Wall clock time and date at job start Tue Mar 31 2020 06:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 C 1.52996 * 109.47148 * 239.99723 * 2 1 3 5 5 O 1.45203 * 109.46835 * 119.99317 * 2 1 3 6 6 C 1.34638 * 116.99636 * 60.00724 * 5 2 1 7 7 O 1.21510 * 120.00284 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99857 * 180.02562 * 6 5 2 9 9 C 1.46496 * 120.00196 * 179.97438 * 8 6 5 10 10 H 1.08999 * 112.90564 * 336.24587 * 9 8 6 11 11 C 1.53954 * 113.54045 * 107.50236 * 9 8 6 12 12 C 1.53777 * 87.02086 * 89.18905 * 11 9 8 13 13 H 1.09002 * 113.61088 * 270.76706 * 12 11 9 14 14 C 1.50695 * 113.61230 * 139.95543 * 12 11 9 15 15 O 1.21209 * 119.99895 * 260.85568 * 14 12 11 16 16 O 1.34314 * 120.00503 * 80.86350 * 14 12 11 17 17 C 1.34916 * 117.00261 * 179.97438 * 16 14 12 18 18 H 1.07999 * 120.00095 * 359.97438 * 17 16 14 19 19 C 1.38755 * 120.00017 * 179.97438 * 17 16 14 20 20 N 1.31442 * 120.00067 * 359.72773 * 19 17 16 21 21 Si 1.86800 * 120.00352 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46754 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46950 * 119.99996 * 21 19 17 24 24 H 1.48493 * 109.47725 * 240.00329 * 21 19 17 25 25 C 1.53777 * 87.17464 * 25.35901 * 12 11 9 26 26 H 1.08994 * 109.47083 * 300.00512 * 1 2 3 27 27 H 1.08999 * 109.46810 * 60.00668 * 1 2 3 28 28 H 1.09002 * 109.47200 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47245 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46771 * 299.99829 * 3 2 1 31 31 H 1.08999 * 109.47579 * 59.99364 * 3 2 1 32 32 H 1.09002 * 109.46993 * 300.00033 * 4 2 1 33 33 H 1.09003 * 109.47198 * 59.99799 * 4 2 1 34 34 H 1.09000 * 109.47178 * 180.02562 * 4 2 1 35 35 H 0.97007 * 119.99736 * 359.97438 * 8 6 5 36 36 H 1.09003 * 113.66575 * 334.65661 * 11 9 8 37 37 H 1.09004 * 113.60913 * 203.71062 * 11 9 8 38 38 H 0.97000 * 120.00405 * 180.02562 * 20 19 17 39 39 H 1.09001 * 113.60946 * 89.15917 * 25 12 11 40 40 H 1.08995 * 113.61509 * 219.97450 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6523 -1.9722 1.3384 7 8 0.9510 -2.5094 0.5041 8 7 2.0672 -2.6652 2.4174 9 6 1.6732 -4.0664 2.5839 10 1 0.7594 -4.3170 2.0451 11 6 2.8238 -5.0611 2.3458 12 6 3.1483 -4.9203 3.8423 13 1 3.8450 -4.1117 4.0637 14 6 3.5317 -6.2199 4.5017 15 8 2.7111 -6.8386 5.1444 16 8 4.7826 -6.6928 4.3775 17 6 5.0599 -7.8610 4.9929 18 1 4.2912 -8.3715 5.5541 19 6 6.3326 -8.4066 4.9048 20 7 7.2667 -7.7881 4.2174 21 14 6.7168 -10.0237 5.7575 22 1 5.5016 -10.5165 6.4545 23 1 7.1487 -11.0246 4.7490 24 1 7.8050 -9.8158 6.7461 25 6 1.6736 -4.5364 4.0481 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1301 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7217 -1.2489 35 1 2.6267 -2.2362 3.0836 36 1 3.6060 -4.6768 1.6912 37 1 2.4870 -6.0588 2.0640 38 1 8.1564 -8.1697 4.1555 39 1 1.0219 -5.3904 4.2327 40 1 1.5285 -3.7301 4.7671 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853950620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:40 Heat of formation + Delta-G solvation = -169.123411 kcal Electronic energy + Delta-G solvation = -22615.745191 eV Core-core repulsion = 19009.881005 eV Total energy + Delta-G solvation = -3605.864186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.01616 -41.30520 -39.77403 -37.87332 -36.99946 -35.28866 -34.30050 -33.88078 -28.54142 -28.31926 -28.25226 -26.80061 -26.69992 -23.97324 -22.35021 -21.15027 -20.23951 -19.87945 -19.41091 -18.49925 -17.56361 -17.20293 -16.88335 -16.72938 -16.35147 -16.23654 -15.60553 -15.37251 -15.02542 -14.68611 -14.33956 -13.86706 -13.73014 -13.52338 -13.32024 -13.12439 -13.01293 -12.87428 -12.82615 -12.80878 -12.48470 -12.37646 -12.27743 -12.19812 -12.00293 -11.71954 -11.60134 -11.35707 -11.09301 -10.93148 -10.69981 -10.21490 -8.54157 -6.33843 1.12066 1.29090 1.33967 1.52269 1.63033 1.74437 2.12121 2.78898 2.96180 3.11980 3.35646 3.46235 3.75280 3.79148 3.84554 3.98880 4.02527 4.40459 4.55716 4.65633 4.66094 4.68730 4.74863 4.81064 4.84517 4.89798 4.90813 4.92181 4.93098 5.01714 5.17565 5.19415 5.32848 5.35880 5.45136 5.61281 5.83604 6.40039 6.68313 6.91494 7.34283 7.79392 8.66729 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036006 B = 0.002942 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.466192 B = 9514.349977 C = 9917.054635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.182 4.182 5 O -0.368 6.368 6 C 0.651 3.349 7 O -0.590 6.590 8 N -0.683 5.683 9 C 0.157 3.843 10 H 0.115 0.885 11 C -0.131 4.131 12 C -0.102 4.102 13 H 0.132 0.868 14 C 0.404 3.596 15 O -0.581 6.581 16 O -0.245 6.245 17 C -0.420 4.420 18 H 0.081 0.919 19 C -0.005 4.005 20 N -0.903 5.903 21 Si 1.016 2.984 22 H -0.265 1.265 23 H -0.261 1.261 24 H -0.259 1.259 25 C -0.106 4.106 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.418 0.582 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.278 0.722 39 H 0.101 0.899 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 18.015 -8.132 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.239 4.239 5 O -0.283 6.283 6 C 0.404 3.596 7 O -0.480 6.480 8 N -0.342 5.342 9 C 0.052 3.948 10 H 0.132 0.868 11 C -0.170 4.170 12 C -0.121 4.121 13 H 0.150 0.850 14 C 0.252 3.748 15 O -0.479 6.479 16 O -0.153 6.153 17 C -0.496 4.496 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.541 5.541 21 Si 0.835 3.165 22 H -0.189 1.189 23 H -0.185 1.185 24 H -0.184 1.184 25 C -0.144 4.144 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.255 0.745 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.335 17.666 -8.502 22.163 hybrid contribution 0.657 -0.869 0.665 1.277 sum -9.678 16.797 -7.837 20.910 Atomic orbital electron populations 1.22472 0.93722 1.03756 1.03682 1.22439 0.94778 0.92672 0.81344 1.21889 1.02367 0.90625 1.04410 1.22491 1.01556 1.02291 0.97565 1.86323 1.71571 1.22890 1.47483 1.18174 0.78477 0.80808 0.82092 1.90894 1.42194 1.71037 1.43892 1.44337 1.55012 1.11297 1.23576 1.21608 0.97792 0.78076 0.97277 0.86750 1.23397 0.99442 1.00678 0.93533 1.22575 0.99982 0.92169 0.97385 0.85029 1.24294 0.80840 0.89045 0.80587 1.90507 1.52123 1.61775 1.43520 1.83916 1.29914 1.37237 1.64265 1.21443 0.98003 0.97740 1.32447 0.90174 1.26525 0.93580 1.03285 0.97139 1.70081 1.03903 1.40683 1.39390 0.84589 0.78859 0.74992 0.78061 1.18873 1.18540 1.18381 1.23214 0.92917 1.02362 0.95898 0.91763 0.89069 0.91914 0.91409 0.87903 0.91027 0.91998 0.88984 0.92224 0.74472 0.89986 0.89428 0.91260 0.88056 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 8.37 71.98 0.60 -2.47 16 2 C 0.12 2.23 1.13 -10.79 -0.01 2.21 16 3 C -0.14 -1.58 8.85 71.98 0.64 -0.95 16 4 C -0.18 -3.39 8.37 71.98 0.60 -2.78 16 5 O -0.37 -8.28 9.94 -55.48 -0.55 -8.84 16 6 C 0.65 16.60 8.06 129.79 1.05 17.65 16 7 O -0.59 -17.70 11.48 19.81 0.23 -17.47 16 8 N -0.68 -15.27 5.26 -567.33 -2.99 -18.26 16 9 C 0.16 3.90 4.33 45.58 0.20 4.10 16 10 H 0.11 2.88 7.47 -2.39 -0.02 2.87 16 11 C -0.13 -4.02 7.44 31.18 0.23 -3.79 16 12 C -0.10 -3.46 4.13 -11.02 -0.05 -3.50 16 13 H 0.13 3.90 8.14 -2.39 -0.02 3.88 16 14 C 0.40 19.94 7.43 71.23 0.53 20.47 16 15 O -0.58 -31.27 15.15 20.78 0.31 -30.95 16 16 O -0.25 -14.46 9.75 14.89 0.15 -14.32 16 17 C -0.42 -25.70 9.65 67.94 0.66 -25.05 16 18 H 0.08 4.98 6.86 -2.91 -0.02 4.96 16 19 C -0.01 -0.30 5.49 84.87 0.47 0.17 16 20 N -0.90 -53.71 13.67 21.62 0.30 -53.41 16 21 Si 1.02 43.75 29.55 68.60 2.03 45.78 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 25 C -0.11 -2.80 7.14 31.12 0.22 -2.58 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.44 5.88 -2.39 -0.01 1.42 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 1.52 5.88 -2.39 -0.01 1.51 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.42 7.57 8.81 -92.70 -0.82 6.75 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 37 H 0.09 2.88 8.09 -2.38 -0.02 2.86 16 38 H 0.28 14.95 8.31 -92.71 -0.77 14.18 16 39 H 0.10 2.99 7.45 -2.39 -0.02 2.98 16 40 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -76.10 336.68 4.84 -71.26 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.24 Total: 22.73 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 5.13 Total: 3.48 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -2.69 Total: -71.67 kcal Atomic # 8 Polarization: -71.71 SS G_CDS: 0.14 Total: -71.58 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -76.10 4.84 -71.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853950620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.864 kcal (2) G-P(sol) polarization free energy of solvation -76.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds