Wall clock time and date at job start Tue Mar 31 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 110.50573 * 2 1 4 4 O 1.45202 * 109.46919 * 302.74633 * 3 2 1 5 5 C 1.34230 * 116.99836 * 180.02562 * 4 3 2 6 6 O 1.20833 * 119.99930 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00262 * 180.27336 * 5 4 3 8 8 C 1.52996 * 109.47491 * 179.72204 * 7 5 4 9 9 C 1.53003 * 109.47301 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47298 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47156 * 180.02562 * 10 9 8 12 12 H 1.07991 * 119.99776 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99589 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00551 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99753 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47014 * 89.99667 * 15 13 11 17 17 H 1.48500 * 109.47269 * 210.00262 * 15 13 11 18 18 H 1.48497 * 109.46899 * 330.00046 * 15 13 11 19 19 C 1.54093 * 110.56317 * 122.74333 * 2 1 3 20 20 O 1.45708 * 104.00868 * 118.72075 * 19 2 1 21 21 C 1.33774 * 109.47365 * 359.97438 * 20 19 2 22 22 O 1.21511 * 123.06536 * 180.02562 * 21 20 19 23 23 N 1.34005 * 113.85877 * 359.97438 * 21 20 19 24 24 H 1.08992 * 109.47328 * 60.00021 * 1 2 3 25 25 H 1.09005 * 109.46819 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47040 * 299.99452 * 1 2 3 27 27 H 1.08998 * 109.47242 * 182.74062 * 3 2 1 28 28 H 1.09004 * 109.46797 * 62.73879 * 3 2 1 29 29 H 1.09004 * 109.46801 * 299.72165 * 7 5 4 30 30 H 1.09000 * 109.47461 * 59.71633 * 7 5 4 31 31 H 1.09004 * 109.47066 * 299.99799 * 8 7 5 32 32 H 1.08994 * 109.47405 * 59.99969 * 8 7 5 33 33 H 1.08996 * 109.47187 * 300.00268 * 9 8 7 34 34 H 1.09008 * 109.46785 * 59.99617 * 9 8 7 35 35 H 1.09004 * 109.47392 * 300.00171 * 10 9 8 36 36 H 1.09008 * 109.46760 * 59.99946 * 10 9 8 37 37 H 0.97004 * 120.00287 * 179.97438 * 14 13 11 38 38 H 1.09005 * 110.51792 * 237.35191 * 19 2 1 39 39 H 1.08996 * 110.52341 * 0.08873 * 19 2 1 40 40 H 0.96996 * 125.55907 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0660 1.4330 0.0000 4 8 1.5419 2.1457 -1.1514 5 6 1.9194 3.4253 -1.2996 6 8 2.6627 3.9331 -0.4937 7 6 1.4108 4.2305 -2.4675 8 6 1.9826 5.6479 -2.3975 9 6 1.4667 6.4652 -3.5835 10 6 2.0380 7.8827 -3.5132 11 6 1.5294 8.6879 -4.6811 12 1 0.8654 8.2339 -5.4016 13 6 1.9126 10.0039 -4.8301 14 7 2.7215 10.5567 -3.9528 15 14 1.2827 11.0018 -6.2782 16 1 0.0129 11.6734 -5.9015 17 1 2.2923 12.0250 -6.6509 18 1 1.0420 10.1002 -7.4333 19 6 2.0713 -0.7803 1.2135 20 8 2.8312 -1.8727 0.6200 21 6 2.7709 -1.7850 -0.7135 22 8 3.3202 -2.5752 -1.4554 23 7 2.0485 -0.7468 -1.1563 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1547 1.4138 -0.0491 28 1 1.7523 1.9382 0.9136 29 1 1.7240 3.7579 -3.3985 30 1 0.3223 4.2756 -2.4313 31 1 1.6694 6.1204 -1.4664 32 1 3.0710 5.6028 -2.4338 33 1 1.7802 5.9925 -4.5143 34 1 0.3782 6.5103 -3.5476 35 1 1.7241 8.3552 -2.5823 36 1 3.1266 7.8379 -3.5488 37 1 2.9914 11.4825 -4.0579 38 1 2.7211 -0.1462 1.8166 39 1 1.2497 -1.1691 1.8151 40 1 1.8934 -0.5238 -2.0875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861005449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:53 Heat of formation + Delta-G solvation = -208.421822 kcal Electronic energy + Delta-G solvation = -21902.899611 eV Core-core repulsion = 18295.331318 eV Total energy + Delta-G solvation = -3607.568293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.89751 -41.50216 -38.73359 -37.96033 -36.67676 -36.32124 -34.65658 -32.73209 -31.65892 -28.57411 -27.97149 -27.12201 -24.49078 -23.56361 -22.26530 -21.98957 -21.43366 -19.14872 -18.65592 -18.37311 -18.19368 -17.92575 -17.53730 -16.92432 -16.48639 -16.35049 -15.85175 -15.28612 -15.09829 -14.75131 -14.59292 -14.41484 -14.11328 -13.77723 -13.57587 -13.46867 -13.31374 -12.89649 -12.82273 -12.48685 -12.35616 -12.18566 -12.17648 -11.96474 -11.80690 -11.72222 -11.61880 -11.37416 -11.29062 -11.05072 -10.56898 -10.54245 -8.18651 -6.30212 1.17901 1.41135 1.42898 1.43607 1.53758 1.54292 1.63297 2.42230 2.45762 3.03063 3.14612 3.26784 3.52576 3.81229 4.00851 4.02408 4.10102 4.16468 4.25209 4.40612 4.49403 4.58012 4.65628 4.81044 4.82088 4.85366 4.87829 5.15911 5.21063 5.28751 5.33256 5.40946 5.57551 5.70770 5.78878 5.89170 6.12592 6.26001 6.71470 6.88725 6.92744 7.39580 8.93425 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.041920 B = 0.002254 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.773383 B =12422.028890 C =12556.555790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.129 3.871 3 C 0.056 3.944 4 O -0.346 6.346 5 C 0.469 3.531 6 O -0.541 6.541 7 C -0.103 4.103 8 C -0.101 4.101 9 C -0.097 4.097 10 C 0.018 3.982 11 C -0.541 4.541 12 H 0.066 0.934 13 C -0.006 4.006 14 N -0.938 5.938 15 Si 0.967 3.033 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.260 1.260 19 C 0.047 3.953 20 O -0.341 6.341 21 C 0.644 3.356 22 O -0.576 6.576 23 N -0.711 5.711 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.065 0.935 35 H -0.012 1.012 36 H -0.015 1.015 37 H 0.263 0.737 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.286 -23.514 11.112 27.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.042 3.958 3 C -0.019 4.019 4 O -0.263 6.263 5 C 0.314 3.686 6 O -0.430 6.430 7 C -0.140 4.140 8 C -0.139 4.139 9 C -0.134 4.134 10 C -0.019 4.019 11 C -0.579 4.579 12 H 0.084 0.916 13 C -0.203 4.203 14 N -0.578 5.578 15 Si 0.791 3.209 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.184 1.184 19 C -0.027 4.027 20 O -0.251 6.251 21 C 0.397 3.603 22 O -0.464 6.464 23 N -0.383 5.383 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.145 0.855 30 H 0.151 0.849 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.006 0.994 36 H 0.004 0.996 37 H 0.071 0.929 38 H 0.149 0.851 39 H 0.170 0.830 40 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -7.554 -23.863 11.367 27.490 hybrid contribution 0.334 1.218 -0.840 1.517 sum -7.220 -22.645 10.527 25.995 Atomic orbital electron populations 1.22160 0.89042 1.04252 1.05483 1.21936 0.98347 0.89512 0.86024 1.23590 0.98997 0.90414 0.88852 1.86467 1.67591 1.25047 1.47165 1.24238 0.77299 0.80382 0.86712 1.90699 1.35654 1.71599 1.45084 1.21489 1.04527 0.92919 0.95052 1.21357 1.00084 0.93587 0.98903 1.21439 1.00257 0.94712 0.96994 1.19062 0.94554 0.93090 0.95209 1.21764 1.28731 0.96893 1.10503 0.91595 1.26056 0.95320 0.99487 0.99461 1.70119 1.35992 1.13854 1.37845 0.85421 0.78007 0.78204 0.79257 1.19686 1.21096 1.18421 1.24864 0.98050 0.85800 0.93969 1.87264 1.69309 1.50248 1.18251 1.18621 0.78335 0.81543 0.81784 1.91051 1.52314 1.46885 1.56164 1.46152 1.53203 1.27965 1.11005 0.90568 0.90541 0.88054 0.91407 0.87335 0.85524 0.84878 0.92898 0.93414 0.92046 0.91680 0.99407 0.99647 0.92877 0.85101 0.83030 0.71327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 8.58 71.98 0.62 0.03 16 2 C 0.13 1.00 1.18 3.86 0.00 1.01 16 3 C 0.06 0.65 4.47 71.98 0.32 0.97 16 4 O -0.35 -5.36 9.50 -51.41 -0.49 -5.85 16 5 C 0.47 10.31 7.96 71.23 0.57 10.88 16 6 O -0.54 -16.12 15.73 21.94 0.35 -15.77 16 7 C -0.10 -2.11 5.81 29.85 0.17 -1.94 16 8 C -0.10 -3.21 4.50 30.59 0.14 -3.07 16 9 C -0.10 -3.63 5.15 30.59 0.16 -3.47 16 10 C 0.02 0.94 4.97 29.85 0.15 1.09 16 11 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 12 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 13 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 14 N -0.94 -57.81 13.29 21.45 0.28 -57.53 16 15 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 19 C 0.05 0.26 7.53 72.35 0.54 0.80 16 20 O -0.34 -5.72 11.09 -47.34 -0.53 -6.24 16 21 C 0.64 13.56 9.16 129.91 1.19 14.75 16 22 O -0.58 -17.79 18.04 19.65 0.35 -17.43 16 23 N -0.71 -9.62 5.70 -550.19 -3.14 -12.76 16 24 H 0.08 0.45 7.68 -2.39 -0.02 0.43 16 25 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 26 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 28 H 0.11 0.93 8.13 -2.38 -0.02 0.91 16 29 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 1.80 8.10 -2.38 -0.02 1.78 16 32 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 33 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 35 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 36 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 37 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.13 0.24 7.73 -2.38 -0.02 0.22 16 39 H 0.15 -0.16 7.73 -2.39 -0.02 -0.18 16 40 H 0.44 5.41 8.96 -92.71 -0.83 4.58 16 Total: -1.00 -80.65 343.84 3.63 -77.03 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 0.21 Total: 1.65 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 4.56 Total: -9.05 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -2.85 Total: -70.28 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -0.31 Total: -45.30 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -80.65 3.63 -77.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861005449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.396 kcal (2) G-P(sol) polarization free energy of solvation -80.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds