Wall clock time and date at job start Tue Mar 31 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 110.50524 * 2 1 4 4 O 1.45201 * 109.46884 * 62.26166 * 3 2 1 5 5 C 1.34222 * 117.00137 * 179.97438 * 4 3 2 6 6 O 1.20833 * 119.99852 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00432 * 179.71953 * 5 4 3 8 8 C 1.52996 * 109.47298 * 180.27351 * 7 5 4 9 9 C 1.53005 * 109.46952 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.46953 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46969 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00300 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99923 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99871 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99961 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47345 * 59.99934 * 15 13 11 17 17 H 1.48502 * 109.47317 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47211 * 300.00171 * 15 13 11 19 19 C 1.54089 * 110.56490 * 237.26068 * 2 1 3 20 20 O 1.45702 * 104.00948 * 241.27908 * 19 2 1 21 21 C 1.33766 * 109.47553 * 0.02562 * 20 19 2 22 22 O 1.21517 * 123.07216 * 179.97438 * 21 20 19 23 23 N 1.34006 * 113.86062 * 359.97438 * 21 20 19 24 24 H 1.09001 * 109.47394 * 59.99770 * 1 2 3 25 25 H 1.08999 * 109.46912 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47260 * 299.99883 * 1 2 3 27 27 H 1.08997 * 109.46911 * 302.26125 * 3 2 1 28 28 H 1.08997 * 109.46745 * 182.26134 * 3 2 1 29 29 H 1.09000 * 109.47190 * 300.28287 * 7 5 4 30 30 H 1.09006 * 109.46468 * 60.27870 * 7 5 4 31 31 H 1.08994 * 109.47515 * 300.00215 * 8 7 5 32 32 H 1.09006 * 109.46938 * 60.00806 * 8 7 5 33 33 H 1.09000 * 109.47278 * 300.00777 * 9 8 7 34 34 H 1.08998 * 109.46882 * 60.00298 * 9 8 7 35 35 H 1.09008 * 109.47282 * 300.00004 * 10 9 8 36 36 H 1.08998 * 109.47408 * 60.00223 * 10 9 8 37 37 H 0.96999 * 119.99800 * 179.97438 * 14 13 11 38 38 H 1.09007 * 110.52307 * 359.91364 * 19 2 1 39 39 H 1.09006 * 110.52320 * 122.64619 * 19 2 1 40 40 H 0.96995 * 125.56127 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0659 1.4331 0.0000 4 8 1.6387 2.1096 1.2117 5 6 2.0285 3.3844 1.3676 6 8 2.7041 3.9177 0.5195 7 6 1.6180 4.1530 2.5972 8 6 2.1840 5.5725 2.5241 9 6 1.7677 6.3525 3.7728 10 6 2.3332 7.7722 3.6993 11 6 1.9236 8.5403 4.9295 12 1 1.3200 8.0636 5.6877 13 6 2.3196 9.8516 5.0872 14 7 3.0551 10.4318 4.1642 15 14 1.8114 10.8039 6.6117 16 1 2.3397 10.1218 7.8204 17 1 2.3604 12.1819 6.5405 18 1 0.3295 10.8652 6.6859 19 6 2.0712 -0.7802 -1.2135 20 8 2.8312 -1.8726 -0.6201 21 6 2.7709 -1.7850 0.7133 22 8 3.3202 -2.5752 1.4553 23 7 2.0493 -0.7463 1.1563 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6794 1.9655 -0.8690 28 1 3.1550 1.4137 -0.0405 29 1 0.5302 4.1978 2.6513 30 1 2.0056 3.6525 3.4846 31 1 3.2717 5.5276 2.4700 32 1 1.7964 6.0729 1.6366 33 1 0.6800 6.3973 3.8273 34 1 2.1555 5.8519 4.6599 35 1 3.4210 7.7277 3.6446 36 1 1.9450 8.2726 2.8122 37 1 3.3334 11.3545 4.2749 38 1 1.2496 -1.1690 -1.8153 39 1 2.7211 -0.1461 -1.8166 40 1 1.8949 -0.5229 2.0874 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861005450.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:55 Heat of formation + Delta-G solvation = -208.386659 kcal Electronic energy + Delta-G solvation = -21914.379895 eV Core-core repulsion = 18306.813126 eV Total energy + Delta-G solvation = -3607.566768 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.89670 -41.50307 -38.72981 -37.95936 -36.67732 -36.32057 -34.65668 -32.73924 -31.66218 -28.57258 -27.96873 -27.11988 -24.48953 -23.56025 -22.25959 -21.99943 -21.43453 -19.14896 -18.65537 -18.36893 -18.18784 -17.94027 -17.53622 -16.92577 -16.48890 -16.33916 -15.84786 -15.28553 -15.09544 -14.76916 -14.58285 -14.42108 -14.09891 -13.78858 -13.56917 -13.46897 -13.31413 -12.91041 -12.79529 -12.49793 -12.38695 -12.18626 -12.17506 -11.94938 -11.80006 -11.73238 -11.62117 -11.37364 -11.29573 -11.05767 -10.56267 -10.53610 -8.18506 -6.30131 1.17617 1.41047 1.43127 1.44578 1.52399 1.53198 1.65019 2.42356 2.46648 3.03113 3.14631 3.26852 3.52132 3.81076 4.00965 4.02349 4.09904 4.16975 4.25418 4.40417 4.49527 4.57645 4.65359 4.80743 4.81380 4.84999 4.87565 5.15726 5.21138 5.27684 5.33016 5.40517 5.57273 5.71459 5.78797 5.89083 6.12945 6.25972 6.71183 6.88564 6.93226 7.39542 8.93396 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.040803 B = 0.002270 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.060216 B =12332.592252 C =12499.324443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.129 3.871 3 C 0.056 3.944 4 O -0.347 6.347 5 C 0.469 3.531 6 O -0.541 6.541 7 C -0.103 4.103 8 C -0.101 4.101 9 C -0.097 4.097 10 C 0.018 3.982 11 C -0.542 4.542 12 H 0.066 0.934 13 C -0.006 4.006 14 N -0.937 5.937 15 Si 0.967 3.033 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.264 1.264 19 C 0.047 3.953 20 O -0.341 6.341 21 C 0.644 3.356 22 O -0.576 6.576 23 N -0.710 5.710 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.061 0.939 35 H -0.015 1.015 36 H -0.012 1.012 37 H 0.263 0.737 38 H 0.152 0.848 39 H 0.131 0.869 40 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 -23.230 -11.535 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 C -0.019 4.019 4 O -0.263 6.263 5 C 0.314 3.686 6 O -0.430 6.430 7 C -0.140 4.140 8 C -0.139 4.139 9 C -0.134 4.134 10 C -0.019 4.019 11 C -0.580 4.580 12 H 0.084 0.916 13 C -0.203 4.203 14 N -0.578 5.578 15 Si 0.791 3.209 16 H -0.191 1.191 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.027 4.027 20 O -0.251 6.251 21 C 0.397 3.603 22 O -0.464 6.464 23 N -0.382 5.382 24 H 0.120 0.880 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.127 0.873 28 H 0.086 0.914 29 H 0.151 0.849 30 H 0.145 0.855 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.003 0.997 36 H 0.006 0.994 37 H 0.071 0.929 38 H 0.170 0.830 39 H 0.149 0.851 40 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -8.278 -23.564 -11.810 27.627 hybrid contribution 0.353 1.195 0.855 1.511 sum -7.925 -22.369 -10.955 26.138 Atomic orbital electron populations 1.22173 0.89031 1.04313 1.05462 1.21951 0.98299 0.89524 0.86059 1.23608 1.00209 0.91039 0.87011 1.86456 1.70491 1.26198 1.43201 1.24231 0.75889 0.80084 0.88415 1.90698 1.37506 1.69901 1.44899 1.21490 1.05376 0.93473 0.93662 1.21357 1.00295 0.93691 0.98579 1.21439 1.00541 0.94919 0.96505 1.19054 0.94478 0.93077 0.95262 1.21741 1.32588 0.97488 1.06215 0.91600 1.26059 0.95102 0.99183 0.99955 1.70112 1.37981 1.13381 1.36312 0.85476 0.79002 0.77187 0.79232 1.19059 1.21183 1.18879 1.24866 0.98050 0.85811 0.93975 1.87261 1.69307 1.50250 1.18259 1.18626 0.78346 0.81558 0.81779 1.91053 1.52309 1.46913 1.56159 1.46136 1.53217 1.27883 1.11009 0.87976 0.90510 0.90630 0.87331 0.91362 0.84887 0.85550 0.93405 0.92882 0.91691 0.92053 0.99662 0.99400 0.92867 0.83017 0.85123 0.71307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 8.63 71.98 0.62 0.05 16 2 C 0.13 1.00 1.17 3.86 0.00 1.01 16 3 C 0.06 0.65 4.44 71.98 0.32 0.97 16 4 O -0.35 -5.43 9.64 -51.34 -0.49 -5.93 16 5 C 0.47 10.38 7.96 71.23 0.57 10.94 16 6 O -0.54 -16.13 15.73 21.94 0.35 -15.79 16 7 C -0.10 -2.13 5.81 29.85 0.17 -1.96 16 8 C -0.10 -3.21 4.50 30.59 0.14 -3.08 16 9 C -0.10 -3.64 5.15 30.59 0.16 -3.48 16 10 C 0.02 0.97 4.97 29.85 0.15 1.11 16 11 C -0.54 -30.58 9.11 25.60 0.23 -30.34 16 12 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 13 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 14 N -0.94 -57.86 13.29 21.45 0.28 -57.57 16 15 Si 0.97 43.95 29.54 68.60 2.03 45.97 16 16 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 17 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 19 C 0.05 0.26 7.53 72.35 0.54 0.80 16 20 O -0.34 -5.75 11.09 -47.27 -0.52 -6.27 16 21 C 0.64 13.63 9.16 129.91 1.19 14.82 16 22 O -0.58 -17.87 18.04 19.63 0.35 -17.51 16 23 N -0.71 -9.68 5.63 -550.19 -3.10 -12.78 16 24 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 25 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.07 0.43 7.81 -2.39 -0.02 0.41 16 27 H 0.11 0.92 8.13 -2.39 -0.02 0.91 16 28 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 29 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.13 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 32 H 0.05 1.81 8.10 -2.38 -0.02 1.79 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 35 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 36 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 37 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.15 -0.16 7.73 -2.38 -0.02 -0.18 16 39 H 0.13 0.25 7.73 -2.38 -0.02 0.23 16 40 H 0.44 5.49 8.96 -92.71 -0.83 4.66 16 Total: -1.00 -80.73 344.05 3.66 -77.07 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 0.21 Total: 1.83 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 4.56 Total: -9.02 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -2.81 Total: -70.35 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.32 Total: -45.50 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -80.73 3.66 -77.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861005450.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.319 kcal (2) G-P(sol) polarization free energy of solvation -80.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds