Wall clock time and date at job start Tue Mar 31 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34636 * 117.00407 * 2 1 4 4 O 1.21518 * 119.99451 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00500 * 179.97438 * 3 2 1 6 6 C 1.46926 * 120.63302 * 180.02562 * 5 3 2 7 7 C 1.53191 * 108.89109 * 233.67613 * 6 5 3 8 8 C 1.53035 * 109.31327 * 305.29292 * 7 6 5 9 9 C 1.50703 * 109.45970 * 181.38844 * 8 7 6 10 10 O 1.20825 * 119.99869 * 359.97438 * 9 8 7 11 11 O 1.34233 * 119.99852 * 180.02562 * 9 8 7 12 12 C 1.45202 * 116.99642 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.47133 * 329.99336 * 12 11 9 14 14 C 1.52989 * 109.47501 * 89.99767 * 12 11 9 15 15 C 1.50704 * 109.46799 * 209.99724 * 12 11 9 16 16 H 1.08007 * 119.99998 * 359.97438 * 15 12 11 17 17 C 1.37876 * 119.99924 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00116 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99786 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47325 * 90.00289 * 19 17 15 21 21 H 1.48507 * 109.46983 * 210.00365 * 19 17 15 22 22 H 1.48501 * 109.47177 * 330.00008 * 19 17 15 23 23 C 1.53038 * 109.54175 * 61.36680 * 8 7 6 24 24 C 1.47207 * 120.81153 * 0.14069 * 5 3 2 25 25 H 1.08998 * 109.46976 * 299.99901 * 1 2 3 26 26 H 1.09002 * 109.46865 * 59.99897 * 1 2 3 27 27 H 1.09007 * 109.46994 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.58861 * 113.81616 * 6 5 3 29 29 H 1.08996 * 109.58519 * 353.53507 * 6 5 3 30 30 H 1.09003 * 109.49975 * 65.24379 * 7 6 5 31 31 H 1.09004 * 109.49655 * 185.34207 * 7 6 5 32 32 H 1.09004 * 109.45942 * 301.34050 * 8 7 6 33 33 H 1.09004 * 109.47214 * 179.97438 * 14 12 11 34 34 H 1.09000 * 109.47435 * 299.99805 * 14 12 11 35 35 H 1.09005 * 109.47279 * 59.99659 * 14 12 11 36 36 H 0.97001 * 120.00230 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.49557 * 58.58503 * 23 8 7 38 38 H 1.09001 * 109.50153 * 178.64977 * 23 8 7 39 39 H 1.08996 * 109.53610 * 6.53712 * 24 5 3 40 40 H 1.09002 * 109.68003 * 246.23180 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0817 2.6133 -1.1663 8 6 6.0260 1.4128 -1.0714 9 6 7.0242 1.4689 -2.1991 10 8 6.9842 2.3755 -2.9968 11 8 7.9572 0.5111 -2.3178 12 6 8.8860 0.6297 -3.4276 13 1 8.3956 1.1353 -4.2595 14 6 10.1067 1.4396 -2.9867 15 6 9.3256 -0.7443 -3.8636 16 1 8.9453 -1.6191 -3.3570 17 6 10.2133 -0.8846 -4.9092 18 7 10.6768 0.1806 -5.5257 19 14 10.7576 -2.5877 -5.4502 20 1 9.8318 -3.0949 -6.4946 21 1 12.1344 -2.5154 -6.0020 22 1 10.7395 -3.5069 -4.2839 23 6 5.2180 0.1169 -1.1698 24 6 4.2284 0.0470 -0.0020 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.6271 2.7030 0.9408 29 1 3.3561 3.3688 -0.1146 30 1 4.5357 2.5731 -2.1088 31 1 5.6604 3.5359 -1.1196 32 1 6.5537 1.4403 -0.1180 33 1 10.8042 1.5282 -3.8197 34 1 9.7889 2.4334 -2.6713 35 1 10.5972 0.9340 -2.1548 36 1 11.3016 0.0819 -6.2611 37 1 4.6706 0.1002 -2.1123 38 1 5.8936 -0.7374 -1.1263 39 1 3.5833 -0.8234 -0.1211 40 1 4.7761 -0.0299 0.9373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850843083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:12 Heat of formation + Delta-G solvation = -196.422550 kcal Electronic energy + Delta-G solvation = -23033.406581 eV Core-core repulsion = 19426.358615 eV Total energy + Delta-G solvation = -3607.047966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.87777 -41.28929 -39.13932 -37.60989 -37.24426 -35.33602 -34.26184 -32.24977 -31.59996 -28.82649 -27.47979 -27.12581 -24.51080 -24.00161 -22.74911 -21.47153 -20.72972 -19.29081 -18.79454 -18.38630 -18.11913 -17.58361 -17.30039 -16.73932 -16.33203 -15.85534 -15.43192 -15.13459 -15.00749 -14.77590 -14.51759 -14.12119 -13.98073 -13.75260 -13.42763 -13.18735 -13.14018 -12.93265 -12.86087 -12.77048 -12.37960 -12.34362 -12.14320 -11.96216 -11.78867 -11.75667 -11.59378 -11.53920 -11.21283 -10.96525 -10.59630 -9.88245 -8.28334 -6.45282 1.13072 1.34373 1.42952 1.44655 1.56356 1.67089 2.02111 2.42200 2.90131 3.02676 3.53261 3.66853 3.81103 3.96150 4.20094 4.26491 4.28977 4.36568 4.38334 4.52464 4.64928 4.65756 4.69442 4.73544 4.78332 4.79300 4.85517 4.92966 5.07815 5.18711 5.21570 5.26538 5.40507 5.49733 5.64161 5.93567 6.10689 6.21021 6.60822 6.98170 7.15248 7.27124 8.79371 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.003501 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.545764 B = 7996.713009 C = 8679.181298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.372 6.372 3 C 0.645 3.355 4 O -0.609 6.609 5 N -0.595 5.595 6 C 0.135 3.865 7 C -0.113 4.113 8 C -0.071 4.071 9 C 0.448 3.552 10 O -0.557 6.557 11 O -0.358 6.358 12 C 0.217 3.783 13 H 0.002 0.998 14 C -0.142 4.142 15 C -0.546 4.546 16 H 0.071 0.929 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.983 3.017 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.259 1.259 23 C -0.123 4.123 24 C 0.122 3.878 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.136 0.864 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.142 0.858 33 H 0.078 0.922 34 H 0.023 0.977 35 H 0.048 0.952 36 H 0.270 0.730 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.885 -2.258 14.687 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.285 6.285 3 C 0.400 3.600 4 O -0.501 6.501 5 N -0.335 5.335 6 C 0.014 3.986 7 C -0.151 4.151 8 C -0.090 4.090 9 C 0.293 3.707 10 O -0.449 6.449 11 O -0.274 6.274 12 C 0.164 3.836 13 H 0.020 0.980 14 C -0.200 4.200 15 C -0.584 4.584 16 H 0.089 0.911 17 C -0.185 4.185 18 N -0.557 5.557 19 Si 0.806 3.194 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.183 1.183 23 C -0.161 4.161 24 C 0.000 4.000 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.154 0.846 28 H 0.128 0.872 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.159 0.841 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.010 -1.698 14.293 20.796 hybrid contribution 0.384 -0.101 -1.149 1.216 sum -14.626 -1.799 13.143 19.746 Atomic orbital electron populations 1.23486 0.72938 1.05579 1.02439 1.86242 1.25642 1.29913 1.86696 1.18235 0.83568 0.82231 0.75940 1.90959 1.65058 1.36137 1.57940 1.47215 1.01659 1.09696 1.74919 1.21720 0.94535 0.83329 0.98996 1.21789 0.96547 0.97729 0.99064 1.21186 0.93116 0.98557 0.96170 1.24570 0.80938 0.79002 0.86208 1.90586 1.73181 1.36455 1.44636 1.86464 1.41253 1.48543 1.51112 1.20302 0.84437 0.97013 0.81872 0.97990 1.21980 0.99884 0.96412 1.01740 1.21323 1.27869 0.91728 1.17449 0.91079 1.25858 0.95261 1.02068 0.95358 1.70026 1.31944 1.30806 1.22942 0.85179 0.77523 0.77975 0.78728 1.19890 1.20252 1.18306 1.21913 0.98133 0.96449 0.99627 1.21953 0.92988 0.86036 0.98974 0.91778 0.92571 0.84638 0.87232 0.89021 0.93048 0.89056 0.84059 0.90302 0.95799 0.93270 0.92071 0.92818 0.88084 0.87514 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.69 10.56 113.37 1.20 1.89 16 2 O -0.37 -7.54 9.22 -55.45 -0.51 -8.05 16 3 C 0.65 15.89 8.43 129.79 1.09 16.98 16 4 O -0.61 -18.60 15.54 19.79 0.31 -18.29 16 5 N -0.59 -12.28 2.98 -948.46 -2.83 -15.11 16 6 C 0.13 2.58 6.42 86.36 0.55 3.14 16 7 C -0.11 -2.73 4.65 30.67 0.14 -2.58 16 8 C -0.07 -1.84 2.59 -11.51 -0.03 -1.87 16 9 C 0.45 17.92 7.23 71.24 0.52 18.44 16 10 O -0.56 -26.48 15.20 21.97 0.33 -26.15 16 11 O -0.36 -16.45 9.74 -51.45 -0.50 -16.95 16 12 C 0.22 11.79 2.56 29.85 0.08 11.87 16 13 H 0.00 0.14 7.16 -2.38 -0.02 0.12 16 14 C -0.14 -7.26 9.33 71.98 0.67 -6.59 16 15 C -0.55 -30.49 8.90 25.60 0.23 -30.27 16 16 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 17 C 0.01 0.77 5.30 84.65 0.45 1.21 16 18 N -0.92 -52.75 11.32 21.45 0.24 -52.51 16 19 Si 0.98 42.25 29.54 68.60 2.03 44.27 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 C -0.12 -2.75 5.30 30.69 0.16 -2.59 16 24 C 0.12 1.97 6.46 86.32 0.56 2.53 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.14 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.97 7.00 -2.39 -0.02 1.95 16 30 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 31 H 0.09 2.18 8.07 -2.39 -0.02 2.16 16 32 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.08 4.35 6.07 -2.38 -0.01 4.33 16 34 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 36 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.10 2.25 8.08 -2.39 -0.02 2.23 16 39 H 0.11 1.58 6.95 -2.39 -0.02 1.57 16 40 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -73.71 333.45 5.72 -68.00 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.03 Total: 12.62 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 5.62 Total: 12.17 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -2.59 Total: -67.62 kcal Atomic # 8 Polarization: -69.06 SS G_CDS: -0.37 Total: -69.44 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -73.71 5.72 -68.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850843083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.426 kcal (2) G-P(sol) polarization free energy of solvation -73.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds