Wall clock time and date at job start Tue Mar 31 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47266 * 2 1 4 4 C 1.53001 * 109.46692 * 240.00729 * 2 1 3 5 5 O 1.45194 * 109.47781 * 120.00316 * 2 1 3 6 6 C 1.34542 * 116.99659 * 59.99828 * 5 2 1 7 7 O 1.21250 * 120.00258 * 359.97438 * 6 5 2 8 8 C 1.49440 * 119.99835 * 180.02562 * 6 5 2 9 9 O 1.21349 * 119.99739 * 359.97438 * 8 6 5 10 10 N 1.34772 * 119.99947 * 180.02562 * 8 6 5 11 11 C 1.47021 * 125.64937 * 359.94871 * 10 8 6 12 12 C 1.54370 * 107.28813 * 181.13182 * 11 10 8 13 13 C 1.55147 * 102.92092 * 22.14333 * 12 11 10 14 14 O 1.42905 * 111.00578 * 82.63751 * 13 12 11 15 15 C 1.50702 * 111.00308 * 206.45025 * 13 12 11 16 16 H 1.08002 * 120.00299 * 356.82421 * 15 13 12 17 17 C 1.37884 * 119.99942 * 176.53980 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47423 * 125.64837 * 179.97438 * 10 8 6 24 24 H 1.09007 * 109.46526 * 299.99395 * 1 2 3 25 25 H 1.08993 * 109.47488 * 59.99503 * 1 2 3 26 26 H 1.08997 * 109.46958 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47100 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46986 * 300.01108 * 3 2 1 29 29 H 1.08996 * 109.46833 * 60.00354 * 3 2 1 30 30 H 1.09001 * 109.47227 * 299.99706 * 4 2 1 31 31 H 1.09003 * 109.47325 * 59.99678 * 4 2 1 32 32 H 1.09008 * 109.47244 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.88518 * 300.52094 * 11 10 8 34 34 H 1.09002 * 109.88165 * 61.68403 * 11 10 8 35 35 H 1.09001 * 110.70699 * 263.79361 * 12 11 10 36 36 H 1.09008 * 110.75075 * 140.51110 * 12 11 10 37 37 H 0.96701 * 113.99475 * 183.17547 * 14 13 12 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.08996 * 110.36708 * 36.99367 * 23 10 8 40 40 H 1.08999 * 110.36888 * 274.67114 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 8 2.0141 -0.6845 1.1854 6 6 1.6526 -1.9714 1.3380 7 8 0.9527 -2.5074 0.5055 8 6 2.1129 -2.7400 2.5341 9 8 2.8130 -2.2035 3.3675 10 7 1.7512 -4.0293 2.6867 11 6 0.9104 -4.7991 1.7582 12 6 0.7421 -6.2124 2.3559 13 6 1.0294 -5.9878 3.8639 14 8 -0.1333 -5.5061 4.5408 15 6 1.5432 -7.2488 4.5096 16 1 1.6157 -8.1596 3.9336 17 6 1.9263 -7.2385 5.8341 18 7 1.8381 -6.1295 6.5354 19 14 2.5703 -8.7997 6.6322 20 1 3.7844 -9.2597 5.9113 21 1 2.9109 -8.5259 8.0515 22 1 1.5273 -9.8549 6.5686 23 6 2.1327 -4.9012 3.8126 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6765 -1.7488 -1.2495 31 1 1.6764 -0.2072 -2.1393 32 1 3.1299 -0.7208 -1.2497 33 1 -0.0641 -4.3213 1.6575 34 1 1.3963 -4.8634 0.7846 35 1 1.4668 -6.9024 1.9238 36 1 -0.2747 -6.5761 2.2070 37 1 0.0109 -5.3049 5.4756 38 1 2.1072 -6.1223 7.4674 39 1 2.1497 -4.3337 4.7430 40 1 3.1055 -5.3565 3.6271 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843309168.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:34 Heat of formation + Delta-G solvation = -163.303090 kcal Electronic energy + Delta-G solvation = -23770.869658 eV Core-core repulsion = 20165.257860 eV Total energy + Delta-G solvation = -3605.611798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01388 -39.24218 -37.29707 -36.99183 -34.42153 -33.97802 -32.25014 -30.32460 -28.03733 -27.56824 -27.55267 -26.28128 -24.46815 -22.51764 -20.57415 -19.72616 -19.22983 -17.33414 -17.14727 -16.89524 -16.31249 -15.87902 -15.21789 -14.96876 -14.68123 -14.39902 -14.25006 -13.76189 -13.17559 -13.13116 -12.91056 -12.65878 -12.42344 -12.32343 -12.13091 -12.05766 -11.73655 -11.64094 -11.57516 -11.47035 -11.06928 -10.86994 -10.72593 -10.64715 -10.53168 -10.48907 -10.25237 -9.44872 -9.34365 -8.74044 -8.48778 -7.99426 -6.33958 -4.43813 1.45227 2.13706 3.19794 3.25950 3.27525 3.37889 3.82381 4.22751 4.49095 4.57326 4.59267 4.73575 4.93531 5.30558 5.36184 5.39964 5.50233 5.53029 5.64140 5.66493 5.71283 5.77303 5.82597 5.97988 6.08368 6.11407 6.14960 6.36907 6.44177 6.66731 6.69998 6.76976 7.11608 7.24449 7.51289 7.68493 7.88219 7.93845 8.32773 8.60013 9.25067 9.35397 10.73434 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.037599 B = 0.004009 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.521794 B = 6982.561140 C = 7251.896643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.111 3.889 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.325 6.325 6 C 0.464 3.536 7 O -0.480 6.480 8 C 0.530 3.470 9 O -0.509 6.509 10 N -0.572 5.572 11 C 0.108 3.892 12 C -0.120 4.120 13 C 0.250 3.750 14 O -0.582 6.582 15 C -0.539 4.539 16 H 0.069 0.931 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.906 3.094 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.092 3.908 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.384 0.616 38 H 0.272 0.728 39 H 0.091 0.909 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 9.498 -12.435 15.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.075 3.925 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.240 6.240 6 C 0.302 3.698 7 O -0.367 6.367 8 C 0.311 3.689 9 O -0.386 6.386 10 N -0.307 5.307 11 C -0.015 4.015 12 C -0.158 4.158 13 C 0.209 3.791 14 O -0.391 6.391 15 C -0.577 4.577 16 H 0.087 0.913 17 C -0.132 4.132 18 N -0.533 5.533 19 Si 0.733 3.267 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.028 4.028 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.235 0.765 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.946 9.743 -12.691 16.028 hybrid contribution 0.577 -0.605 0.849 1.191 sum -0.369 9.138 -11.843 14.963 Atomic orbital electron populations 1.22499 0.93806 1.04917 1.02862 1.22322 0.94662 0.92509 0.83016 1.21840 1.02395 0.92354 1.03067 1.22498 1.01861 1.03161 0.96503 1.86708 1.68769 1.23826 1.44688 1.23722 0.77871 0.81451 0.86753 1.90682 1.33603 1.69779 1.42613 1.18459 0.83149 0.81939 0.85335 1.90780 1.37182 1.67960 1.42663 1.48638 1.47891 1.08499 1.25645 1.22217 0.94629 0.92804 0.91838 1.22714 1.02370 0.93960 0.96786 1.19625 0.81911 0.89793 0.87787 1.86109 1.36666 1.87759 1.28553 1.21436 1.44262 0.95810 0.96216 0.91323 1.25094 0.94092 0.96871 0.97145 1.69636 1.47373 1.26496 1.09774 0.86421 0.79370 0.82691 0.78205 1.19963 1.21045 1.19946 1.23602 1.00329 0.91454 0.87397 0.91770 0.90926 0.89713 0.91324 0.90301 0.91276 0.89752 0.90924 0.91843 0.91089 0.91652 0.90244 0.90367 0.76502 0.91753 0.89103 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 8.37 37.16 0.31 -1.74 16 2 C 0.11 1.32 1.13 -90.62 -0.10 1.22 16 3 C -0.14 -1.27 8.85 37.16 0.33 -0.94 16 4 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 5 O -0.32 -5.19 9.75 -45.10 -0.44 -5.63 16 6 C 0.46 8.12 7.30 35.40 0.26 8.38 16 7 O -0.48 -8.03 9.66 -19.07 -0.18 -8.21 16 8 C 0.53 10.96 7.91 -11.59 -0.09 10.87 16 9 O -0.51 -11.92 17.22 -7.73 -0.13 -12.05 16 10 N -0.57 -11.95 3.33 -170.99 -0.57 -12.52 16 11 C 0.11 1.99 5.49 -3.04 -0.02 1.97 16 12 C -0.12 -2.37 6.13 -24.88 -0.15 -2.52 16 13 C 0.25 5.90 0.88 -89.61 -0.08 5.82 16 14 O -0.58 -14.57 13.17 -35.23 -0.46 -15.03 16 15 C -0.54 -13.62 8.26 -34.44 -0.28 -13.90 16 16 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 17 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 18 N -0.89 -23.22 10.69 55.43 0.59 -22.62 16 19 Si 0.91 19.87 29.54 -169.99 -5.02 14.84 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 C 0.09 2.15 5.50 -2.52 -0.01 2.14 16 24 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 1.11 5.88 -51.93 -0.31 0.80 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.07 5.88 -51.93 -0.31 0.76 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 33 H 0.07 1.30 7.58 -51.93 -0.39 0.91 16 34 H 0.07 1.08 7.70 -51.93 -0.40 0.68 16 35 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 36 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 37 H 0.38 9.87 7.26 45.56 0.33 10.21 16 38 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.09 2.36 7.47 -51.93 -0.39 1.97 16 40 H 0.07 1.66 8.03 -51.93 -0.42 1.25 16 LS Contribution 327.22 15.07 4.93 4.93 Total: -1.00 -27.98 327.22 -6.13 -34.11 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -5.22 Total: 10.83 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 0.38 Total: 11.35 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.02 Total: -35.14 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.22 Total: -40.93 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.98 -6.13 -34.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843309168.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.189 kcal (2) G-P(sol) polarization free energy of solvation -27.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds