Wall clock time and date at job start Tue Mar 31 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34636 * 116.99855 * 2 1 4 4 O 1.21509 * 120.00384 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00274 * 180.02562 * 3 2 1 6 6 C 1.46919 * 120.63395 * 179.97438 * 5 3 2 7 7 C 1.53195 * 108.89273 * 126.29715 * 6 5 3 8 8 C 1.53346 * 109.14901 * 54.57640 * 7 6 5 9 9 C 1.50701 * 109.42092 * 178.67337 * 8 7 6 10 10 O 1.20822 * 120.00141 * 120.12317 * 9 8 7 11 11 O 1.34234 * 119.99950 * 300.13398 * 9 8 7 12 12 C 1.45198 * 116.99842 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.46905 * 179.97438 * 12 11 9 14 14 C 1.50705 * 109.47213 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99462 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00050 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99964 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47160 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47448 * 119.99865 * 18 16 14 21 21 H 1.48508 * 109.47060 * 239.99846 * 18 16 14 22 22 C 1.53034 * 109.61010 * 298.71225 * 8 7 6 23 23 C 1.46933 * 120.62602 * 359.97266 * 5 3 2 24 24 H 1.09002 * 109.47122 * 299.99367 * 1 2 3 25 25 H 1.08996 * 109.47710 * 60.00013 * 1 2 3 26 26 H 1.08999 * 109.46771 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.58751 * 246.15665 * 6 5 3 28 28 H 1.08996 * 109.58750 * 6.43850 * 6 5 3 29 29 H 1.08997 * 109.49914 * 174.65962 * 7 6 5 30 30 H 1.09002 * 109.49585 * 294.75599 * 7 6 5 31 31 H 1.09001 * 109.42242 * 58.75065 * 8 7 6 32 32 H 1.09004 * 109.46883 * 299.99668 * 12 11 9 33 33 H 1.08994 * 109.47278 * 59.99706 * 12 11 9 34 34 H 1.08994 * 109.47542 * 300.00189 * 13 12 11 35 35 H 1.09004 * 109.47172 * 59.99786 * 13 12 11 36 36 H 0.97000 * 119.99684 * 179.97438 * 17 16 14 37 37 H 1.08994 * 109.50232 * 301.42239 * 22 8 7 38 38 H 1.09007 * 109.52628 * 181.33900 * 22 8 7 39 39 H 1.08994 * 109.58580 * 353.42544 * 23 5 3 40 40 H 1.09006 * 109.57831 * 113.70037 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0905 2.5719 -0.0011 7 6 5.0811 2.6138 1.1667 8 6 6.0233 1.4077 1.0705 9 6 7.0215 1.4605 2.1983 10 8 7.0785 0.5561 2.9975 11 8 7.8473 2.5123 2.3151 12 6 8.7824 2.4961 3.4257 13 6 9.6338 3.7669 3.3941 14 6 10.6040 3.7505 4.5472 15 1 10.6121 2.9171 5.2341 16 6 11.4804 4.7997 4.7258 17 7 11.4701 5.8147 3.8895 18 14 12.6834 4.7789 6.1546 19 1 12.4947 3.5344 6.9426 20 1 14.0729 4.8290 5.6328 21 1 12.4387 5.9571 7.0249 22 6 5.2125 0.1135 1.1675 23 6 4.2229 0.0469 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.6274 2.7029 -0.9406 28 1 3.3559 3.3689 0.1141 29 1 5.6597 3.5363 1.1201 30 1 4.5346 2.5737 2.1090 31 1 6.5509 1.4351 0.1171 32 1 8.2305 2.4513 4.3647 33 1 9.4298 1.6232 3.3429 34 1 10.1856 3.8114 2.4552 35 1 8.9866 4.6401 3.4767 36 1 12.0865 6.5530 4.0154 37 1 4.6649 0.0969 2.1098 38 1 5.8859 -0.7426 1.1229 39 1 3.5759 -0.8223 0.1176 40 1 4.7686 -0.0289 -0.9411 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850111595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:35 Heat of formation + Delta-G solvation = -181.045787 kcal Electronic energy + Delta-G solvation = -22413.710356 eV Core-core repulsion = 18807.329177 eV Total energy + Delta-G solvation = -3606.381179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.99945 -40.15161 -38.25564 -36.53734 -36.06166 -33.53593 -33.24816 -31.44148 -30.29595 -28.20093 -26.45252 -24.89189 -23.64682 -22.55179 -21.12334 -20.61225 -19.89830 -18.40418 -17.55340 -17.19103 -16.79863 -16.27828 -15.98600 -15.81614 -15.13677 -14.74425 -14.53882 -14.42488 -14.02137 -13.89909 -13.28783 -13.07175 -12.82751 -12.66157 -12.38213 -12.33242 -12.01825 -11.59359 -11.26067 -11.13148 -11.07035 -11.02535 -10.93976 -10.79006 -10.71824 -10.64355 -10.18292 -9.67481 -9.63388 -9.30640 -9.09557 -8.46831 -6.12659 -4.16977 1.85359 2.49571 2.54855 3.10841 3.26043 3.33765 3.38821 3.58122 4.34886 4.37872 4.49879 4.70796 4.72867 4.83426 4.91403 4.95344 5.05116 5.13122 5.18629 5.24101 5.36090 5.47156 5.48352 5.54191 5.67319 5.86101 5.98766 6.01579 6.06509 6.07528 6.16562 6.61136 6.96865 7.00175 7.53543 7.59646 7.84435 7.98063 8.15514 8.23738 8.88821 9.47670 10.98866 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.042370 B = 0.002662 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.680501 B =10514.973312 C =10819.859501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.650 3.350 4 O -0.573 6.573 5 N -0.595 5.595 6 C 0.129 3.871 7 C -0.128 4.128 8 C -0.082 4.082 9 C 0.459 3.541 10 O -0.517 6.517 11 O -0.355 6.355 12 C 0.075 3.925 13 C 0.024 3.976 14 C -0.526 4.526 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.120 4.120 23 C 0.113 3.887 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.263 0.737 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.603 -11.590 -11.125 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.285 6.285 3 C 0.404 3.596 4 O -0.462 6.462 5 N -0.336 5.336 6 C 0.008 3.992 7 C -0.166 4.166 8 C -0.101 4.101 9 C 0.301 3.699 10 O -0.406 6.406 11 O -0.271 6.271 12 C 0.002 3.998 13 C -0.013 4.013 14 C -0.564 4.564 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.158 4.158 23 C -0.009 4.009 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.743 -11.381 -10.898 24.487 hybrid contribution 0.717 0.002 0.937 1.180 sum -18.026 -11.379 -9.961 23.530 Atomic orbital electron populations 1.23195 0.74441 1.03448 1.02754 1.86228 1.24136 1.31062 1.87078 1.18028 0.83157 0.82138 0.76260 1.90995 1.64206 1.34927 1.56114 1.47000 1.01921 1.08814 1.75826 1.21711 0.95260 0.83595 0.98670 1.22026 0.96814 0.98287 0.99511 1.21092 0.94245 0.97442 0.97366 1.23445 0.80611 0.80268 0.85544 1.90627 1.69076 1.38140 1.42803 1.86517 1.46083 1.43067 1.51482 1.23642 0.88694 1.02497 0.84920 1.19171 0.93579 0.90200 0.98315 1.21017 1.18262 1.05725 1.11423 0.92235 1.24986 0.97358 0.95248 0.96597 1.69982 1.37537 1.08712 1.36588 0.86420 0.80714 0.78146 0.82059 1.19602 1.20811 1.20815 1.21846 0.97753 0.96829 0.99381 1.21805 0.93668 0.86636 0.98781 0.91834 0.91871 0.87978 0.90227 0.87969 0.88081 0.90675 0.87138 0.92379 0.92354 0.95352 0.95350 0.92747 0.90362 0.89258 0.88481 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -3.65 9.20 -40.31 -0.37 -4.02 16 3 C 0.65 7.66 8.43 54.06 0.46 8.12 16 4 O -0.57 -8.35 15.54 -19.28 -0.30 -8.65 16 5 N -0.59 -5.93 2.97 -178.53 -0.53 -6.46 16 6 C 0.13 1.19 6.42 -3.71 -0.02 1.17 16 7 C -0.13 -1.34 5.33 -26.45 -0.14 -1.48 16 8 C -0.08 -0.92 2.59 -91.57 -0.24 -1.16 16 9 C 0.46 7.52 7.26 36.01 0.26 7.78 16 10 O -0.52 -9.82 15.73 -18.75 -0.29 -10.11 16 11 O -0.36 -6.80 10.10 -39.27 -0.40 -7.20 16 12 C 0.07 1.64 5.40 37.16 0.20 1.84 16 13 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 14 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 18 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.12 -1.17 4.66 -26.59 -0.12 -1.29 16 23 C 0.11 0.89 6.45 -3.69 -0.02 0.87 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.10 1.04 7.00 -51.93 -0.36 0.68 16 29 H 0.10 1.07 8.09 -51.93 -0.42 0.65 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 33 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 38 H 0.09 0.84 8.07 -51.92 -0.42 0.42 16 39 H 0.10 0.70 6.93 -51.93 -0.36 0.35 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -33.77 338.52 -6.38 -40.15 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -6.17 Total: -4.00 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 0.88 Total: 4.37 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.21 Total: -31.92 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -1.36 Total: -29.99 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.77 -6.38 -40.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850111595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.896 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds