Wall clock time and date at job start Tue Mar 31 2020 05:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37843 * 119.32718 * 2 1 4 4 C 1.39420 * 119.40972 * 179.97438 * 3 2 1 5 5 N 1.38602 * 120.91031 * 180.02562 * 4 3 2 6 6 C 1.46501 * 120.00180 * 359.97438 * 5 4 3 7 7 C 1.53002 * 109.46930 * 180.02562 * 6 5 4 8 8 C 1.47208 * 109.46627 * 180.02562 * 7 6 5 9 9 N 7.32483 * 104.26853 * 0.02562 * 2 1 3 10 10 C 1.40838 * 118.17773 * 359.97438 * 4 3 2 11 11 C 1.43196 * 120.67568 * 179.97438 * 10 4 3 12 12 N 4.81883 * 134.92796 * 359.97438 * 3 1 2 13 13 C 1.40461 * 118.64567 * 0.02562 * 10 4 3 14 14 N 1.38409 * 119.79228 * 179.97438 * 13 10 4 15 15 C 1.46498 * 119.99772 * 180.27829 * 14 13 10 16 16 C 1.50700 * 109.46769 * 179.72338 * 15 14 13 17 17 H 1.07997 * 120.00357 * 359.97438 * 16 15 14 18 18 C 1.37886 * 119.99789 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99860 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00087 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47186 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46905 * 119.99897 * 20 18 16 23 23 H 1.48494 * 109.47159 * 240.00164 * 20 18 16 24 24 N 1.32082 * 119.32114 * 180.23102 * 2 1 3 25 25 H 1.09000 * 109.47633 * 89.99661 * 1 2 3 26 26 H 1.09003 * 109.47592 * 210.00234 * 1 2 3 27 27 H 1.09006 * 109.46749 * 330.00073 * 1 2 3 28 28 H 1.08001 * 120.29677 * 359.95819 * 3 2 1 29 29 H 0.97000 * 119.99999 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.47152 * 300.00112 * 6 5 4 31 31 H 1.08994 * 109.47242 * 60.00387 * 6 5 4 32 32 H 1.09004 * 109.47267 * 299.99256 * 7 6 5 33 33 H 1.08994 * 109.47604 * 60.00243 * 7 6 5 34 34 H 0.97001 * 119.99783 * 359.97438 * 14 13 10 35 35 H 1.09004 * 109.46963 * 299.72132 * 15 14 13 36 36 H 1.08994 * 109.47567 * 59.72284 * 15 14 13 37 37 H 0.96999 * 120.00067 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1822 1.2018 0.0000 4 6 3.5764 1.2038 0.0005 5 7 4.2866 2.3940 0.0011 6 6 3.5726 3.6732 0.0005 7 6 4.5836 4.8216 0.0007 8 6 3.8660 6.1069 0.0007 9 7 3.3123 7.0989 0.0032 10 6 4.2432 -0.0367 0.0016 11 6 5.6739 -0.0971 0.0017 12 7 6.8090 -0.1450 0.0015 13 6 3.4763 -1.2135 0.0016 14 7 4.1071 -2.4455 0.0021 15 6 3.3116 -3.6756 -0.0041 16 6 4.2320 -4.8689 -0.0090 17 1 5.3024 -4.7253 -0.0081 18 6 3.7075 -6.1441 -0.0148 19 7 2.4040 -6.3190 -0.0165 20 14 4.8483 -7.6232 -0.0216 21 1 6.2593 -7.1601 -0.0190 22 1 4.5964 -8.4481 1.1872 23 1 4.5962 -8.4372 -1.2377 24 7 2.1538 -1.1516 -0.0046 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8901 0.5139 28 1 1.6360 2.1335 -0.0007 29 1 5.2565 2.3800 0.0018 30 1 2.9475 3.7400 -0.8899 31 1 2.9462 3.7400 0.8900 32 1 5.2090 4.7550 0.8910 33 1 5.2097 4.7546 -0.8890 34 1 5.0758 -2.4943 0.0021 35 1 2.6822 -3.7058 0.8853 36 1 2.6834 -3.6977 -0.8946 37 1 2.0350 -7.2160 -0.0209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853547549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:38 Heat of formation + Delta-G solvation = 61.696869 kcal Electronic energy + Delta-G solvation = -20641.648886 eV Core-core repulsion = 17417.688240 eV Total energy + Delta-G solvation = -3223.960646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38273 -38.56254 -37.61425 -37.49263 -36.50115 -34.76070 -33.63283 -32.14045 -30.36472 -29.22683 -28.25143 -25.39636 -24.23265 -23.63159 -22.13799 -20.03805 -19.01020 -18.67653 -18.06749 -17.43782 -16.68950 -16.57589 -16.27226 -15.90183 -15.85029 -15.08574 -14.75901 -14.64663 -14.36150 -14.33695 -14.24105 -14.08435 -13.95072 -13.75581 -13.52545 -13.07833 -12.98678 -12.85225 -12.78872 -12.62930 -12.46663 -12.38753 -12.21529 -11.56097 -11.41428 -10.87022 -10.45250 -10.17846 -8.89679 -8.52299 -8.27712 -6.41961 0.07759 0.86045 1.41298 1.41436 1.54461 1.65560 1.68762 1.84926 2.12305 2.16066 2.35290 2.60753 3.06190 3.11225 3.15989 3.23216 3.72543 3.88444 4.17860 4.21641 4.33850 4.41701 4.58365 4.82375 4.93355 4.96296 4.98733 5.00614 5.14774 5.20370 5.30517 5.41020 5.51333 5.66546 5.87652 6.16466 6.25849 6.47702 6.60070 6.65993 6.68799 6.76599 7.28018 7.58284 8.83635 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026429 B = 0.003289 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.179420 B = 8512.119303 C = 9540.229795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.226 3.774 3 C -0.306 4.306 4 C 0.347 3.653 5 N -0.715 5.715 6 C 0.121 3.879 7 C -0.030 4.030 8 C 0.243 3.757 9 N -0.495 5.495 10 C -0.263 4.263 11 C 0.287 3.713 12 N -0.475 5.475 13 C 0.471 3.529 14 N -0.702 5.702 15 C 0.285 3.715 16 C -0.564 4.564 17 H 0.064 0.936 18 C 0.014 3.986 19 N -0.919 5.919 20 Si 0.973 3.027 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 N -0.609 5.609 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.110 0.890 28 H 0.173 0.827 29 H 0.408 0.592 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.400 0.600 35 H 0.000 1.000 36 H 0.000 1.000 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 20.947 0.006 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.087 3.913 3 C -0.334 4.334 4 C 0.229 3.771 5 N -0.342 5.342 6 C -0.004 4.004 7 C -0.070 4.070 8 C -0.075 4.075 9 N -0.172 5.172 10 C -0.281 4.281 11 C -0.025 4.025 12 N -0.154 5.154 13 C 0.228 3.772 14 N -0.327 5.327 15 C 0.163 3.837 16 C -0.602 4.602 17 H 0.082 0.918 18 C -0.187 4.187 19 N -0.557 5.557 20 Si 0.797 3.203 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.200 1.200 24 N -0.333 5.333 25 H 0.110 0.890 26 H 0.080 0.920 27 H 0.128 0.872 28 H 0.190 0.810 29 H 0.244 0.756 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.235 0.765 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.050 21.458 0.006 21.458 hybrid contribution 1.377 -0.942 -0.013 1.669 sum 1.327 20.516 -0.007 20.559 Atomic orbital electron populations 1.20891 0.86987 1.04260 1.04135 1.21451 0.97805 0.86751 0.85268 1.21161 0.90885 1.00067 1.21256 1.17366 0.91278 0.83676 0.84809 1.44427 1.08882 1.02289 1.78562 1.21484 0.94563 0.79666 1.04640 1.19504 0.96707 0.81669 1.09071 1.29181 0.92557 0.94438 0.91312 1.81339 1.10771 1.14029 1.11095 1.15684 0.84309 0.93256 1.34890 1.25351 0.92142 0.93443 0.91558 1.81244 1.12363 1.07457 1.14350 1.18300 0.88528 0.84680 0.85693 1.45178 1.08742 1.03715 1.75088 1.18491 0.90431 0.79811 0.95004 1.21630 0.93551 0.91808 1.53223 0.91784 1.25838 0.96814 1.02052 0.93964 1.70091 1.12437 1.23524 1.49682 0.85280 0.78706 0.78237 0.78039 1.19007 1.20030 1.20022 1.67293 1.06801 1.31255 1.27941 0.88990 0.92013 0.87169 0.80989 0.75590 0.89348 0.89326 0.84259 0.84256 0.76496 0.98240 0.98225 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 10.15 71.24 0.72 -1.33 16 2 C 0.23 6.00 6.77 42.43 0.29 6.29 16 3 C -0.31 -5.87 8.97 22.46 0.20 -5.67 16 4 C 0.35 7.19 6.69 38.99 0.26 7.45 16 5 N -0.72 -8.25 5.64 -338.22 -1.91 -10.16 16 6 C 0.12 0.54 4.89 86.38 0.42 0.96 16 7 C -0.03 -0.03 5.82 28.79 0.17 0.14 16 8 C 0.24 2.30 15.43 89.44 1.38 3.68 16 9 N -0.49 -8.98 18.54 20.01 0.37 -8.60 16 10 C -0.26 -7.82 5.80 -20.86 -0.12 -7.95 16 11 C 0.29 8.78 13.00 88.33 1.15 9.93 16 12 N -0.48 -15.56 18.54 19.00 0.35 -15.21 16 13 C 0.47 17.93 7.49 133.59 1.00 18.93 16 14 N -0.70 -31.22 5.61 -348.15 -1.95 -33.17 16 15 C 0.29 15.33 5.43 85.63 0.47 15.80 16 16 C -0.56 -31.61 9.28 25.60 0.24 -31.37 16 17 H 0.06 3.46 7.60 -2.91 -0.02 3.44 16 18 C 0.01 0.77 5.46 84.66 0.46 1.24 16 19 N -0.92 -54.18 13.29 21.45 0.28 -53.89 16 20 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 N -0.61 -22.85 9.44 -180.82 -1.71 -24.56 16 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.11 1.29 8.07 -2.38 -0.02 1.27 16 28 H 0.17 1.85 6.86 -2.91 -0.02 1.83 16 29 H 0.41 4.41 7.44 -92.71 -0.69 3.72 16 30 H 0.09 0.32 7.98 -2.39 -0.02 0.30 16 31 H 0.09 0.32 7.98 -2.39 -0.02 0.30 16 32 H 0.14 -0.35 8.14 -2.38 -0.02 -0.36 16 33 H 0.14 -0.35 8.14 -2.39 -0.02 -0.36 16 34 H 0.40 17.15 7.16 -92.71 -0.66 16.49 16 35 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 36 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -75.53 337.35 3.88 -71.65 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -0.22 Total: 10.44 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 6.64 Total: 18.11 kcal Atomic # 7 Polarization: -141.03 SS G_CDS: -4.56 Total: -145.59 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -75.53 3.88 -71.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853547549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.344 kcal (2) G-P(sol) polarization free energy of solvation -75.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds