Wall clock time and date at job start Tue Mar 31 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34636 * 116.99855 * 2 1 4 4 O 1.21509 * 120.00384 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00274 * 180.02562 * 3 2 1 6 6 C 1.46919 * 120.63395 * 179.97438 * 5 3 2 7 7 C 1.53195 * 108.89273 * 126.29715 * 6 5 3 8 8 C 1.53346 * 109.14901 * 54.57640 * 7 6 5 9 9 C 1.50701 * 109.42092 * 178.67337 * 8 7 6 10 10 O 1.20822 * 120.00141 * 120.12317 * 9 8 7 11 11 O 1.34234 * 119.99950 * 300.13398 * 9 8 7 12 12 C 1.45198 * 116.99842 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.46905 * 179.97438 * 12 11 9 14 14 C 1.50705 * 109.47213 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99462 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00050 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99964 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47160 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47448 * 119.99865 * 18 16 14 21 21 H 1.48508 * 109.47060 * 239.99846 * 18 16 14 22 22 C 1.53034 * 109.61010 * 298.71225 * 8 7 6 23 23 C 1.46933 * 120.62602 * 359.97266 * 5 3 2 24 24 H 1.09002 * 109.47122 * 299.99367 * 1 2 3 25 25 H 1.08996 * 109.47710 * 60.00013 * 1 2 3 26 26 H 1.08999 * 109.46771 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.58751 * 246.15665 * 6 5 3 28 28 H 1.08996 * 109.58750 * 6.43850 * 6 5 3 29 29 H 1.08997 * 109.49914 * 174.65962 * 7 6 5 30 30 H 1.09002 * 109.49585 * 294.75599 * 7 6 5 31 31 H 1.09001 * 109.42242 * 58.75065 * 8 7 6 32 32 H 1.09004 * 109.46883 * 299.99668 * 12 11 9 33 33 H 1.08994 * 109.47278 * 59.99706 * 12 11 9 34 34 H 1.08994 * 109.47542 * 300.00189 * 13 12 11 35 35 H 1.09004 * 109.47172 * 59.99786 * 13 12 11 36 36 H 0.97000 * 119.99684 * 179.97438 * 17 16 14 37 37 H 1.08994 * 109.50232 * 301.42239 * 22 8 7 38 38 H 1.09007 * 109.52628 * 181.33900 * 22 8 7 39 39 H 1.08994 * 109.58580 * 353.42544 * 23 5 3 40 40 H 1.09006 * 109.57831 * 113.70037 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0905 2.5719 -0.0011 7 6 5.0811 2.6138 1.1667 8 6 6.0233 1.4077 1.0705 9 6 7.0215 1.4605 2.1983 10 8 7.0785 0.5561 2.9975 11 8 7.8473 2.5123 2.3151 12 6 8.7824 2.4961 3.4257 13 6 9.6338 3.7669 3.3941 14 6 10.6040 3.7505 4.5472 15 1 10.6121 2.9171 5.2341 16 6 11.4804 4.7997 4.7258 17 7 11.4701 5.8147 3.8895 18 14 12.6834 4.7789 6.1546 19 1 12.4947 3.5344 6.9426 20 1 14.0729 4.8290 5.6328 21 1 12.4387 5.9571 7.0249 22 6 5.2125 0.1135 1.1675 23 6 4.2229 0.0469 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.6274 2.7029 -0.9406 28 1 3.3559 3.3689 0.1141 29 1 5.6597 3.5363 1.1201 30 1 4.5346 2.5737 2.1090 31 1 6.5509 1.4351 0.1171 32 1 8.2305 2.4513 4.3647 33 1 9.4298 1.6232 3.3429 34 1 10.1856 3.8114 2.4552 35 1 8.9866 4.6401 3.4767 36 1 12.0865 6.5530 4.0154 37 1 4.6649 0.0969 2.1098 38 1 5.8859 -0.7426 1.1229 39 1 3.5759 -0.8223 0.1176 40 1 4.7686 -0.0289 -0.9411 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850111595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:34 Heat of formation + Delta-G solvation = -202.014200 kcal Electronic energy + Delta-G solvation = -22414.619614 eV Core-core repulsion = 18807.329177 eV Total energy + Delta-G solvation = -3607.290438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.94376 -41.38965 -39.16936 -37.72920 -37.25357 -35.46040 -34.34486 -32.32913 -32.16093 -28.91586 -27.59807 -26.56868 -24.43970 -23.71686 -22.81799 -21.79835 -20.83311 -19.22597 -18.99222 -18.26118 -18.01815 -17.64390 -17.48611 -17.22964 -16.49066 -15.88191 -15.57614 -15.30536 -15.00646 -14.77171 -14.64054 -14.37664 -14.30038 -13.81047 -13.44468 -13.23570 -13.11693 -12.94192 -12.87255 -12.60879 -12.57791 -12.34443 -11.98577 -11.86678 -11.79618 -11.76006 -11.54525 -11.48905 -11.45502 -11.22987 -10.62324 -9.89188 -8.27927 -6.40830 1.11525 1.17916 1.40608 1.40969 1.54243 1.64588 1.78727 2.39550 2.89702 3.06608 3.45689 3.63486 3.70422 3.94536 4.12706 4.21678 4.23976 4.26822 4.30016 4.36020 4.37614 4.60368 4.65592 4.67634 4.71832 4.72708 4.80766 4.89896 5.04006 5.20871 5.24977 5.28229 5.40372 5.46892 5.56864 5.74986 6.06279 6.20011 6.71094 6.75783 7.14712 7.29034 8.84767 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.042370 B = 0.002662 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.680501 B =10514.973312 C =10819.859501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.372 6.372 3 C 0.644 3.356 4 O -0.609 6.609 5 N -0.594 5.594 6 C 0.133 3.867 7 C -0.123 4.123 8 C -0.073 4.073 9 C 0.456 3.544 10 O -0.543 6.543 11 O -0.362 6.362 12 C 0.090 3.910 13 C 0.031 3.969 14 C -0.550 4.550 15 H 0.063 0.937 16 C 0.006 3.994 17 N -0.926 5.926 18 Si 0.972 3.028 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.276 1.276 22 C -0.114 4.114 23 C 0.119 3.881 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.136 0.864 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.143 0.857 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.009 0.991 35 H 0.006 0.994 36 H 0.268 0.732 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.616 -12.927 -11.751 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.285 6.285 3 C 0.399 3.601 4 O -0.501 6.501 5 N -0.334 5.334 6 C 0.012 3.988 7 C -0.161 4.161 8 C -0.092 4.092 9 C 0.301 3.699 10 O -0.434 6.434 11 O -0.278 6.278 12 C 0.017 3.983 13 C -0.006 4.006 14 C -0.588 4.588 15 H 0.081 0.919 16 C -0.193 4.193 17 N -0.565 5.565 18 Si 0.796 3.204 19 H -0.187 1.187 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.152 4.152 23 C -0.003 4.003 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.154 0.846 27 H 0.126 0.874 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.027 0.973 35 H 0.025 0.975 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.767 -12.751 -11.535 25.453 hybrid contribution 0.644 0.380 1.105 1.334 sum -18.123 -12.371 -10.431 24.296 Atomic orbital electron populations 1.23485 0.72943 1.05600 1.02429 1.86234 1.25623 1.29909 1.86716 1.18262 0.83641 0.82210 0.75965 1.90969 1.65116 1.36182 1.57825 1.47153 1.01614 1.09687 1.74993 1.21719 0.94650 0.83257 0.99175 1.21970 0.96745 0.97952 0.99441 1.21285 0.93156 0.98511 0.96250 1.24531 0.80241 0.78831 0.86329 1.90615 1.69735 1.38881 1.44147 1.86514 1.46300 1.44690 1.50325 1.23121 0.88939 1.00333 0.85887 1.18974 0.93409 0.91298 0.96928 1.21404 1.19049 1.06140 1.12164 0.91868 1.25948 0.99210 0.94687 0.99439 1.70094 1.38533 1.09443 1.38429 0.85291 0.78150 0.78511 0.78441 1.18722 1.19967 1.20110 1.21823 0.97833 0.96130 0.99440 1.21933 0.93192 0.86043 0.99085 0.92529 0.91908 0.84572 0.87389 0.89126 0.88200 0.92416 0.83987 0.92666 0.92242 0.97303 0.97524 0.92321 0.92375 0.88531 0.87521 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 10.56 113.37 1.20 1.80 16 2 O -0.37 -6.72 9.20 -55.46 -0.51 -7.23 16 3 C 0.64 14.49 8.43 129.79 1.09 15.58 16 4 O -0.61 -17.64 15.54 19.81 0.31 -17.33 16 5 N -0.59 -10.69 2.97 -949.17 -2.82 -13.51 16 6 C 0.13 2.23 6.42 86.36 0.55 2.79 16 7 C -0.12 -2.44 5.33 30.78 0.16 -2.28 16 8 C -0.07 -1.50 2.59 -11.41 -0.03 -1.53 16 9 C 0.46 14.64 7.26 71.24 0.52 15.16 16 10 O -0.54 -20.44 15.73 21.97 0.35 -20.09 16 11 O -0.36 -13.85 10.10 -51.45 -0.52 -14.37 16 12 C 0.09 4.02 5.40 71.98 0.39 4.41 16 13 C 0.03 1.65 5.35 29.85 0.16 1.81 16 14 C -0.55 -31.07 9.11 25.60 0.23 -30.84 16 15 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 16 C 0.01 0.35 5.46 84.65 0.46 0.81 16 17 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 18 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 22 C -0.11 -1.99 4.66 30.68 0.14 -1.84 16 23 C 0.12 1.52 6.45 86.37 0.56 2.07 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 1.80 7.00 -2.39 -0.02 1.78 16 29 H 0.10 2.03 8.09 -2.39 -0.02 2.01 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.14 2.10 8.14 -2.39 -0.02 2.09 16 32 H 0.05 2.46 8.13 -2.38 -0.02 2.44 16 33 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 36 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 38 H 0.10 1.59 8.07 -2.38 -0.02 1.57 16 39 H 0.11 1.23 6.93 -2.39 -0.02 1.21 16 40 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -73.73 338.52 5.58 -68.15 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.02 Total: 5.71 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.44 Total: 7.96 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -2.54 Total: -68.31 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: -0.38 Total: -59.02 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -73.73 5.58 -68.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850111595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.864 kcal (2) G-P(sol) polarization free energy of solvation -73.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds