Wall clock time and date at job start Tue Mar 31 2020 05:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37843 * 119.32718 * 2 1 4 4 C 1.39420 * 119.40972 * 179.97438 * 3 2 1 5 5 N 1.38602 * 120.91031 * 180.02562 * 4 3 2 6 6 C 1.46501 * 120.00180 * 359.97438 * 5 4 3 7 7 C 1.53002 * 109.46930 * 180.02562 * 6 5 4 8 8 C 1.47208 * 109.46627 * 180.02562 * 7 6 5 9 9 N 7.32483 * 104.26853 * 0.02562 * 2 1 3 10 10 C 1.40838 * 118.17773 * 359.97438 * 4 3 2 11 11 C 1.43196 * 120.67568 * 179.97438 * 10 4 3 12 12 N 4.81883 * 134.92796 * 359.97438 * 3 1 2 13 13 C 1.40461 * 118.64567 * 0.02562 * 10 4 3 14 14 N 1.38409 * 119.79228 * 179.97438 * 13 10 4 15 15 C 1.46498 * 119.99772 * 180.27829 * 14 13 10 16 16 C 1.50700 * 109.46769 * 179.72338 * 15 14 13 17 17 H 1.07997 * 120.00357 * 359.97438 * 16 15 14 18 18 C 1.37886 * 119.99789 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99860 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00087 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47186 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46905 * 119.99897 * 20 18 16 23 23 H 1.48494 * 109.47159 * 240.00164 * 20 18 16 24 24 N 1.32082 * 119.32114 * 180.23102 * 2 1 3 25 25 H 1.09000 * 109.47633 * 89.99661 * 1 2 3 26 26 H 1.09003 * 109.47592 * 210.00234 * 1 2 3 27 27 H 1.09006 * 109.46749 * 330.00073 * 1 2 3 28 28 H 1.08001 * 120.29677 * 359.95819 * 3 2 1 29 29 H 0.97000 * 119.99999 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.47152 * 300.00112 * 6 5 4 31 31 H 1.08994 * 109.47242 * 60.00387 * 6 5 4 32 32 H 1.09004 * 109.47267 * 299.99256 * 7 6 5 33 33 H 1.08994 * 109.47604 * 60.00243 * 7 6 5 34 34 H 0.97001 * 119.99783 * 359.97438 * 14 13 10 35 35 H 1.09004 * 109.46963 * 299.72132 * 15 14 13 36 36 H 1.08994 * 109.47567 * 59.72284 * 15 14 13 37 37 H 0.96999 * 120.00067 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1822 1.2018 0.0000 4 6 3.5764 1.2038 0.0005 5 7 4.2866 2.3940 0.0011 6 6 3.5726 3.6732 0.0005 7 6 4.5836 4.8216 0.0007 8 6 3.8660 6.1069 0.0007 9 7 3.3123 7.0989 0.0032 10 6 4.2432 -0.0367 0.0016 11 6 5.6739 -0.0971 0.0017 12 7 6.8090 -0.1450 0.0015 13 6 3.4763 -1.2135 0.0016 14 7 4.1071 -2.4455 0.0021 15 6 3.3116 -3.6756 -0.0041 16 6 4.2320 -4.8689 -0.0090 17 1 5.3024 -4.7253 -0.0081 18 6 3.7075 -6.1441 -0.0148 19 7 2.4040 -6.3190 -0.0165 20 14 4.8483 -7.6232 -0.0216 21 1 6.2593 -7.1601 -0.0190 22 1 4.5964 -8.4481 1.1872 23 1 4.5962 -8.4372 -1.2377 24 7 2.1538 -1.1516 -0.0046 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8901 0.5139 28 1 1.6360 2.1335 -0.0007 29 1 5.2565 2.3800 0.0018 30 1 2.9475 3.7400 -0.8899 31 1 2.9462 3.7400 0.8900 32 1 5.2090 4.7550 0.8910 33 1 5.2097 4.7546 -0.8890 34 1 5.0758 -2.4943 0.0021 35 1 2.6822 -3.7058 0.8853 36 1 2.6834 -3.6977 -0.8946 37 1 2.0350 -7.2160 -0.0209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853547549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:38 Heat of formation + Delta-G solvation = 83.490067 kcal Electronic energy + Delta-G solvation = -20640.703862 eV Core-core repulsion = 17417.688240 eV Total energy + Delta-G solvation = -3223.015622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.25386 -37.86283 -36.64888 -36.33344 -35.17429 -32.99363 -32.73587 -30.84202 -29.46825 -27.94576 -26.74094 -24.50162 -22.68129 -22.45551 -21.02634 -18.92433 -17.98028 -17.42425 -16.99919 -16.17022 -16.04914 -15.24349 -15.02863 -14.73599 -14.56113 -14.16963 -13.76853 -13.63342 -13.26985 -13.21919 -12.97111 -12.85176 -12.83504 -12.56665 -12.17586 -12.14939 -12.04021 -11.96938 -11.65018 -11.58806 -11.02181 -10.89368 -10.68200 -10.27652 -9.40171 -9.39612 -8.97350 -8.56471 -7.97408 -7.12665 -6.19282 -4.25361 1.22096 1.96954 2.18031 2.30700 2.84079 2.94719 3.23066 3.30731 3.34175 3.34455 3.66042 3.93192 4.22604 4.29990 4.32138 4.37960 4.45530 4.75943 4.82369 5.17604 5.17756 5.24590 5.27993 5.42615 5.54851 5.72115 5.82012 5.93801 6.08403 6.26877 6.54931 7.00081 7.04864 7.17836 7.33459 7.50209 7.56496 7.79576 7.85202 7.95117 8.31016 8.69828 8.93109 9.40429 10.90590 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026429 B = 0.003289 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.179420 B = 8512.119303 C = 9540.229795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.246 3.754 3 C -0.330 4.330 4 C 0.337 3.663 5 N -0.733 5.733 6 C 0.128 3.872 7 C -0.039 4.039 8 C 0.210 3.790 9 N -0.426 5.426 10 C -0.259 4.259 11 C 0.275 3.725 12 N -0.455 5.455 13 C 0.491 3.509 14 N -0.683 5.683 15 C 0.256 3.744 16 C -0.547 4.547 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.883 5.883 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.281 1.281 24 N -0.563 5.563 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.130 0.870 29 H 0.403 0.597 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.400 0.600 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 18.918 0.022 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 C -0.359 4.359 4 C 0.222 3.778 5 N -0.362 5.362 6 C 0.002 3.998 7 C -0.079 4.079 8 C -0.108 4.108 9 N -0.103 5.103 10 C -0.277 4.277 11 C -0.038 4.038 12 N -0.133 5.133 13 C 0.246 3.754 14 N -0.304 5.304 15 C 0.135 3.865 16 C -0.585 4.585 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.207 1.207 24 N -0.285 5.285 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.148 0.852 29 H 0.238 0.762 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.236 0.764 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.673 19.301 0.022 19.313 hybrid contribution 1.636 -0.537 -0.017 1.722 sum 0.962 18.765 0.005 18.789 Atomic orbital electron populations 1.20786 0.89129 1.03439 1.03194 1.20825 0.96291 0.86964 0.85555 1.20794 0.91120 0.99468 1.24488 1.17354 0.90926 0.83512 0.86001 1.44305 1.08475 1.02498 1.80884 1.21241 0.94062 0.80951 1.03532 1.19374 0.97312 0.84397 1.06811 1.28712 0.94088 0.94582 0.93463 1.81291 1.08621 1.11793 1.08596 1.15682 0.84749 0.92866 1.34384 1.25328 0.92194 0.94096 0.92187 1.81240 1.11828 1.06771 1.13470 1.18123 0.87824 0.84882 0.84611 1.45626 1.09339 1.03857 1.71595 1.19223 0.91042 0.77947 0.98278 1.21276 0.93157 0.90786 1.53288 0.92072 1.24891 0.95252 0.98970 0.94608 1.69969 1.10567 1.22605 1.48926 0.86388 0.80750 0.82201 0.77787 1.19679 1.20736 1.20732 1.67342 1.06513 1.28427 1.26232 0.90107 0.90009 0.90848 0.85190 0.76169 0.90439 0.90433 0.86521 0.86517 0.76417 0.94864 0.94857 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.15 36.01 0.37 -0.77 16 2 C 0.25 3.42 6.77 -82.63 -0.56 2.86 16 3 C -0.33 -3.74 8.97 -39.29 -0.35 -4.09 16 4 C 0.34 3.98 6.69 -83.38 -0.56 3.42 16 5 N -0.73 -5.75 5.64 -58.26 -0.33 -6.08 16 6 C 0.13 0.61 4.89 -4.04 -0.02 0.59 16 7 C -0.04 -0.11 5.82 -29.51 -0.17 -0.28 16 8 C 0.21 1.33 15.43 -20.76 -0.32 1.01 16 9 N -0.43 -4.23 18.54 42.16 0.78 -3.45 16 10 C -0.26 -3.94 5.80 -106.15 -0.62 -4.56 16 11 C 0.27 4.30 13.00 -22.47 -0.29 4.00 16 12 N -0.45 -7.61 18.54 41.84 0.78 -6.84 16 13 C 0.49 9.07 7.49 -155.10 -1.16 7.90 16 14 N -0.68 -14.37 5.61 -61.40 -0.34 -14.72 16 15 C 0.26 6.43 5.43 -5.19 -0.03 6.41 16 16 C -0.55 -14.74 9.28 -34.44 -0.32 -15.06 16 17 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 18 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 19 N -0.88 -25.19 13.29 55.43 0.74 -24.45 16 20 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 N -0.56 -10.23 9.44 -8.50 -0.08 -10.31 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 28 H 0.13 1.08 6.86 -52.49 -0.36 0.72 16 29 H 0.40 2.98 7.44 -40.82 -0.30 2.68 16 30 H 0.08 0.36 7.98 -51.93 -0.41 -0.06 16 31 H 0.08 0.36 7.98 -51.93 -0.41 -0.06 16 32 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.40 8.17 7.16 -40.82 -0.29 7.87 16 35 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 337.35 15.07 5.08 5.08 Total: -1.00 -32.30 337.35 -6.80 -39.10 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.27 Total: 2.66 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -4.13 Total: 3.15 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: 1.54 Total: -65.84 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.30 -6.80 -39.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853547549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.589 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds