Wall clock time and date at job start Tue Mar 31 2020 05:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99553 * 2 1 4 4 H 1.48501 * 109.46985 * 90.00212 * 3 2 1 5 5 H 1.48507 * 109.46751 * 210.00145 * 3 2 1 6 6 H 1.48499 * 109.47222 * 329.99834 * 3 2 1 7 7 C 1.38805 * 120.00621 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00373 * 201.85921 * 7 2 1 9 9 N 1.36941 * 119.99684 * 21.85227 * 7 2 1 10 10 C 1.46497 * 119.99929 * 34.58696 * 9 7 2 11 11 N 1.46505 * 109.47160 * 90.00091 * 10 9 7 12 12 C 1.34611 * 125.86091 * 94.99618 * 11 10 9 13 13 C 1.36616 * 107.60987 * 179.97438 * 12 11 10 14 14 C 1.48199 * 126.25770 * 180.02562 * 13 12 11 15 15 C 1.39838 * 120.55826 * 180.02562 * 14 13 12 16 16 C 1.38210 * 118.29897 * 180.02562 * 15 14 13 17 17 N 1.32507 * 119.19991 * 359.97438 * 16 15 14 18 18 C 1.31797 * 121.07182 * 0.02562 * 17 16 15 19 19 N 1.31704 * 121.87552 * 359.71049 * 18 17 16 20 20 C 1.40974 * 107.48604 * 0.02562 * 13 12 11 21 21 N 1.30610 * 108.05182 * 359.73736 * 20 13 12 22 22 C 1.46494 * 120.00034 * 214.58715 * 9 7 2 23 23 C 1.52996 * 117.50108 * 14.00216 * 22 9 7 24 24 C 1.53002 * 60.00155 * 252.50641 * 23 22 9 25 25 H 0.97008 * 120.00426 * 359.49137 * 1 2 3 26 26 H 1.08995 * 109.47336 * 209.99785 * 10 9 7 27 27 H 1.09005 * 109.47266 * 330.00521 * 10 9 7 28 28 H 1.08002 * 126.19654 * 359.96401 * 12 11 10 29 29 H 1.08001 * 120.85538 * 359.97438 * 15 14 13 30 30 H 1.07998 * 120.39986 * 180.02562 * 16 15 14 31 31 H 1.07994 * 119.06818 * 179.97438 * 18 17 16 32 32 H 1.07999 * 125.97299 * 180.02562 * 20 13 12 33 33 H 1.09007 * 115.55095 * 159.70695 * 22 9 7 34 34 H 1.09003 * 117.49923 * 359.97438 * 23 22 9 35 35 H 1.09003 * 117.50057 * 145.01654 * 23 22 9 36 36 H 1.08992 * 117.50000 * 252.50780 * 24 23 22 37 37 H 1.08997 * 117.51251 * 107.47369 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 1.4001 5 1 3.5477 1.4403 -0.7001 6 1 1.4475 2.6527 -0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0320 -1.2354 0.3488 9 7 1.3995 -2.3456 -0.4404 10 6 0.4328 -2.2826 -1.5393 11 7 1.1317 -2.4565 -2.8151 12 6 1.2797 -3.6167 -3.4816 13 6 1.9877 -3.3522 -4.6196 14 6 2.3827 -4.3365 -5.6547 15 6 3.1111 -3.9331 -6.7782 16 6 3.4543 -4.8899 -7.7147 17 7 3.0856 -6.1475 -7.5191 18 6 2.3992 -6.4966 -6.4495 19 7 2.0542 -5.6210 -5.5281 20 6 2.2739 -1.9719 -4.6293 21 7 1.7558 -1.4435 -3.5530 22 6 1.7127 -3.6319 0.1869 23 6 2.4617 -3.6037 1.5206 24 6 3.1835 -4.0490 0.2472 25 1 -0.4851 0.8400 0.0075 26 1 -0.3062 -3.0748 -1.4191 27 1 -0.0675 -1.3142 -1.5282 28 1 0.9064 -4.5818 -3.1724 29 1 3.3975 -2.9003 -6.9111 30 1 4.0170 -4.6159 -8.5949 31 1 2.1152 -7.5308 -6.3228 32 1 2.8213 -1.4429 -5.3954 33 1 0.9720 -4.4184 0.0418 34 1 2.7219 -2.6281 1.9312 35 1 2.2138 -4.3717 2.2534 36 1 3.4105 -5.1098 0.1421 37 1 3.9180 -3.3664 -0.1802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848477714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:05 Heat of formation + Delta-G solvation = 177.604698 kcal Electronic energy + Delta-G solvation = -21721.552138 eV Core-core repulsion = 18502.617633 eV Total energy + Delta-G solvation = -3218.934505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.94158 -40.13816 -37.26446 -34.19581 -33.62472 -32.42816 -31.62394 -29.98891 -29.05004 -25.89389 -24.40033 -24.13685 -23.24419 -21.55914 -20.51693 -20.25131 -19.91476 -17.64011 -16.92233 -16.69632 -15.73344 -15.56234 -15.28940 -14.81605 -14.59497 -14.03941 -14.02520 -13.69078 -13.54335 -13.08126 -12.82229 -12.35427 -12.07842 -11.38198 -11.11876 -10.95810 -10.79891 -10.76287 -10.74701 -10.71613 -10.24935 -10.05585 -9.90317 -9.78009 -9.58646 -9.09502 -8.88535 -8.66716 -7.75607 -7.02738 -6.16684 -3.69613 0.98413 1.14713 2.61592 3.20560 3.25801 3.34080 3.35319 3.40343 4.16107 4.22102 4.26146 4.29798 4.61239 4.73285 4.93924 5.12543 5.16185 5.24832 5.37034 5.41112 5.60682 5.65307 5.72639 5.86802 5.94884 5.99617 6.24141 6.31818 6.32365 6.38953 6.57278 6.76284 6.89938 6.97601 7.11112 7.21586 7.56892 7.72213 8.11942 8.25660 8.40875 8.78145 9.42526 9.90439 10.88657 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.004676 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.668140 B = 5987.200756 C = 6755.943360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.029 3.971 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.285 1.285 7 C -0.269 4.269 8 H 0.067 0.933 9 N -0.527 5.527 10 C 0.341 3.659 11 N -0.336 5.336 12 C 0.113 3.887 13 C -0.251 4.251 14 C 0.287 3.713 15 C -0.236 4.236 16 C 0.146 3.854 17 N -0.549 5.549 18 C 0.299 3.701 19 N -0.534 5.534 20 C 0.051 3.949 21 N -0.271 5.271 22 C 0.110 3.890 23 C -0.185 4.185 24 C -0.219 4.219 25 H 0.263 0.737 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.171 0.829 29 H 0.143 0.857 30 H 0.162 0.838 31 H 0.190 0.810 32 H 0.173 0.827 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 -8.006 -8.987 12.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.172 4.172 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.199 1.199 6 H -0.210 1.210 7 C -0.398 4.398 8 H 0.085 0.915 9 N -0.242 5.242 10 C 0.136 3.864 11 N -0.120 5.120 12 C -0.042 4.042 13 C -0.265 4.265 14 C 0.143 3.857 15 C -0.259 4.259 16 C -0.017 4.017 17 N -0.265 5.265 18 C 0.010 3.990 19 N -0.250 5.250 20 C -0.138 4.138 21 N -0.090 5.090 22 C 0.002 3.998 23 C -0.224 4.224 24 C -0.259 4.259 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.160 0.840 28 H 0.188 0.812 29 H 0.161 0.839 30 H 0.179 0.821 31 H 0.207 0.793 32 H 0.190 0.810 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.860 -7.630 -7.930 11.161 hybrid contribution 1.017 0.784 -0.616 1.424 sum 2.877 -6.845 -8.547 11.322 Atomic orbital electron populations 1.69801 1.05792 1.26896 1.50238 1.25096 0.95075 0.99159 0.97888 0.86194 0.79800 0.82494 0.77678 1.21131 1.19946 1.21025 1.18906 0.95145 0.84968 1.40776 0.91512 1.43906 1.47804 1.02428 1.30065 1.22141 0.87241 1.05608 0.71423 1.51737 1.38678 1.03382 1.18172 1.22754 0.96517 0.92913 0.92065 1.18412 1.16048 0.92924 0.99138 1.19496 0.86965 0.89130 0.90117 1.22701 1.03709 1.02545 0.96927 1.22983 0.93282 0.88109 0.97332 1.68353 1.14684 1.19840 1.23590 1.24800 0.89724 0.99611 0.84836 1.68461 1.23353 1.02445 1.30722 1.23782 1.00667 0.92108 0.97218 1.77417 1.12606 1.14612 1.04397 1.21293 0.91821 0.89718 0.96969 1.23081 1.05794 1.02476 0.91023 1.23325 0.99351 0.99720 1.03519 0.92688 0.90963 0.84029 0.81180 0.83904 0.82098 0.79331 0.81016 0.88837 0.88048 0.90282 0.90504 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.42 11.28 55.49 0.63 -22.79 16 2 C 0.03 0.76 4.97 -17.43 -0.09 0.67 16 3 Si 0.91 21.14 29.61 -169.99 -5.03 16.10 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.27 -6.86 8.17 -15.06 -0.12 -6.98 16 8 H 0.07 1.75 7.08 -52.49 -0.37 1.38 16 9 N -0.53 -12.04 3.05 -169.35 -0.52 -12.56 16 10 C 0.34 7.35 6.63 -63.75 -0.42 6.93 16 11 N -0.34 -6.81 3.83 -64.30 -0.25 -7.06 16 12 C 0.11 2.00 11.22 -16.92 -0.19 1.81 16 13 C -0.25 -4.25 6.07 -105.35 -0.64 -4.89 16 14 C 0.29 4.36 6.79 -82.59 -0.56 3.80 16 15 C -0.24 -2.93 9.69 -38.99 -0.38 -3.31 16 16 C 0.15 1.67 11.29 -17.27 -0.20 1.47 16 17 N -0.55 -7.12 10.43 -14.66 -0.15 -7.27 16 18 C 0.30 3.86 12.28 -92.23 -1.13 2.72 16 19 N -0.53 -8.02 10.20 -11.11 -0.11 -8.13 16 20 C 0.05 0.89 11.46 -17.04 -0.20 0.69 16 21 N -0.27 -5.73 12.53 30.82 0.39 -5.34 16 22 C 0.11 2.17 6.61 -67.93 -0.45 1.72 16 23 C -0.19 -3.44 9.79 -26.73 -0.26 -3.70 16 24 C -0.22 -4.04 10.08 -26.73 -0.27 -4.31 16 25 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 26 H 0.07 1.36 8.02 -51.93 -0.42 0.94 16 27 H 0.14 3.49 5.31 -51.93 -0.28 3.22 16 28 H 0.17 2.65 8.06 -52.49 -0.42 2.23 16 29 H 0.14 1.43 7.18 -52.49 -0.38 1.06 16 30 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.19 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.17 2.32 7.42 -52.49 -0.39 1.93 16 33 H 0.09 1.63 8.10 -51.92 -0.42 1.21 16 34 H 0.10 2.10 6.88 -51.93 -0.36 1.74 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.09 1.77 8.03 -51.93 -0.42 1.35 16 LS Contribution 324.10 15.07 4.88 4.88 Total: -1.00 -29.30 324.10 -9.34 -38.65 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.27 Total: 6.89 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -4.90 Total: -3.36 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -0.02 Total: -63.16 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.30 -9.34 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848477714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.250 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds