Wall clock time and date at job start Tue Mar 31 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34636 * 117.00161 * 2 1 4 4 O 1.21506 * 120.00040 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00050 * 180.02562 * 3 2 1 6 6 C 1.46925 * 120.63239 * 179.97438 * 5 3 2 7 7 C 1.53190 * 108.77923 * 233.58839 * 6 5 3 8 8 C 1.53042 * 109.31097 * 305.36767 * 7 6 5 9 9 C 1.50695 * 109.45807 * 181.38584 * 8 7 6 10 10 O 1.20825 * 120.00536 * 359.97438 * 9 8 7 11 11 O 1.34232 * 119.99791 * 179.97438 * 9 8 7 12 12 C 1.45206 * 116.99998 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.47122 * 29.99711 * 12 11 9 14 14 C 1.53002 * 109.47129 * 269.99942 * 12 11 9 15 15 C 1.50703 * 109.47147 * 149.99715 * 12 11 9 16 16 H 1.08005 * 119.99876 * 359.97438 * 15 12 11 17 17 C 1.37874 * 119.99789 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00287 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99733 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47151 * 90.00298 * 19 17 15 21 21 H 1.48507 * 109.47197 * 210.00055 * 19 17 15 22 22 H 1.48498 * 109.47171 * 330.00226 * 19 17 15 23 23 C 1.53042 * 109.53912 * 61.36193 * 8 7 6 24 24 C 1.46931 * 120.63091 * 359.97438 * 5 3 2 25 25 H 1.09001 * 109.46903 * 299.99731 * 1 2 3 26 26 H 1.09003 * 109.47172 * 59.99739 * 1 2 3 27 27 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.58400 * 113.79896 * 6 5 3 29 29 H 1.09004 * 109.70449 * 353.44663 * 6 5 3 30 30 H 1.08999 * 109.50070 * 185.41336 * 7 6 5 31 31 H 1.09003 * 109.49304 * 65.31314 * 7 6 5 32 32 H 1.09005 * 109.45640 * 301.35734 * 8 7 6 33 33 H 1.09004 * 109.47059 * 59.99488 * 14 12 11 34 34 H 1.08992 * 109.47060 * 179.97438 * 14 12 11 35 35 H 1.09004 * 109.46930 * 299.99887 * 14 12 11 36 36 H 0.96996 * 120.00180 * 180.02562 * 18 17 15 37 37 H 1.08992 * 109.49706 * 58.59060 * 23 8 7 38 38 H 1.09008 * 109.49128 * 178.68497 * 23 8 7 39 39 H 1.08998 * 109.58503 * 246.20178 * 24 5 3 40 40 H 1.08997 * 109.58219 * 6.48433 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0906 2.5718 -0.0011 7 6 5.0816 2.6091 -1.1687 8 6 6.0234 1.4066 -1.0718 9 6 7.0214 1.4585 -2.1997 10 8 6.9833 2.3637 -2.9991 11 8 7.9529 0.4990 -2.3163 12 6 8.8811 0.6128 -3.4271 13 1 9.0293 1.6650 -3.6704 14 6 8.3108 -0.1167 -4.6451 15 6 10.2012 -0.0050 -3.0440 16 1 10.3298 -0.4394 -2.0636 17 6 11.2446 -0.0157 -3.9452 18 7 11.0881 0.5136 -5.1388 19 14 12.8811 -0.7810 -3.4700 20 1 12.8788 -2.2206 -3.8344 21 1 13.9792 -0.0894 -4.1922 22 1 13.0864 -0.6412 -2.0060 23 6 5.2123 0.1123 -1.1677 24 6 4.2229 0.0467 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 4.6276 2.7035 0.9383 29 1 3.3578 3.3702 -0.1181 30 1 5.6622 3.5305 -1.1238 31 1 4.5352 2.5683 -2.1110 32 1 6.5510 1.4345 -0.1184 33 1 7.3559 0.3301 -4.9221 34 1 9.0073 -0.0309 -5.4790 35 1 8.1625 -1.1689 -4.4018 36 1 11.8221 0.5057 -5.7729 37 1 4.6649 0.0950 -2.1100 38 1 5.8862 -0.7434 -1.1221 39 1 4.7706 -0.0278 0.9389 40 1 3.5756 -0.8226 -0.1160 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850843080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:11 Heat of formation + Delta-G solvation = -196.330154 kcal Electronic energy + Delta-G solvation = -23032.596219 eV Core-core repulsion = 19425.552260 eV Total energy + Delta-G solvation = -3607.043959 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.88935 -41.29243 -39.14927 -37.61149 -37.24971 -35.33758 -34.26887 -32.25484 -31.61569 -28.82315 -27.48068 -27.12641 -24.53220 -23.96310 -22.78819 -21.48815 -20.70261 -19.29586 -18.75671 -18.45546 -18.12584 -17.57214 -17.27668 -16.74554 -16.32812 -15.86761 -15.44842 -15.14275 -14.98644 -14.76192 -14.53518 -14.21279 -13.91839 -13.73509 -13.42514 -13.25569 -13.08465 -12.93152 -12.85259 -12.77796 -12.39785 -12.34679 -12.15421 -11.96367 -11.79302 -11.78211 -11.55949 -11.53247 -11.20921 -10.98498 -10.59263 -9.88236 -8.28276 -6.45382 1.13086 1.34489 1.43275 1.45283 1.56433 1.67023 2.01899 2.42453 2.90458 3.02664 3.53034 3.66609 3.80627 3.96250 4.20598 4.26111 4.29262 4.36839 4.38549 4.51542 4.63826 4.65839 4.69846 4.74131 4.76928 4.79015 4.83704 4.93283 5.07164 5.17941 5.21132 5.26395 5.40717 5.49425 5.63210 5.93022 6.10502 6.21162 6.60825 6.98033 7.15300 7.27112 8.79445 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036782 B = 0.003232 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.058590 B = 8661.130813 C = 8821.615603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.371 6.371 3 C 0.645 3.355 4 O -0.609 6.609 5 N -0.594 5.594 6 C 0.135 3.865 7 C -0.113 4.113 8 C -0.072 4.072 9 C 0.448 3.552 10 O -0.557 6.557 11 O -0.358 6.358 12 C 0.218 3.782 13 H 0.004 0.996 14 C -0.142 4.142 15 C -0.546 4.546 16 H 0.071 0.929 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.984 3.016 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.263 1.263 23 C -0.122 4.122 24 C 0.121 3.879 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.136 0.864 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.139 0.861 33 H 0.019 0.981 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.270 0.730 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.289 -3.430 13.347 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.285 6.285 3 C 0.400 3.600 4 O -0.501 6.501 5 N -0.334 5.334 6 C 0.014 3.986 7 C -0.151 4.151 8 C -0.091 4.091 9 C 0.293 3.707 10 O -0.449 6.449 11 O -0.274 6.274 12 C 0.164 3.836 13 H 0.022 0.978 14 C -0.200 4.200 15 C -0.584 4.584 16 H 0.089 0.911 17 C -0.185 4.185 18 N -0.557 5.557 19 Si 0.807 3.193 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.187 1.187 23 C -0.160 4.160 24 C -0.001 4.001 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.154 0.846 28 H 0.126 0.874 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.447 -2.893 12.920 21.114 hybrid contribution 0.758 0.217 -0.778 1.108 sum -15.688 -2.676 12.142 20.018 Atomic orbital electron populations 1.23487 0.72933 1.05594 1.02437 1.86240 1.25640 1.29876 1.86700 1.18236 0.83571 0.82237 0.75937 1.90957 1.65080 1.36149 1.57900 1.47153 1.01684 1.09647 1.74948 1.21712 0.94513 0.83373 0.98962 1.21787 0.96542 0.97661 0.99131 1.21185 0.93121 0.98705 0.96113 1.24558 0.81055 0.78884 0.86189 1.90586 1.72585 1.36764 1.44915 1.86464 1.41132 1.48457 1.51321 1.20300 0.85878 0.95716 0.81679 0.97833 1.21979 0.98370 0.99211 1.00391 1.21319 0.95436 1.40020 1.01611 0.91072 1.25862 1.02926 0.95315 0.94433 1.70026 1.33997 1.44858 1.06850 0.85166 0.76925 0.78475 0.78754 1.19190 1.20576 1.18689 1.21899 0.98057 0.96326 0.99726 1.21900 0.93124 0.86050 0.98983 0.91830 0.92540 0.84605 0.87407 0.88954 0.89259 0.92822 0.84372 0.96153 0.90268 0.93305 0.92060 0.92512 0.87995 0.87533 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.67 10.56 113.37 1.20 1.87 16 2 O -0.37 -7.34 9.20 -55.46 -0.51 -7.85 16 3 C 0.65 15.65 8.43 129.79 1.09 16.74 16 4 O -0.61 -18.43 15.55 19.82 0.31 -18.12 16 5 N -0.59 -12.12 2.97 -949.32 -2.82 -14.94 16 6 C 0.14 2.60 6.43 86.36 0.56 3.15 16 7 C -0.11 -2.73 4.65 30.67 0.14 -2.59 16 8 C -0.07 -1.87 2.59 -11.51 -0.03 -1.90 16 9 C 0.45 17.96 7.23 71.23 0.51 18.48 16 10 O -0.56 -26.50 15.20 21.97 0.33 -26.16 16 11 O -0.36 -16.46 9.74 -51.43 -0.50 -16.96 16 12 C 0.22 11.83 2.56 29.85 0.08 11.90 16 13 H 0.00 0.24 7.16 -2.38 -0.02 0.22 16 14 C -0.14 -7.29 9.33 71.98 0.67 -6.61 16 15 C -0.55 -30.48 8.90 25.60 0.23 -30.25 16 16 H 0.07 3.84 7.81 -2.91 -0.02 3.81 16 17 C 0.01 0.77 5.30 84.65 0.45 1.22 16 18 N -0.92 -52.71 11.32 21.45 0.24 -52.47 16 19 Si 0.98 42.17 29.54 68.60 2.03 44.19 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 23 C -0.12 -2.63 5.30 30.66 0.16 -2.47 16 24 C 0.12 1.91 6.45 86.35 0.56 2.47 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.99 7.01 -2.39 -0.02 1.97 16 30 H 0.09 2.18 8.07 -2.39 -0.02 2.16 16 31 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 32 H 0.14 2.78 8.14 -2.38 -0.02 2.76 16 33 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 4.39 6.07 -2.39 -0.01 4.38 16 35 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 36 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 38 H 0.10 2.16 8.08 -2.38 -0.02 2.14 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.11 1.54 6.92 -2.39 -0.02 1.52 16 Total: -1.00 -73.48 333.39 5.73 -67.75 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 1.03 Total: 12.56 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 5.62 Total: 12.01 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -2.58 Total: -67.41 kcal Atomic # 8 Polarization: -68.73 SS G_CDS: -0.37 Total: -69.10 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -73.48 5.73 -67.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850843080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.580 kcal (2) G-P(sol) polarization free energy of solvation -73.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds