05194 1.21627 0.90551 0.84527 1.06744 1.98410 1.37417 1.63879 1.96932 1.19675 0.89801 0.97279 1.16067 1.20139 1.00408 0.88412 0.90212 1.60588 1.36614 1.21296 1.12509 1.21831 0.97845 0.86277 0.97895 1.18151 0.92543 0.93051 0.90425 1.21648 0.97145 0.96623 1.02289 1.21437 0.97073 0.96689 1.00861 1.21475 1.44551 0.98041 0.91996 0.93501 1.25527 0.95732 1.00807 0.95632 1.69980 1.49940 1.37081 0.97385 0.85740 0.77730 0.81588 0.77917 1.19504 1.21106 1.21033 0.90077 0.89685 0.89266 0.88664 0.87687 0.88126 0.94872 0.89488 0.84848 0.92574 0.97280 0.95310 0.92714 0.96476 0.96734 0.93613 0.94968 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.26 71.24 0.73 -0.77 16 2 C 0.09 2.54 7.22 43.10 0.31 2.86 16 3 N -0.30 -8.28 12.57 -47.39 -0.60 -8.87 16 4 N -0.37 -8.87 4.01 -359.28 -1.44 -10.31 16 5 C 0.09 1.25 11.31 127.77 1.44 2.70 16 6 C 0.12 3.10 7.45 83.57 0.62 3.73 16 7 Cl 0.01 0.13 28.34 -2.72 -0.08 0.05 16 8 C -0.22 -6.04 5.62 -20.11 -0.11 -6.15 16 9 C 0.14 4.02 5.81 85.56 0.50 4.51 16 10 N -0.68 -23.71 5.70 -517.92 -2.95 -26.66 16 11 C 0.09 3.67 4.59 86.30 0.40 4.07 16 12 C 0.06 2.83 0.57 -52.93 -0.03 2.80 16 13 C -0.12 -5.67 7.92 71.98 0.57 -5.10 16 14 C -0.10 -5.01 8.09 71.98 0.58 -4.42 16 15 C -0.52 -28.01 8.01 25.60 0.21 -27.81 16 16 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 17 C 0.02 1.18 5.15 84.66 0.44 1.62 16 18 N -0.90 -50.68 9.35 21.45 0.20 -50.48 16 19 Si 0.94 43.31 29.54 68.60 2.03 45.34 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 23 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.09 1.78 7.25 -2.39 -0.02 1.76 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 1.16 7.81 -2.39 -0.02 1.14 16 29 H 0.03 0.95 7.91 -2.39 -0.02 0.93 16 30 H 0.09 2.37 7.25 -2.39 -0.02 2.36 16 31 H 0.33 12.01 6.77 -89.69 -0.61 11.41 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.03 1.22 6.57 -2.39 -0.02 1.20 16 35 H 0.05 2.92 6.07 -2.39 -0.01 2.90 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.04 2.47 6.07 -2.39 -0.01 2.45 16 39 H 0.03 1.44 7.60 -2.39 -0.02 1.43 16 40 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -61.36 337.30 3.24 -58.11 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.43 Total: 14.81 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 5.65 Total: -21.98 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -4.79 Total: -96.33 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -0.08 Total: 0.05 kcal Total: -61.36 3.24 -58.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839162881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.980 kcal (2) G-P(sol) polarization free energy of solvation -61.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds