Wall clock time and date at job start Tue Mar 31 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 110.50524 * 2 1 4 4 O 1.45201 * 109.46884 * 62.26166 * 3 2 1 5 5 C 1.34222 * 117.00137 * 179.97438 * 4 3 2 6 6 O 1.20833 * 119.99852 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00432 * 179.71953 * 5 4 3 8 8 C 1.52996 * 109.47298 * 180.27351 * 7 5 4 9 9 C 1.53005 * 109.46952 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.46953 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46969 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00300 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99923 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99871 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99961 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47345 * 59.99934 * 15 13 11 17 17 H 1.48502 * 109.47317 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47211 * 300.00171 * 15 13 11 19 19 C 1.54089 * 110.56490 * 237.26068 * 2 1 3 20 20 O 1.45702 * 104.00948 * 241.27908 * 19 2 1 21 21 C 1.33766 * 109.47553 * 0.02562 * 20 19 2 22 22 O 1.21517 * 123.07216 * 179.97438 * 21 20 19 23 23 N 1.34006 * 113.86062 * 359.97438 * 21 20 19 24 24 H 1.09001 * 109.47394 * 59.99770 * 1 2 3 25 25 H 1.08999 * 109.46912 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47260 * 299.99883 * 1 2 3 27 27 H 1.08997 * 109.46911 * 302.26125 * 3 2 1 28 28 H 1.08997 * 109.46745 * 182.26134 * 3 2 1 29 29 H 1.09000 * 109.47190 * 300.28287 * 7 5 4 30 30 H 1.09006 * 109.46468 * 60.27870 * 7 5 4 31 31 H 1.08994 * 109.47515 * 300.00215 * 8 7 5 32 32 H 1.09006 * 109.46938 * 60.00806 * 8 7 5 33 33 H 1.09000 * 109.47278 * 300.00777 * 9 8 7 34 34 H 1.08998 * 109.46882 * 60.00298 * 9 8 7 35 35 H 1.09008 * 109.47282 * 300.00004 * 10 9 8 36 36 H 1.08998 * 109.47408 * 60.00223 * 10 9 8 37 37 H 0.96999 * 119.99800 * 179.97438 * 14 13 11 38 38 H 1.09007 * 110.52307 * 359.91364 * 19 2 1 39 39 H 1.09006 * 110.52320 * 122.64619 * 19 2 1 40 40 H 0.96995 * 125.56127 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0659 1.4331 0.0000 4 8 1.6387 2.1096 1.2117 5 6 2.0285 3.3844 1.3676 6 8 2.7041 3.9177 0.5195 7 6 1.6180 4.1530 2.5972 8 6 2.1840 5.5725 2.5241 9 6 1.7677 6.3525 3.7728 10 6 2.3332 7.7722 3.6993 11 6 1.9236 8.5403 4.9295 12 1 1.3200 8.0636 5.6877 13 6 2.3196 9.8516 5.0872 14 7 3.0551 10.4318 4.1642 15 14 1.8114 10.8039 6.6117 16 1 2.3397 10.1218 7.8204 17 1 2.3604 12.1819 6.5405 18 1 0.3295 10.8652 6.6859 19 6 2.0712 -0.7802 -1.2135 20 8 2.8312 -1.8726 -0.6201 21 6 2.7709 -1.7850 0.7133 22 8 3.3202 -2.5752 1.4553 23 7 2.0493 -0.7463 1.1563 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6794 1.9655 -0.8690 28 1 3.1550 1.4137 -0.0405 29 1 0.5302 4.1978 2.6513 30 1 2.0056 3.6525 3.4846 31 1 3.2717 5.5276 2.4700 32 1 1.7964 6.0729 1.6366 33 1 0.6800 6.3973 3.8273 34 1 2.1555 5.8519 4.6599 35 1 3.4210 7.7277 3.6446 36 1 1.9450 8.2726 2.8122 37 1 3.3334 11.3545 4.2749 38 1 1.2496 -1.1690 -1.8153 39 1 2.7211 -0.1461 -1.8166 40 1 1.8949 -0.5229 2.0874 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861005450.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:55 Heat of formation + Delta-G solvation = -183.276440 kcal Electronic energy + Delta-G solvation = -21913.291034 eV Core-core repulsion = 18306.813126 eV Total energy + Delta-G solvation = -3606.477908 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.26486 -40.60316 -37.88897 -37.11017 -35.70920 -35.06722 -32.75381 -32.12086 -30.09050 -27.90811 -27.35302 -25.68913 -23.07643 -22.67437 -21.67251 -20.69200 -20.11313 -18.50497 -17.76825 -17.48596 -17.22246 -16.72293 -16.21405 -16.05789 -15.45502 -14.85504 -14.70378 -14.53698 -14.39353 -13.97384 -13.89863 -13.20103 -13.08984 -12.74991 -12.50315 -12.27626 -12.11617 -11.80758 -11.72261 -11.24947 -11.09240 -11.04752 -10.98656 -10.67957 -10.65249 -10.53849 -10.50159 -9.93189 -9.71201 -9.34198 -9.07928 -8.35174 -6.00099 -4.02961 2.09770 2.15116 2.24615 2.36513 2.96521 3.32426 3.37119 3.39135 3.47185 3.79237 3.92240 4.44990 4.47391 4.54838 4.62853 4.68644 4.82854 4.89852 5.09107 5.10494 5.15645 5.18224 5.35435 5.51301 5.59757 5.96535 6.07251 6.17028 6.35602 6.38293 6.68836 6.78247 6.86820 7.09930 7.60569 7.66788 7.67283 7.81603 8.00076 8.41644 9.04321 9.61049 11.11193 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.040803 B = 0.002270 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.060216 B =12332.592252 C =12499.324443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.123 3.877 3 C 0.062 3.938 4 O -0.358 6.358 5 C 0.462 3.538 6 O -0.501 6.501 7 C -0.111 4.111 8 C -0.109 4.109 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.051 3.949 20 O -0.326 6.326 21 C 0.645 3.355 22 O -0.521 6.521 23 N -0.720 5.720 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.871 -22.459 -11.796 26.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.036 3.964 3 C -0.013 4.013 4 O -0.275 6.275 5 C 0.305 3.695 6 O -0.387 6.387 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.024 4.024 20 O -0.236 6.236 21 C 0.398 3.602 22 O -0.405 6.405 23 N -0.393 5.393 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -6.121 -22.788 -12.058 26.498 hybrid contribution -0.299 0.938 1.040 1.432 sum -6.420 -21.850 -11.018 25.299 Atomic orbital electron populations 1.22152 0.90903 1.03624 1.04659 1.21777 0.97104 0.90953 0.86602 1.23346 1.00557 0.90141 0.87296 1.86483 1.71185 1.27663 1.42190 1.24289 0.76787 0.79443 0.88985 1.90698 1.35621 1.68879 1.43529 1.21635 1.03876 0.96454 0.92853 1.21593 1.01319 0.90942 1.00813 1.21651 1.00065 0.98523 0.94512 1.19090 0.96287 0.89236 0.97060 1.21229 1.32686 0.96837 1.05325 0.92742 1.25041 0.95193 0.97833 0.96464 1.69959 1.36590 1.12953 1.33962 0.86658 0.78844 0.78997 0.83478 1.20242 1.21302 1.20259 1.24394 0.96942 0.86712 0.94388 1.87297 1.68578 1.48542 1.19154 1.18507 0.78663 0.81590 0.81474 1.91106 1.49996 1.44793 1.54602 1.46102 1.54328 1.28725 1.10129 0.90197 0.91121 0.89995 0.89143 0.90224 0.87732 0.87770 0.91512 0.91496 0.93178 0.93169 0.96554 0.96559 0.92932 0.86430 0.87017 0.71583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.55 8.63 37.16 0.32 -0.23 16 2 C 0.12 0.64 1.17 -130.92 -0.15 0.48 16 3 C 0.06 0.43 4.44 37.16 0.16 0.59 16 4 O -0.36 -3.23 9.64 -39.24 -0.38 -3.61 16 5 C 0.46 5.52 7.96 36.00 0.29 5.80 16 6 O -0.50 -7.63 15.73 -18.76 -0.30 -7.92 16 7 C -0.11 -1.28 5.81 -27.89 -0.16 -1.44 16 8 C -0.11 -1.75 4.50 -26.73 -0.12 -1.87 16 9 C -0.11 -2.11 5.15 -26.73 -0.14 -2.25 16 10 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 11 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 15 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.05 0.21 7.53 37.73 0.28 0.50 16 20 O -0.33 -2.92 11.09 -37.82 -0.42 -3.34 16 21 C 0.65 6.91 9.16 53.71 0.49 7.40 16 22 O -0.52 -7.82 18.04 -19.12 -0.34 -8.17 16 23 N -0.72 -5.35 5.63 -52.01 -0.29 -5.64 16 24 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 0.36 7.81 -51.93 -0.41 -0.04 16 27 H 0.09 0.52 8.13 -51.93 -0.42 0.09 16 28 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.12 0.17 7.73 -51.93 -0.40 -0.23 16 39 H 0.11 0.27 7.73 -51.93 -0.40 -0.13 16 40 H 0.44 2.97 8.96 -40.82 -0.37 2.60 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -35.67 344.05 -6.59 -42.26 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -6.18 Total: -4.86 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 0.43 Total: -4.13 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.44 Total: -31.93 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -1.44 Total: -23.04 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.67 -6.59 -42.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861005450.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.019 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds