Wall clock time and date at job start Tue Mar 31 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 110.50573 * 2 1 4 4 O 1.45202 * 109.46919 * 302.74633 * 3 2 1 5 5 C 1.34230 * 116.99836 * 180.02562 * 4 3 2 6 6 O 1.20833 * 119.99930 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00262 * 180.27336 * 5 4 3 8 8 C 1.52996 * 109.47491 * 179.72204 * 7 5 4 9 9 C 1.53003 * 109.47301 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47298 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47156 * 180.02562 * 10 9 8 12 12 H 1.07991 * 119.99776 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99589 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00551 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99753 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47014 * 89.99667 * 15 13 11 17 17 H 1.48500 * 109.47269 * 210.00262 * 15 13 11 18 18 H 1.48497 * 109.46899 * 330.00046 * 15 13 11 19 19 C 1.54093 * 110.56317 * 122.74333 * 2 1 3 20 20 O 1.45708 * 104.00868 * 118.72075 * 19 2 1 21 21 C 1.33774 * 109.47365 * 359.97438 * 20 19 2 22 22 O 1.21511 * 123.06536 * 180.02562 * 21 20 19 23 23 N 1.34005 * 113.85877 * 359.97438 * 21 20 19 24 24 H 1.08992 * 109.47328 * 60.00021 * 1 2 3 25 25 H 1.09005 * 109.46819 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47040 * 299.99452 * 1 2 3 27 27 H 1.08998 * 109.47242 * 182.74062 * 3 2 1 28 28 H 1.09004 * 109.46797 * 62.73879 * 3 2 1 29 29 H 1.09004 * 109.46801 * 299.72165 * 7 5 4 30 30 H 1.09000 * 109.47461 * 59.71633 * 7 5 4 31 31 H 1.09004 * 109.47066 * 299.99799 * 8 7 5 32 32 H 1.08994 * 109.47405 * 59.99969 * 8 7 5 33 33 H 1.08996 * 109.47187 * 300.00268 * 9 8 7 34 34 H 1.09008 * 109.46785 * 59.99617 * 9 8 7 35 35 H 1.09004 * 109.47392 * 300.00171 * 10 9 8 36 36 H 1.09008 * 109.46760 * 59.99946 * 10 9 8 37 37 H 0.97004 * 120.00287 * 179.97438 * 14 13 11 38 38 H 1.09005 * 110.51792 * 237.35191 * 19 2 1 39 39 H 1.08996 * 110.52341 * 0.08873 * 19 2 1 40 40 H 0.96996 * 125.55907 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0660 1.4330 0.0000 4 8 1.5419 2.1457 -1.1514 5 6 1.9194 3.4253 -1.2996 6 8 2.6627 3.9331 -0.4937 7 6 1.4108 4.2305 -2.4675 8 6 1.9826 5.6479 -2.3975 9 6 1.4667 6.4652 -3.5835 10 6 2.0380 7.8827 -3.5132 11 6 1.5294 8.6879 -4.6811 12 1 0.8654 8.2339 -5.4016 13 6 1.9126 10.0039 -4.8301 14 7 2.7215 10.5567 -3.9528 15 14 1.2827 11.0018 -6.2782 16 1 0.0129 11.6734 -5.9015 17 1 2.2923 12.0250 -6.6509 18 1 1.0420 10.1002 -7.4333 19 6 2.0713 -0.7803 1.2135 20 8 2.8312 -1.8727 0.6200 21 6 2.7709 -1.7850 -0.7135 22 8 3.3202 -2.5752 -1.4554 23 7 2.0485 -0.7468 -1.1563 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1547 1.4138 -0.0491 28 1 1.7523 1.9382 0.9136 29 1 1.7240 3.7579 -3.3985 30 1 0.3223 4.2756 -2.4313 31 1 1.6694 6.1204 -1.4664 32 1 3.0710 5.6028 -2.4338 33 1 1.7802 5.9925 -4.5143 34 1 0.3782 6.5103 -3.5476 35 1 1.7241 8.3552 -2.5823 36 1 3.1266 7.8379 -3.5488 37 1 2.9914 11.4825 -4.0579 38 1 2.7211 -0.1462 1.8166 39 1 1.2497 -1.1691 1.8151 40 1 1.8934 -0.5238 -2.0875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861005449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:53 Heat of formation + Delta-G solvation = -183.306292 kcal Electronic energy + Delta-G solvation = -21901.810520 eV Core-core repulsion = 18295.331318 eV Total energy + Delta-G solvation = -3606.479202 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.26780 -40.60570 -37.89547 -37.11434 -35.71167 -35.06928 -32.75648 -32.11404 -30.09077 -27.91113 -27.35292 -25.69372 -23.07612 -22.68858 -21.66482 -20.69681 -20.11509 -18.50838 -17.77312 -17.49266 -17.20733 -16.73108 -16.21853 -16.05831 -15.47937 -14.84421 -14.70867 -14.53841 -14.39436 -13.98377 -13.86745 -13.22255 -13.08812 -12.75138 -12.48630 -12.28214 -12.10544 -11.81473 -11.71979 -11.25960 -11.09927 -11.06040 -10.98429 -10.67662 -10.65691 -10.53970 -10.48962 -9.94107 -9.71633 -9.34602 -9.07072 -8.35700 -6.00434 -4.03272 2.09737 2.16416 2.22913 2.35881 2.95468 3.30888 3.37287 3.40270 3.47060 3.78986 3.93243 4.44763 4.47126 4.54749 4.62720 4.68510 4.82236 4.90655 5.09548 5.11700 5.15503 5.18311 5.35220 5.52931 5.59612 5.96348 6.07170 6.17043 6.34356 6.38123 6.68638 6.77587 6.86658 7.09740 7.60501 7.65931 7.67301 7.81339 7.99804 8.41412 9.04256 9.60885 11.10859 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.041920 B = 0.002254 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.773383 B =12422.028890 C =12556.555790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.123 3.877 3 C 0.062 3.938 4 O -0.357 6.357 5 C 0.462 3.538 6 O -0.501 6.501 7 C -0.111 4.111 8 C -0.109 4.109 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.051 3.949 20 O -0.326 6.326 21 C 0.646 3.354 22 O -0.521 6.521 23 N -0.721 5.721 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.092 -22.768 11.306 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.036 3.964 3 C -0.014 4.014 4 O -0.275 6.275 5 C 0.305 3.695 6 O -0.387 6.387 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.147 4.147 10 C -0.017 4.017 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.024 4.024 20 O -0.236 6.236 21 C 0.398 3.602 22 O -0.405 6.405 23 N -0.394 5.394 24 H 0.101 0.899 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -5.315 -23.112 11.547 26.377 hybrid contribution -0.347 0.969 -0.999 1.435 sum -5.663 -22.143 10.547 25.172 Atomic orbital electron populations 1.22139 0.90861 1.03561 1.04722 1.21770 0.97191 0.90929 0.86542 1.23339 0.99502 0.89579 0.88935 1.86493 1.68195 1.26477 1.46342 1.24292 0.78203 0.79702 0.87326 1.90698 1.33786 1.70606 1.43633 1.21634 1.03155 0.95921 0.94104 1.21592 1.01151 0.90877 1.01051 1.21651 0.99746 0.98257 0.95093 1.19097 0.96278 0.89228 0.97111 1.21261 1.28745 0.96221 1.09761 0.92688 1.25040 0.95173 0.97971 0.96364 1.69969 1.34495 1.13376 1.35620 0.86600 0.78558 0.79978 0.82890 1.20678 1.21232 1.19891 1.24393 0.96944 0.86695 0.94390 1.87300 1.68585 1.48549 1.19139 1.18504 0.78653 0.81577 0.81483 1.91105 1.50008 1.44769 1.54613 1.46121 1.54319 1.28815 1.10127 0.89917 0.91168 0.90213 0.90180 0.89146 0.87775 0.87732 0.91495 0.91515 0.93169 0.93177 0.96556 0.96545 0.92990 0.87015 0.86415 0.71622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 8.58 37.16 0.32 -0.24 16 2 C 0.12 0.64 1.18 -130.93 -0.15 0.48 16 3 C 0.06 0.43 4.47 37.15 0.17 0.59 16 4 O -0.36 -3.20 9.50 -39.26 -0.37 -3.57 16 5 C 0.46 5.49 7.96 36.00 0.29 5.78 16 6 O -0.50 -7.61 15.73 -18.76 -0.30 -7.91 16 7 C -0.11 -1.27 5.81 -27.89 -0.16 -1.44 16 8 C -0.11 -1.75 4.50 -26.73 -0.12 -1.87 16 9 C -0.11 -2.11 5.15 -26.73 -0.14 -2.25 16 10 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 11 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 15 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 19 C 0.05 0.21 7.53 37.73 0.28 0.50 16 20 O -0.33 -2.91 11.09 -37.84 -0.42 -3.33 16 21 C 0.65 6.87 9.16 53.71 0.49 7.37 16 22 O -0.52 -7.79 18.04 -19.12 -0.34 -8.13 16 23 N -0.72 -5.31 5.70 -52.02 -0.30 -5.61 16 24 H 0.08 0.37 7.68 -51.93 -0.40 -0.02 16 25 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.08 0.64 8.13 -51.93 -0.42 0.21 16 28 H 0.09 0.52 8.13 -51.93 -0.42 0.09 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.11 0.27 7.73 -51.93 -0.40 -0.13 16 39 H 0.12 0.18 7.73 -51.93 -0.40 -0.22 16 40 H 0.44 2.92 8.96 -40.82 -0.37 2.55 16 LS Contribution 343.84 15.07 5.18 5.18 Total: -1.00 -35.64 343.84 -6.59 -42.23 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -6.18 Total: -4.91 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 0.42 Total: -4.17 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.44 Total: -31.87 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -1.43 Total: -22.95 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.64 -6.59 -42.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861005449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.076 kcal (2) G-P(sol) polarization free energy of solvation -35.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds