Wall clock time and date at job start Tue Mar 31 2020 05:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99553 * 2 1 4 4 H 1.48501 * 109.46985 * 90.00212 * 3 2 1 5 5 H 1.48507 * 109.46751 * 210.00145 * 3 2 1 6 6 H 1.48499 * 109.47222 * 329.99834 * 3 2 1 7 7 C 1.38805 * 120.00621 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00373 * 201.85921 * 7 2 1 9 9 N 1.36941 * 119.99684 * 21.85227 * 7 2 1 10 10 C 1.46497 * 119.99929 * 34.58696 * 9 7 2 11 11 N 1.46505 * 109.47160 * 90.00091 * 10 9 7 12 12 C 1.34611 * 125.86091 * 94.99618 * 11 10 9 13 13 C 1.36616 * 107.60987 * 179.97438 * 12 11 10 14 14 C 1.48199 * 126.25770 * 180.02562 * 13 12 11 15 15 C 1.39838 * 120.55826 * 180.02562 * 14 13 12 16 16 C 1.38210 * 118.29897 * 180.02562 * 15 14 13 17 17 N 1.32507 * 119.19991 * 359.97438 * 16 15 14 18 18 C 1.31797 * 121.07182 * 0.02562 * 17 16 15 19 19 N 1.31704 * 121.87552 * 359.71049 * 18 17 16 20 20 C 1.40974 * 107.48604 * 0.02562 * 13 12 11 21 21 N 1.30610 * 108.05182 * 359.73736 * 20 13 12 22 22 C 1.46494 * 120.00034 * 214.58715 * 9 7 2 23 23 C 1.52996 * 117.50108 * 14.00216 * 22 9 7 24 24 C 1.53002 * 60.00155 * 252.50641 * 23 22 9 25 25 H 0.97008 * 120.00426 * 359.49137 * 1 2 3 26 26 H 1.08995 * 109.47336 * 209.99785 * 10 9 7 27 27 H 1.09005 * 109.47266 * 330.00521 * 10 9 7 28 28 H 1.08002 * 126.19654 * 359.96401 * 12 11 10 29 29 H 1.08001 * 120.85538 * 359.97438 * 15 14 13 30 30 H 1.07998 * 120.39986 * 180.02562 * 16 15 14 31 31 H 1.07994 * 119.06818 * 179.97438 * 18 17 16 32 32 H 1.07999 * 125.97299 * 180.02562 * 20 13 12 33 33 H 1.09007 * 115.55095 * 159.70695 * 22 9 7 34 34 H 1.09003 * 117.49923 * 359.97438 * 23 22 9 35 35 H 1.09003 * 117.50057 * 145.01654 * 23 22 9 36 36 H 1.08992 * 117.50000 * 252.50780 * 24 23 22 37 37 H 1.08997 * 117.51251 * 107.47369 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 1.4001 5 1 3.5477 1.4403 -0.7001 6 1 1.4475 2.6527 -0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0320 -1.2354 0.3488 9 7 1.3995 -2.3456 -0.4404 10 6 0.4328 -2.2826 -1.5393 11 7 1.1317 -2.4565 -2.8151 12 6 1.2797 -3.6167 -3.4816 13 6 1.9877 -3.3522 -4.6196 14 6 2.3827 -4.3365 -5.6547 15 6 3.1111 -3.9331 -6.7782 16 6 3.4543 -4.8899 -7.7147 17 7 3.0856 -6.1475 -7.5191 18 6 2.3992 -6.4966 -6.4495 19 7 2.0542 -5.6210 -5.5281 20 6 2.2739 -1.9719 -4.6293 21 7 1.7558 -1.4435 -3.5530 22 6 1.7127 -3.6319 0.1869 23 6 2.4617 -3.6037 1.5206 24 6 3.1835 -4.0490 0.2472 25 1 -0.4851 0.8400 0.0075 26 1 -0.3062 -3.0748 -1.4191 27 1 -0.0675 -1.3142 -1.5282 28 1 0.9064 -4.5818 -3.1724 29 1 3.3975 -2.9003 -6.9111 30 1 4.0170 -4.6159 -8.5949 31 1 2.1152 -7.5308 -6.3228 32 1 2.8213 -1.4429 -5.3954 33 1 0.9720 -4.4184 0.0418 34 1 2.7219 -2.6281 1.9312 35 1 2.2138 -4.3717 2.2534 36 1 3.4105 -5.1098 0.1421 37 1 3.9180 -3.3664 -0.1802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848477714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:05 Heat of formation + Delta-G solvation = 161.920147 kcal Electronic energy + Delta-G solvation = -21722.232271 eV Core-core repulsion = 18502.617633 eV Total energy + Delta-G solvation = -3219.614638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.17005 -41.31887 -38.86124 -35.72277 -34.84433 -33.77725 -32.98898 -31.61152 -30.36778 -27.56885 -25.83557 -25.16626 -24.59070 -23.04628 -22.03039 -21.62500 -21.40027 -19.04728 -18.22334 -17.95683 -17.37234 -16.86545 -16.53725 -16.27773 -15.87674 -15.68318 -15.37850 -15.05998 -14.52131 -14.44036 -14.27172 -13.74682 -13.59467 -13.19230 -12.90849 -12.77031 -12.48359 -12.29061 -12.06961 -11.88538 -11.73564 -11.66896 -11.40343 -11.10835 -10.76391 -10.54749 -10.35471 -10.11556 -9.06860 -8.81145 -8.07910 -5.62926 -0.08755 0.20404 1.21480 1.37555 1.43526 1.51566 1.85710 2.00999 2.39734 3.06740 3.11395 3.19280 3.30638 3.38688 3.41993 3.58889 3.99884 4.08503 4.18152 4.22462 4.26737 4.36784 4.37861 4.42661 4.73873 4.79335 4.86746 4.94091 4.98545 5.07472 5.21034 5.22645 5.46007 5.56138 5.58030 5.78212 6.16674 6.20301 6.37391 6.91025 6.98418 7.27132 7.59435 8.05020 8.93896 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.004676 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.668140 B = 5987.200756 C = 6755.943360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.009 4.009 3 Si 0.953 3.047 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.267 4.267 8 H 0.049 0.951 9 N -0.545 5.545 10 C 0.350 3.650 11 N -0.352 5.352 12 C 0.108 3.892 13 C -0.247 4.247 14 C 0.261 3.739 15 C -0.232 4.232 16 C 0.150 3.850 17 N -0.557 5.557 18 C 0.292 3.708 19 N -0.553 5.553 20 C 0.060 3.940 21 N -0.326 5.326 22 C 0.093 3.907 23 C -0.180 4.180 24 C -0.206 4.206 25 H 0.260 0.740 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.188 0.812 29 H 0.167 0.833 30 H 0.200 0.800 31 H 0.217 0.783 32 H 0.207 0.793 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 -9.778 -10.671 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.208 4.208 3 Si 0.781 3.219 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.397 4.397 8 H 0.067 0.933 9 N -0.261 5.261 10 C 0.144 3.856 11 N -0.136 5.136 12 C -0.046 4.046 13 C -0.261 4.261 14 C 0.117 3.883 15 C -0.254 4.254 16 C -0.013 4.013 17 N -0.272 5.272 18 C 0.004 3.996 19 N -0.269 5.269 20 C -0.129 4.129 21 N -0.146 5.146 22 C -0.014 4.014 23 C -0.219 4.219 24 C -0.246 4.246 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.205 0.795 29 H 0.184 0.816 30 H 0.217 0.783 31 H 0.233 0.767 32 H 0.224 0.776 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.738 -9.426 -9.625 13.747 hybrid contribution 0.833 1.187 -0.288 1.479 sum 3.571 -8.238 -9.913 13.375 Atomic orbital electron populations 1.69894 1.06391 1.26856 1.51770 1.25546 0.95612 1.00962 0.98648 0.85523 0.78387 0.80349 0.77597 1.20522 1.20867 1.21237 1.18840 0.94392 0.86381 1.40045 0.93330 1.43979 1.48049 1.02781 1.31259 1.21769 0.87262 1.04761 0.71791 1.51172 1.39933 1.04141 1.18312 1.23060 0.96644 0.92658 0.92214 1.18612 1.15067 0.93204 0.99196 1.19494 0.88726 0.89184 0.90871 1.22976 1.02503 1.04068 0.95875 1.23638 0.92414 0.87257 0.98019 1.68446 1.14568 1.20735 1.23488 1.25357 0.89385 1.00474 0.84414 1.68416 1.23999 1.02719 1.31770 1.24348 0.99315 0.92594 0.96610 1.77345 1.14821 1.16128 1.06305 1.21601 0.93064 0.89148 0.97590 1.23074 1.05337 1.02058 0.91411 1.23235 0.97802 1.00628 1.02934 0.93101 0.88611 0.87347 0.79463 0.81567 0.78287 0.76691 0.77614 0.86136 0.90870 0.87093 0.87530 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.34 11.28 21.65 0.24 -49.10 16 2 C -0.01 -0.46 4.97 84.86 0.42 -0.04 16 3 Si 0.95 44.58 29.61 68.60 2.03 46.61 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 7 C -0.27 -14.00 8.17 84.03 0.69 -13.31 16 8 H 0.05 2.67 7.08 -2.91 -0.02 2.65 16 9 N -0.54 -25.19 3.05 -689.70 -2.10 -27.29 16 10 C 0.35 15.32 6.63 170.96 1.13 16.45 16 11 N -0.35 -14.37 3.83 -357.34 -1.37 -15.74 16 12 C 0.11 3.75 11.22 83.89 0.94 4.69 16 13 C -0.25 -8.03 6.07 -20.34 -0.12 -8.15 16 14 C 0.26 7.38 6.79 41.98 0.29 7.66 16 15 C -0.23 -5.01 9.69 22.65 0.22 -4.79 16 16 C 0.15 2.86 11.29 84.58 0.96 3.81 16 17 N -0.56 -12.68 10.43 -200.30 -2.09 -14.77 16 18 C 0.29 6.77 12.28 180.91 2.22 9.00 16 19 N -0.55 -15.46 10.20 -189.07 -1.93 -17.38 16 20 C 0.06 2.00 11.46 85.55 0.98 2.98 16 21 N -0.33 -13.93 12.53 -56.40 -0.71 -14.64 16 22 C 0.09 3.59 6.61 44.99 0.30 3.88 16 23 C -0.18 -6.53 9.79 30.59 0.30 -6.23 16 24 C -0.21 -7.37 10.08 30.60 0.31 -7.07 16 25 H 0.26 13.74 8.31 -92.70 -0.77 12.97 16 26 H 0.10 3.59 8.02 -2.39 -0.02 3.58 16 27 H 0.11 5.55 5.31 -2.38 -0.01 5.54 16 28 H 0.19 5.61 8.06 -2.91 -0.02 5.59 16 29 H 0.17 2.69 7.18 -2.91 -0.02 2.67 16 30 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.22 3.50 8.06 -2.91 -0.02 3.47 16 32 H 0.21 5.09 7.42 -2.91 -0.02 5.07 16 33 H 0.12 3.94 8.10 -2.38 -0.02 3.92 16 34 H 0.07 3.08 6.88 -2.39 -0.02 3.06 16 35 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.06 2.35 8.03 -2.39 -0.02 2.33 16 Total: -1.00 -65.17 324.10 3.80 -61.37 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 1.09 Total: 22.04 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 8.63 Total: 8.90 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -7.95 Total: -138.92 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -65.17 3.80 -61.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848477714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.294 kcal (2) G-P(sol) polarization free energy of solvation -65.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds