Wall clock time and date at job start Tue Mar 31 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34636 * 117.00407 * 2 1 4 4 O 1.21518 * 119.99451 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00500 * 179.97438 * 3 2 1 6 6 C 1.46926 * 120.63302 * 180.02562 * 5 3 2 7 7 C 1.53191 * 108.89109 * 233.67613 * 6 5 3 8 8 C 1.53035 * 109.31327 * 305.29292 * 7 6 5 9 9 C 1.50703 * 109.45970 * 181.38844 * 8 7 6 10 10 O 1.20825 * 119.99869 * 359.97438 * 9 8 7 11 11 O 1.34233 * 119.99852 * 180.02562 * 9 8 7 12 12 C 1.45202 * 116.99642 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.47133 * 329.99336 * 12 11 9 14 14 C 1.52989 * 109.47501 * 89.99767 * 12 11 9 15 15 C 1.50704 * 109.46799 * 209.99724 * 12 11 9 16 16 H 1.08007 * 119.99998 * 359.97438 * 15 12 11 17 17 C 1.37876 * 119.99924 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00116 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99786 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47325 * 90.00289 * 19 17 15 21 21 H 1.48507 * 109.46983 * 210.00365 * 19 17 15 22 22 H 1.48501 * 109.47177 * 330.00008 * 19 17 15 23 23 C 1.53038 * 109.54175 * 61.36680 * 8 7 6 24 24 C 1.47207 * 120.81153 * 0.14069 * 5 3 2 25 25 H 1.08998 * 109.46976 * 299.99901 * 1 2 3 26 26 H 1.09002 * 109.46865 * 59.99897 * 1 2 3 27 27 H 1.09007 * 109.46994 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.58861 * 113.81616 * 6 5 3 29 29 H 1.08996 * 109.58519 * 353.53507 * 6 5 3 30 30 H 1.09003 * 109.49975 * 65.24379 * 7 6 5 31 31 H 1.09004 * 109.49655 * 185.34207 * 7 6 5 32 32 H 1.09004 * 109.45942 * 301.34050 * 8 7 6 33 33 H 1.09004 * 109.47214 * 179.97438 * 14 12 11 34 34 H 1.09000 * 109.47435 * 299.99805 * 14 12 11 35 35 H 1.09005 * 109.47279 * 59.99659 * 14 12 11 36 36 H 0.97001 * 120.00230 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.49557 * 58.58503 * 23 8 7 38 38 H 1.09001 * 109.50153 * 178.64977 * 23 8 7 39 39 H 1.08996 * 109.53610 * 6.53712 * 24 5 3 40 40 H 1.09002 * 109.68003 * 246.23180 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0817 2.6133 -1.1663 8 6 6.0260 1.4128 -1.0714 9 6 7.0242 1.4689 -2.1991 10 8 6.9842 2.3755 -2.9968 11 8 7.9572 0.5111 -2.3178 12 6 8.8860 0.6297 -3.4276 13 1 8.3956 1.1353 -4.2595 14 6 10.1067 1.4396 -2.9867 15 6 9.3256 -0.7443 -3.8636 16 1 8.9453 -1.6191 -3.3570 17 6 10.2133 -0.8846 -4.9092 18 7 10.6768 0.1806 -5.5257 19 14 10.7576 -2.5877 -5.4502 20 1 9.8318 -3.0949 -6.4946 21 1 12.1344 -2.5154 -6.0020 22 1 10.7395 -3.5069 -4.2839 23 6 5.2180 0.1169 -1.1698 24 6 4.2284 0.0470 -0.0020 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.6271 2.7030 0.9408 29 1 3.3561 3.3688 -0.1146 30 1 4.5357 2.5731 -2.1088 31 1 5.6604 3.5359 -1.1196 32 1 6.5537 1.4403 -0.1180 33 1 10.8042 1.5282 -3.8197 34 1 9.7889 2.4334 -2.6713 35 1 10.5972 0.9340 -2.1548 36 1 11.3016 0.0819 -6.2611 37 1 4.6706 0.1002 -2.1123 38 1 5.8936 -0.7374 -1.1263 39 1 3.5833 -0.8234 -0.1211 40 1 4.7761 -0.0299 0.9373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850843083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:13 Heat of formation + Delta-G solvation = -175.766730 kcal Electronic energy + Delta-G solvation = -23032.510877 eV Core-core repulsion = 19426.358615 eV Total energy + Delta-G solvation = -3606.152262 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84617 -39.79106 -38.05221 -36.37862 -35.71398 -33.39931 -33.05450 -31.30100 -29.60344 -28.04943 -26.12366 -25.33090 -23.51514 -22.64332 -21.33272 -20.13488 -19.42918 -18.29890 -17.24003 -16.96052 -16.68876 -16.55423 -15.49842 -15.16496 -14.97430 -14.62100 -14.49168 -14.21655 -13.67417 -13.63786 -13.11556 -12.92988 -12.58065 -12.27226 -12.18748 -12.08587 -11.64906 -11.43701 -11.23624 -11.06701 -10.97190 -10.90832 -10.86461 -10.73610 -10.55104 -10.38277 -10.30460 -9.62818 -9.53675 -8.97588 -8.91600 -8.51441 -6.20573 -4.27753 1.96496 2.63731 2.95314 3.22845 3.28281 3.31823 3.58812 3.70901 4.30653 4.60295 4.64759 4.88133 4.92330 4.97676 5.00388 5.11995 5.12625 5.20996 5.29195 5.39657 5.52823 5.57765 5.66034 5.82822 5.91484 6.03862 6.13224 6.23737 6.30868 6.61896 6.85994 6.89310 7.12163 7.15210 7.57677 7.70582 7.91784 8.08452 8.11894 8.61339 8.86138 9.37937 10.86856 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.003501 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.545764 B = 7996.713009 C = 8679.181298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.650 3.350 4 O -0.576 6.576 5 N -0.594 5.594 6 C 0.128 3.872 7 C -0.120 4.120 8 C -0.083 4.083 9 C 0.455 3.545 10 O -0.520 6.520 11 O -0.355 6.355 12 C 0.215 3.785 13 H 0.046 0.954 14 C -0.155 4.155 15 C -0.521 4.521 16 H 0.069 0.931 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.912 3.088 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.271 1.271 23 C -0.127 4.127 24 C 0.114 3.886 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.015 0.985 35 H 0.037 0.963 36 H 0.266 0.734 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.612 -0.512 12.772 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.405 3.595 4 O -0.466 6.466 5 N -0.335 5.335 6 C 0.007 3.993 7 C -0.158 4.158 8 C -0.102 4.102 9 C 0.297 3.703 10 O -0.410 6.410 11 O -0.271 6.271 12 C 0.163 3.837 13 H 0.063 0.937 14 C -0.212 4.212 15 C -0.559 4.559 16 H 0.087 0.913 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.738 3.262 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.165 4.165 24 C -0.008 4.008 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.034 0.966 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.724 0.060 12.357 19.223 hybrid contribution 0.372 -0.694 -0.524 0.946 sum -14.353 -0.633 11.833 18.612 Atomic orbital electron populations 1.23186 0.74551 1.03414 1.02659 1.86237 1.24043 1.31053 1.87067 1.18018 0.83157 0.82109 0.76240 1.90983 1.64240 1.34965 1.56393 1.47068 1.01881 1.08906 1.75627 1.21714 0.95229 0.83636 0.98673 1.21848 0.96597 0.98108 0.99226 1.21002 0.94356 0.97170 0.97662 1.23247 0.81222 0.80505 0.85283 1.90602 1.72443 1.35176 1.42787 1.86472 1.40814 1.47255 1.52576 1.20624 0.83808 0.97474 0.81831 0.93671 1.22158 1.00762 0.96036 1.02285 1.21023 1.27071 0.91298 1.16516 0.91304 1.24896 0.95591 0.97835 0.95695 1.69898 1.31683 1.28475 1.22642 0.86277 0.77891 0.83072 0.78913 1.20401 1.20955 1.19565 1.21929 0.97940 0.97461 0.99208 1.21859 0.93558 0.86418 0.98953 0.91955 0.91876 0.87997 0.90602 0.88211 0.90369 0.89195 0.87640 0.88266 0.96562 0.94427 0.92384 0.90750 0.88352 0.88557 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -4.10 9.22 -40.31 -0.37 -4.47 16 3 C 0.65 8.47 8.43 54.05 0.46 8.92 16 4 O -0.58 -8.97 15.54 -19.29 -0.30 -9.27 16 5 N -0.59 -6.80 2.98 -178.31 -0.53 -7.33 16 6 C 0.13 1.37 6.42 -3.71 -0.02 1.34 16 7 C -0.12 -1.50 4.65 -26.61 -0.12 -1.62 16 8 C -0.08 -1.13 2.59 -91.73 -0.24 -1.37 16 9 C 0.45 9.05 7.23 36.01 0.26 9.31 16 10 O -0.52 -11.96 15.20 -18.75 -0.28 -12.24 16 11 O -0.36 -8.12 9.74 -39.27 -0.38 -8.50 16 12 C 0.21 5.70 2.56 -27.89 -0.07 5.62 16 13 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 14 C -0.15 -3.88 9.33 37.15 0.35 -3.54 16 15 C -0.52 -14.42 8.90 -34.44 -0.31 -14.72 16 16 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 19 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C -0.13 -1.53 5.30 -26.59 -0.14 -1.68 16 24 C 0.11 1.11 6.46 -3.54 -0.02 1.09 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 1.13 7.00 -51.93 -0.36 0.77 16 30 H 0.08 1.12 8.13 -51.93 -0.42 0.70 16 31 H 0.09 1.11 8.07 -51.93 -0.42 0.69 16 32 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.10 2.67 6.07 -51.93 -0.32 2.36 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.10 1.20 8.08 -51.93 -0.42 0.78 16 39 H 0.10 0.87 6.95 -51.93 -0.36 0.51 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 333.45 15.07 5.02 5.02 Total: -1.00 -33.07 333.45 -6.15 -39.22 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.02 Total: -0.19 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 1.11 Total: 6.47 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.10 Total: -31.84 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -1.34 Total: -34.48 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.07 -6.15 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850843083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.543 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds