Wall clock time and date at job start Tue Mar 31 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47266 * 2 1 4 4 C 1.53001 * 109.46692 * 240.00729 * 2 1 3 5 5 O 1.45194 * 109.47781 * 120.00316 * 2 1 3 6 6 C 1.34542 * 116.99659 * 59.99828 * 5 2 1 7 7 O 1.21250 * 120.00258 * 359.97438 * 6 5 2 8 8 C 1.49440 * 119.99835 * 180.02562 * 6 5 2 9 9 O 1.21349 * 119.99739 * 359.97438 * 8 6 5 10 10 N 1.34772 * 119.99947 * 180.02562 * 8 6 5 11 11 C 1.47021 * 125.64937 * 359.94871 * 10 8 6 12 12 C 1.54370 * 107.28813 * 181.13182 * 11 10 8 13 13 C 1.55147 * 102.92092 * 22.14333 * 12 11 10 14 14 O 1.42905 * 111.00578 * 82.63751 * 13 12 11 15 15 C 1.50702 * 111.00308 * 206.45025 * 13 12 11 16 16 H 1.08002 * 120.00299 * 356.82421 * 15 13 12 17 17 C 1.37884 * 119.99942 * 176.53980 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47423 * 125.64837 * 179.97438 * 10 8 6 24 24 H 1.09007 * 109.46526 * 299.99395 * 1 2 3 25 25 H 1.08993 * 109.47488 * 59.99503 * 1 2 3 26 26 H 1.08997 * 109.46958 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47100 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46986 * 300.01108 * 3 2 1 29 29 H 1.08996 * 109.46833 * 60.00354 * 3 2 1 30 30 H 1.09001 * 109.47227 * 299.99706 * 4 2 1 31 31 H 1.09003 * 109.47325 * 59.99678 * 4 2 1 32 32 H 1.09008 * 109.47244 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.88518 * 300.52094 * 11 10 8 34 34 H 1.09002 * 109.88165 * 61.68403 * 11 10 8 35 35 H 1.09001 * 110.70699 * 263.79361 * 12 11 10 36 36 H 1.09008 * 110.75075 * 140.51110 * 12 11 10 37 37 H 0.96701 * 113.99475 * 183.17547 * 14 13 12 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.08996 * 110.36708 * 36.99367 * 23 10 8 40 40 H 1.08999 * 110.36888 * 274.67114 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 8 2.0141 -0.6845 1.1854 6 6 1.6526 -1.9714 1.3380 7 8 0.9527 -2.5074 0.5055 8 6 2.1129 -2.7400 2.5341 9 8 2.8130 -2.2035 3.3675 10 7 1.7512 -4.0293 2.6867 11 6 0.9104 -4.7991 1.7582 12 6 0.7421 -6.2124 2.3559 13 6 1.0294 -5.9878 3.8639 14 8 -0.1333 -5.5061 4.5408 15 6 1.5432 -7.2488 4.5096 16 1 1.6157 -8.1596 3.9336 17 6 1.9263 -7.2385 5.8341 18 7 1.8381 -6.1295 6.5354 19 14 2.5703 -8.7997 6.6322 20 1 3.7844 -9.2597 5.9113 21 1 2.9109 -8.5259 8.0515 22 1 1.5273 -9.8549 6.5686 23 6 2.1327 -4.9012 3.8126 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6765 -1.7488 -1.2495 31 1 1.6764 -0.2072 -2.1393 32 1 3.1299 -0.7208 -1.2497 33 1 -0.0641 -4.3213 1.6575 34 1 1.3963 -4.8634 0.7846 35 1 1.4668 -6.9024 1.9238 36 1 -0.2747 -6.5761 2.2070 37 1 0.0109 -5.3049 5.4756 38 1 2.1072 -6.1223 7.4674 39 1 2.1497 -4.3337 4.7430 40 1 3.1055 -5.3565 3.6271 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843309168.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:34 Heat of formation + Delta-G solvation = -181.623994 kcal Electronic energy + Delta-G solvation = -23771.664112 eV Core-core repulsion = 20165.257860 eV Total energy + Delta-G solvation = -3606.406252 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.35151 -40.81452 -39.05081 -38.25122 -36.14867 -35.08285 -34.20988 -32.03893 -29.78408 -28.39948 -28.33387 -27.99356 -26.13065 -24.06879 -21.87932 -21.47740 -20.58051 -19.19023 -18.69180 -18.20407 -17.71942 -17.26230 -17.07209 -16.42628 -16.28329 -15.89141 -15.38148 -14.94965 -14.77756 -14.71283 -14.61186 -14.05271 -13.57271 -13.49455 -13.34369 -13.14449 -12.99871 -12.93819 -12.87867 -12.81850 -12.56326 -12.53885 -12.34570 -12.27611 -12.12592 -11.87680 -11.50806 -11.24714 -10.85488 -10.63462 -10.38647 -9.74355 -8.26175 -6.43155 -0.02726 0.75010 1.46150 1.47070 1.54855 1.82953 2.34205 2.43521 3.00008 3.17547 3.66602 3.73588 3.74411 3.89871 4.04103 4.10850 4.28773 4.48472 4.60131 4.61080 4.66907 4.73078 4.74145 4.82913 4.84807 4.90931 5.03051 5.04277 5.11444 5.17638 5.24234 5.30107 5.33201 5.42155 5.74134 5.99729 6.09204 6.31718 6.64922 6.72727 7.27399 7.35285 8.79563 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.037599 B = 0.004009 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.521794 B = 6982.561140 C = 7251.896643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.096 3.904 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.336 6.336 6 C 0.475 3.525 7 O -0.470 6.470 8 C 0.522 3.478 9 O -0.546 6.546 10 N -0.576 5.576 11 C 0.113 3.887 12 C -0.113 4.113 13 C 0.233 3.767 14 O -0.588 6.588 15 C -0.557 4.557 16 H 0.073 0.927 17 C 0.028 3.972 18 N -0.916 5.916 19 Si 0.966 3.034 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.270 1.270 23 C 0.104 3.896 24 H 0.060 0.940 25 H 0.103 0.897 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.377 0.623 38 H 0.271 0.729 39 H 0.056 0.944 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.157 9.792 -14.616 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.062 3.938 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.252 6.252 6 C 0.313 3.687 7 O -0.357 6.357 8 C 0.306 3.694 9 O -0.425 6.425 10 N -0.310 5.310 11 C -0.009 4.009 12 C -0.151 4.151 13 C 0.193 3.807 14 O -0.397 6.397 15 C -0.595 4.595 16 H 0.091 0.909 17 C -0.173 4.173 18 N -0.555 5.555 19 Si 0.791 3.209 20 H -0.194 1.194 21 H -0.212 1.212 22 H -0.195 1.195 23 C -0.017 4.017 24 H 0.079 0.921 25 H 0.122 0.878 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.226 0.774 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.229 10.038 -14.918 18.023 hybrid contribution 0.643 -0.615 1.482 1.728 sum -0.586 9.423 -13.436 16.422 Atomic orbital electron populations 1.22490 0.93148 1.03911 1.04272 1.22881 0.95418 0.93649 0.81890 1.21906 1.02446 0.90416 1.04535 1.22483 1.01899 1.02214 0.97073 1.86690 1.68880 1.22679 1.46938 1.22782 0.78196 0.82144 0.85624 1.90688 1.33154 1.69937 1.41916 1.19055 0.82425 0.81857 0.86103 1.90748 1.38727 1.68739 1.44314 1.48671 1.48085 1.08844 1.25375 1.22314 0.94673 0.91709 0.92164 1.22729 1.03497 0.95098 0.93774 1.19873 0.81596 0.89289 0.89944 1.86101 1.37574 1.87881 1.28109 1.21759 1.44412 0.96570 0.96724 0.90882 1.25820 0.94293 0.99419 0.97740 1.69751 1.47946 1.28040 1.09811 0.85485 0.78898 0.79414 0.77107 1.19381 1.21196 1.19545 1.23212 1.00114 0.91428 0.86969 0.92117 0.87799 0.91822 0.91356 0.87023 0.91576 0.91693 0.87878 0.91806 0.90750 0.89052 0.88620 0.89355 0.77368 0.91928 0.92522 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.62 8.37 71.98 0.60 -3.01 16 2 C 0.10 2.09 1.13 -10.79 -0.01 2.08 16 3 C -0.14 -2.10 8.85 71.98 0.64 -1.46 16 4 C -0.18 -3.41 8.37 71.98 0.60 -2.80 16 5 O -0.34 -10.50 9.75 -49.69 -0.48 -10.99 16 6 C 0.47 16.38 7.30 70.84 0.52 16.90 16 7 O -0.47 -15.10 9.66 20.64 0.20 -14.90 16 8 C 0.52 21.91 7.91 87.27 0.69 22.60 16 9 O -0.55 -26.42 17.22 9.40 0.16 -26.25 16 10 N -0.58 -24.18 3.33 -813.25 -2.70 -26.88 16 11 C 0.11 4.01 5.49 86.75 0.48 4.49 16 12 C -0.11 -4.29 6.13 31.80 0.19 -4.10 16 13 C 0.23 11.09 0.88 -10.14 -0.01 11.08 16 14 O -0.59 -29.96 13.17 -148.98 -1.96 -31.92 16 15 C -0.56 -28.12 8.26 25.60 0.21 -27.90 16 16 H 0.07 3.54 7.78 -2.91 -0.02 3.52 16 17 C 0.03 1.45 5.29 84.66 0.45 1.89 16 18 N -0.92 -48.70 10.69 21.45 0.23 -48.47 16 19 Si 0.97 40.70 29.54 68.60 2.03 42.72 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 C 0.10 4.99 5.50 86.86 0.48 5.47 16 24 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.56 5.88 -2.39 -0.01 1.54 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.50 5.88 -2.39 -0.01 1.49 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.07 2.61 7.58 -2.39 -0.02 2.59 16 34 H 0.09 2.80 7.70 -2.39 -0.02 2.78 16 35 H 0.10 3.30 8.03 -2.39 -0.02 3.28 16 36 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 37 H 0.38 20.05 7.26 -74.06 -0.54 19.52 16 38 H 0.27 13.88 8.31 -92.70 -0.77 13.11 16 39 H 0.06 3.08 7.47 -2.39 -0.02 3.06 16 40 H 0.06 3.05 8.03 -2.39 -0.02 3.03 16 Total: -1.00 -61.15 327.22 2.82 -58.33 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 0.51 Total: 33.14 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: 4.84 Total: 25.22 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -2.48 Total: -75.35 kcal Atomic # 8 Polarization: -81.97 SS G_CDS: -2.09 Total: -84.06 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Total: -61.15 2.82 -58.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843309168.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.294 kcal (2) G-P(sol) polarization free energy of solvation -61.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds