Wall clock time and date at job start Tue Mar 31 2020 06:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 C 1.52996 * 109.47148 * 239.99723 * 2 1 3 5 5 O 1.45203 * 109.46835 * 119.99317 * 2 1 3 6 6 C 1.34638 * 116.99636 * 60.00724 * 5 2 1 7 7 O 1.21510 * 120.00284 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99857 * 180.02562 * 6 5 2 9 9 C 1.46496 * 120.00196 * 179.97438 * 8 6 5 10 10 H 1.08999 * 112.90564 * 336.24587 * 9 8 6 11 11 C 1.53954 * 113.54045 * 107.50236 * 9 8 6 12 12 C 1.53777 * 87.02086 * 89.18905 * 11 9 8 13 13 H 1.09002 * 113.61088 * 270.76706 * 12 11 9 14 14 C 1.50695 * 113.61230 * 139.95543 * 12 11 9 15 15 O 1.21209 * 119.99895 * 260.85568 * 14 12 11 16 16 O 1.34314 * 120.00503 * 80.86350 * 14 12 11 17 17 C 1.34916 * 117.00261 * 179.97438 * 16 14 12 18 18 H 1.07999 * 120.00095 * 359.97438 * 17 16 14 19 19 C 1.38755 * 120.00017 * 179.97438 * 17 16 14 20 20 N 1.31442 * 120.00067 * 359.72773 * 19 17 16 21 21 Si 1.86800 * 120.00352 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46754 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46950 * 119.99996 * 21 19 17 24 24 H 1.48493 * 109.47725 * 240.00329 * 21 19 17 25 25 C 1.53777 * 87.17464 * 25.35901 * 12 11 9 26 26 H 1.08994 * 109.47083 * 300.00512 * 1 2 3 27 27 H 1.08999 * 109.46810 * 60.00668 * 1 2 3 28 28 H 1.09002 * 109.47200 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47245 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46771 * 299.99829 * 3 2 1 31 31 H 1.08999 * 109.47579 * 59.99364 * 3 2 1 32 32 H 1.09002 * 109.46993 * 300.00033 * 4 2 1 33 33 H 1.09003 * 109.47198 * 59.99799 * 4 2 1 34 34 H 1.09000 * 109.47178 * 180.02562 * 4 2 1 35 35 H 0.97007 * 119.99736 * 359.97438 * 8 6 5 36 36 H 1.09003 * 113.66575 * 334.65661 * 11 9 8 37 37 H 1.09004 * 113.60913 * 203.71062 * 11 9 8 38 38 H 0.97000 * 120.00405 * 180.02562 * 20 19 17 39 39 H 1.09001 * 113.60946 * 89.15917 * 25 12 11 40 40 H 1.08995 * 113.61509 * 219.97450 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6523 -1.9722 1.3384 7 8 0.9510 -2.5094 0.5041 8 7 2.0672 -2.6652 2.4174 9 6 1.6732 -4.0664 2.5839 10 1 0.7594 -4.3170 2.0451 11 6 2.8238 -5.0611 2.3458 12 6 3.1483 -4.9203 3.8423 13 1 3.8450 -4.1117 4.0637 14 6 3.5317 -6.2199 4.5017 15 8 2.7111 -6.8386 5.1444 16 8 4.7826 -6.6928 4.3775 17 6 5.0599 -7.8610 4.9929 18 1 4.2912 -8.3715 5.5541 19 6 6.3326 -8.4066 4.9048 20 7 7.2667 -7.7881 4.2174 21 14 6.7168 -10.0237 5.7575 22 1 5.5016 -10.5165 6.4545 23 1 7.1487 -11.0246 4.7490 24 1 7.8050 -9.8158 6.7461 25 6 1.6736 -4.5364 4.0481 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1301 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7217 -1.2489 35 1 2.6267 -2.2362 3.0836 36 1 3.6060 -4.6768 1.6912 37 1 2.4870 -6.0588 2.0640 38 1 8.1564 -8.1697 4.1555 39 1 1.0219 -5.3904 4.2327 40 1 1.5285 -3.7301 4.7671 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853950620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:41 Heat of formation + Delta-G solvation = -146.100169 kcal Electronic energy + Delta-G solvation = -22614.746828 eV Core-core repulsion = 19009.881005 eV Total energy + Delta-G solvation = -3604.865824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95605 -39.76548 -38.22406 -36.76488 -35.02323 -34.36822 -32.85460 -32.11755 -27.63299 -27.56836 -26.83304 -25.55160 -24.86394 -22.87597 -20.78690 -20.22181 -18.84778 -18.38544 -17.71334 -16.83069 -16.53305 -16.20350 -15.52113 -15.07279 -14.76011 -14.56184 -14.49168 -14.36159 -13.76511 -13.49982 -12.86856 -12.74433 -12.62191 -12.31123 -12.17768 -12.10698 -12.08990 -11.80945 -11.60749 -11.49463 -11.21500 -11.21139 -10.61586 -10.54195 -10.49925 -10.37367 -10.24459 -10.11232 -9.76473 -9.22081 -8.89547 -8.57491 -6.40458 -4.08205 2.06114 2.77054 3.09533 3.19465 3.26900 3.49684 3.94484 4.02608 4.50352 4.52761 4.54917 4.59810 4.69005 4.71202 5.00481 5.19405 5.23616 5.30459 5.31786 5.35298 5.46282 5.54227 5.65343 5.66416 5.76031 5.83899 5.96206 6.04292 6.09207 6.12873 6.16125 6.24234 6.41680 6.59957 6.83105 7.37710 7.40730 7.96323 8.33089 8.72645 9.08668 9.88102 10.77591 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036006 B = 0.002942 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.466192 B = 9514.349977 C = 9917.054635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.185 4.185 5 O -0.366 6.366 6 C 0.653 3.347 7 O -0.568 6.568 8 N -0.691 5.691 9 C 0.134 3.866 10 H 0.111 0.889 11 C -0.131 4.131 12 C -0.099 4.099 13 H 0.110 0.890 14 C 0.406 3.594 15 O -0.556 6.556 16 O -0.213 6.213 17 C -0.382 4.382 18 H 0.095 0.905 19 C 0.041 3.959 20 N -0.865 5.865 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.120 4.120 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.407 0.593 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.269 0.731 39 H 0.112 0.888 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 16.702 -8.022 20.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.242 4.242 5 O -0.281 6.281 6 C 0.406 3.594 7 O -0.457 6.457 8 N -0.349 5.349 9 C 0.030 3.970 10 H 0.129 0.871 11 C -0.170 4.170 12 C -0.118 4.118 13 H 0.128 0.872 14 C 0.252 3.748 15 O -0.454 6.454 16 O -0.120 6.120 17 C -0.458 4.458 18 H 0.113 0.887 19 C -0.163 4.163 20 N -0.502 5.502 21 Si 0.766 3.234 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.158 4.158 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.242 0.758 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.139 16.312 -8.390 20.959 hybrid contribution 0.667 -0.553 0.692 1.109 sum -9.471 15.759 -7.698 19.933 Atomic orbital electron populations 1.22519 0.94044 1.05135 1.02356 1.22056 0.94317 0.91484 0.82196 1.21862 1.02355 0.92570 1.03014 1.22524 1.01711 1.03601 0.96330 1.86305 1.71612 1.23735 1.46418 1.18046 0.78738 0.80353 0.82251 1.90891 1.41264 1.70463 1.43115 1.44453 1.55047 1.11881 1.23474 1.21941 0.98916 0.78011 0.98137 0.87099 1.23378 0.98349 1.00263 0.94968 1.22250 0.97514 0.95363 0.96721 0.87200 1.22916 0.82399 0.87642 0.81834 1.90541 1.51856 1.60441 1.42555 1.83888 1.27605 1.37138 1.63322 1.21274 0.97290 0.96505 1.30770 0.88699 1.25335 0.94489 0.99489 0.96944 1.70002 1.03185 1.38675 1.38351 0.85635 0.78847 0.80115 0.78787 1.18963 1.20184 1.20189 1.23281 0.95965 1.01995 0.94597 0.92229 0.91232 0.89287 0.91400 0.90212 0.91505 0.89242 0.91235 0.92064 0.75754 0.90098 0.88313 0.92164 0.86930 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 2 C 0.14 1.34 1.13 -90.62 -0.10 1.24 16 3 C -0.14 -1.01 8.85 37.16 0.33 -0.68 16 4 C -0.18 -1.83 8.37 37.16 0.31 -1.52 16 5 O -0.37 -4.39 9.94 -40.32 -0.40 -4.79 16 6 C 0.65 8.70 8.06 54.05 0.44 9.13 16 7 O -0.57 -8.66 11.48 -19.28 -0.22 -8.88 16 8 N -0.69 -8.31 5.26 -57.85 -0.30 -8.62 16 9 C 0.13 1.75 4.33 -67.03 -0.29 1.46 16 10 H 0.11 1.47 7.47 -51.93 -0.39 1.08 16 11 C -0.13 -2.02 7.44 -25.83 -0.19 -2.21 16 12 C -0.10 -1.71 4.13 -90.97 -0.38 -2.08 16 13 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 14 C 0.41 9.79 7.43 36.00 0.27 10.05 16 15 O -0.56 -14.61 15.15 -19.05 -0.29 -14.90 16 16 O -0.21 -6.07 9.75 -20.70 -0.20 -6.27 16 17 C -0.38 -11.32 9.65 30.92 0.30 -11.03 16 18 H 0.10 2.84 6.86 -52.49 -0.36 2.48 16 19 C 0.04 1.17 5.49 -17.53 -0.10 1.07 16 20 N -0.87 -25.43 13.67 55.48 0.76 -24.67 16 21 Si 0.94 21.36 29.55 -169.99 -5.02 16.34 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 C -0.12 -1.68 7.14 -25.92 -0.19 -1.87 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 1.05 5.88 -51.93 -0.31 0.74 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 1.11 5.88 -51.93 -0.31 0.80 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.41 4.16 8.81 -40.82 -0.36 3.80 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.10 1.59 8.09 -51.93 -0.42 1.17 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 39 H 0.11 1.71 7.45 -51.93 -0.39 1.32 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 336.68 15.07 5.07 5.07 Total: -1.00 -34.16 336.68 -5.78 -39.94 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.89 Total: 4.60 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 0.71 Total: 2.17 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.45 Total: -33.29 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.11 Total: -34.84 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.16 -5.78 -39.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853950620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.156 kcal (2) G-P(sol) polarization free energy of solvation -34.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds