Wall clock time and date at job start Tue Mar 31 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34636 * 117.00161 * 2 1 4 4 O 1.21506 * 120.00040 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00050 * 180.02562 * 3 2 1 6 6 C 1.46925 * 120.63239 * 179.97438 * 5 3 2 7 7 C 1.53190 * 108.77923 * 233.58839 * 6 5 3 8 8 C 1.53042 * 109.31097 * 305.36767 * 7 6 5 9 9 C 1.50695 * 109.45807 * 181.38584 * 8 7 6 10 10 O 1.20825 * 120.00536 * 359.97438 * 9 8 7 11 11 O 1.34232 * 119.99791 * 179.97438 * 9 8 7 12 12 C 1.45206 * 116.99998 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.47122 * 29.99711 * 12 11 9 14 14 C 1.53002 * 109.47129 * 269.99942 * 12 11 9 15 15 C 1.50703 * 109.47147 * 149.99715 * 12 11 9 16 16 H 1.08005 * 119.99876 * 359.97438 * 15 12 11 17 17 C 1.37874 * 119.99789 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00287 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99733 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47151 * 90.00298 * 19 17 15 21 21 H 1.48507 * 109.47197 * 210.00055 * 19 17 15 22 22 H 1.48498 * 109.47171 * 330.00226 * 19 17 15 23 23 C 1.53042 * 109.53912 * 61.36193 * 8 7 6 24 24 C 1.46931 * 120.63091 * 359.97438 * 5 3 2 25 25 H 1.09001 * 109.46903 * 299.99731 * 1 2 3 26 26 H 1.09003 * 109.47172 * 59.99739 * 1 2 3 27 27 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.58400 * 113.79896 * 6 5 3 29 29 H 1.09004 * 109.70449 * 353.44663 * 6 5 3 30 30 H 1.08999 * 109.50070 * 185.41336 * 7 6 5 31 31 H 1.09003 * 109.49304 * 65.31314 * 7 6 5 32 32 H 1.09005 * 109.45640 * 301.35734 * 8 7 6 33 33 H 1.09004 * 109.47059 * 59.99488 * 14 12 11 34 34 H 1.08992 * 109.47060 * 179.97438 * 14 12 11 35 35 H 1.09004 * 109.46930 * 299.99887 * 14 12 11 36 36 H 0.96996 * 120.00180 * 180.02562 * 18 17 15 37 37 H 1.08992 * 109.49706 * 58.59060 * 23 8 7 38 38 H 1.09008 * 109.49128 * 178.68497 * 23 8 7 39 39 H 1.08998 * 109.58503 * 246.20178 * 24 5 3 40 40 H 1.08997 * 109.58219 * 6.48433 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0906 2.5718 -0.0011 7 6 5.0816 2.6091 -1.1687 8 6 6.0234 1.4066 -1.0718 9 6 7.0214 1.4585 -2.1997 10 8 6.9833 2.3637 -2.9991 11 8 7.9529 0.4990 -2.3163 12 6 8.8811 0.6128 -3.4271 13 1 9.0293 1.6650 -3.6704 14 6 8.3108 -0.1167 -4.6451 15 6 10.2012 -0.0050 -3.0440 16 1 10.3298 -0.4394 -2.0636 17 6 11.2446 -0.0157 -3.9452 18 7 11.0881 0.5136 -5.1388 19 14 12.8811 -0.7810 -3.4700 20 1 12.8788 -2.2206 -3.8344 21 1 13.9792 -0.0894 -4.1922 22 1 13.0864 -0.6412 -2.0060 23 6 5.2123 0.1123 -1.1677 24 6 4.2229 0.0467 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 4.6276 2.7035 0.9383 29 1 3.3578 3.3702 -0.1181 30 1 5.6622 3.5305 -1.1238 31 1 4.5352 2.5683 -2.1110 32 1 6.5510 1.4345 -0.1184 33 1 7.3559 0.3301 -4.9221 34 1 9.0073 -0.0309 -5.4790 35 1 8.1625 -1.1689 -4.4018 36 1 11.8221 0.5057 -5.7729 37 1 4.6649 0.0950 -2.1100 38 1 5.8862 -0.7434 -1.1221 39 1 4.7706 -0.0278 0.9389 40 1 3.5756 -0.8226 -0.1160 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850843080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:11 Heat of formation + Delta-G solvation = -175.710302 kcal Electronic energy + Delta-G solvation = -23031.702076 eV Core-core repulsion = 19425.552260 eV Total energy + Delta-G solvation = -3606.149815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.86967 -39.79569 -38.07033 -36.39335 -35.71774 -33.40363 -33.06440 -31.31964 -29.60995 -28.06032 -26.12542 -25.33261 -23.53636 -22.62786 -21.35621 -20.18505 -19.39237 -18.30365 -17.25126 -16.97443 -16.72466 -16.55410 -15.48190 -15.14580 -15.00103 -14.63316 -14.50101 -14.25106 -13.70485 -13.59712 -13.12833 -12.98330 -12.57196 -12.28931 -12.22043 -12.00459 -11.70435 -11.45005 -11.21690 -11.09288 -10.98665 -10.92030 -10.84021 -10.74395 -10.55866 -10.40898 -10.29922 -9.62275 -9.53380 -8.97380 -8.92926 -8.51510 -6.20573 -4.27807 1.95479 2.62475 2.95424 3.22882 3.28249 3.31739 3.58542 3.70066 4.30746 4.59604 4.63384 4.86760 4.90941 4.96832 4.99344 5.11409 5.12623 5.19748 5.28361 5.38920 5.52771 5.56773 5.65128 5.81814 5.90816 6.01572 6.11377 6.22585 6.30165 6.61871 6.85965 6.89214 7.11043 7.15277 7.57766 7.70467 7.91871 8.07249 8.11900 8.61348 8.86203 9.37917 10.86838 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036782 B = 0.003232 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.058590 B = 8661.130813 C = 8821.615603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.650 3.350 4 O -0.576 6.576 5 N -0.594 5.594 6 C 0.129 3.871 7 C -0.120 4.120 8 C -0.083 4.083 9 C 0.455 3.545 10 O -0.520 6.520 11 O -0.355 6.355 12 C 0.215 3.785 13 H 0.046 0.954 14 C -0.154 4.154 15 C -0.521 4.521 16 H 0.069 0.931 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.912 3.088 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.271 1.271 23 C -0.127 4.127 24 C 0.114 3.886 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.015 0.985 34 H 0.099 0.901 35 H 0.036 0.964 36 H 0.266 0.734 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.296 -1.882 11.225 19.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.404 3.596 4 O -0.465 6.465 5 N -0.334 5.334 6 C 0.008 3.992 7 C -0.158 4.158 8 C -0.102 4.102 9 C 0.298 3.702 10 O -0.410 6.410 11 O -0.271 6.271 12 C 0.163 3.837 13 H 0.063 0.937 14 C -0.212 4.212 15 C -0.559 4.559 16 H 0.087 0.913 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.739 3.261 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.165 4.165 24 C -0.008 4.008 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.034 0.966 34 H 0.117 0.883 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.433 -1.325 10.785 19.700 hybrid contribution 0.843 -0.304 -0.081 0.900 sum -15.590 -1.629 10.704 18.981 Atomic orbital electron populations 1.23185 0.74551 1.03412 1.02670 1.86235 1.24046 1.31065 1.87081 1.18027 0.83185 0.82106 0.76258 1.90981 1.64258 1.34954 1.56345 1.47014 1.01888 1.08894 1.75636 1.21723 0.95205 0.83589 0.98727 1.21848 0.96604 0.98158 0.99163 1.21004 0.94337 0.97095 0.97804 1.23238 0.81394 0.80366 0.85235 1.90602 1.71820 1.35545 1.43042 1.86471 1.40789 1.47238 1.52622 1.20626 0.84744 0.98199 0.80150 0.93656 1.22157 0.98880 0.98688 1.01474 1.21027 0.94471 1.39257 1.01180 0.91303 1.24896 0.99174 0.95240 0.94708 1.69898 1.32722 1.44238 1.05838 0.86272 0.81995 0.79122 0.78728 1.20349 1.20979 1.19614 1.21911 0.97897 0.97500 0.99187 1.21797 0.93642 0.86414 0.98970 0.91943 0.91880 0.87998 0.90558 0.88176 0.89133 0.90420 0.87537 0.96611 0.88276 0.94437 0.92381 0.90856 0.88450 0.90492 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -4.03 9.20 -40.31 -0.37 -4.40 16 3 C 0.65 8.36 8.43 54.06 0.46 8.82 16 4 O -0.58 -8.89 15.55 -19.28 -0.30 -9.19 16 5 N -0.59 -6.73 2.97 -178.58 -0.53 -7.26 16 6 C 0.13 1.37 6.43 -3.71 -0.02 1.34 16 7 C -0.12 -1.49 4.65 -26.61 -0.12 -1.62 16 8 C -0.08 -1.14 2.59 -91.73 -0.24 -1.37 16 9 C 0.46 9.06 7.23 36.00 0.26 9.32 16 10 O -0.52 -11.96 15.20 -18.75 -0.28 -12.24 16 11 O -0.36 -8.12 9.74 -39.26 -0.38 -8.51 16 12 C 0.22 5.70 2.56 -27.88 -0.07 5.63 16 13 H 0.05 1.34 7.16 -51.93 -0.37 0.96 16 14 C -0.15 -3.88 9.33 37.16 0.35 -3.53 16 15 C -0.52 -14.45 8.90 -34.44 -0.31 -14.75 16 16 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 19 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 C -0.13 -1.49 5.30 -26.63 -0.14 -1.63 16 24 C 0.11 1.09 6.45 -3.73 -0.02 1.06 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.10 1.13 7.01 -51.93 -0.36 0.77 16 30 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 31 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 32 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.10 2.67 6.07 -51.93 -0.32 2.36 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 1.14 8.08 -51.92 -0.42 0.72 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.85 6.92 -51.93 -0.36 0.49 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -33.09 333.39 -6.15 -39.24 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.02 Total: -0.32 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 1.11 Total: 6.36 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 0.10 Total: -31.77 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.34 Total: -34.35 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.09 -6.15 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850843080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.467 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds