Wall clock time and date at job start Tue Mar 31 2020 06:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99687 * 2 1 4 4 O 1.20826 * 120.00045 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00007 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47292 * 179.97438 * 5 3 2 7 7 C 1.37191 * 120.00331 * 263.08583 * 6 5 3 8 8 H 1.07996 * 120.00356 * 142.30191 * 7 6 5 9 9 C 1.38881 * 119.99666 * 322.29861 * 7 6 5 10 10 N 1.31474 * 120.00094 * 157.97779 * 9 7 6 11 11 Si 1.86805 * 120.00451 * 337.97757 * 9 7 6 12 12 H 1.48499 * 109.46751 * 95.91676 * 11 9 7 13 13 H 1.48495 * 109.47126 * 215.91998 * 11 9 7 14 14 H 1.48497 * 109.46721 * 335.92352 * 11 9 7 15 15 C 1.34780 * 119.99347 * 83.08117 * 6 5 3 16 16 O 1.21504 * 120.00582 * 359.97438 * 15 6 5 17 17 O 1.34668 * 119.99374 * 180.02562 * 15 6 5 18 18 C 1.45207 * 116.99697 * 179.97438 * 17 15 6 19 19 C 1.52995 * 109.46803 * 89.99979 * 18 17 15 20 20 C 1.53002 * 109.46813 * 179.97438 * 19 18 17 21 21 C 1.52996 * 109.47232 * 299.99924 * 20 19 18 22 22 C 1.52995 * 109.47159 * 60.00288 * 21 20 19 23 23 C 1.53000 * 109.46834 * 209.99556 * 18 17 15 24 24 H 1.08998 * 109.47276 * 59.99974 * 1 2 3 25 25 H 1.09003 * 109.46808 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46991 * 299.99346 * 1 2 3 27 27 H 1.09004 * 109.47319 * 60.00212 * 5 3 2 28 28 H 1.08999 * 109.47084 * 299.99919 * 5 3 2 29 29 H 0.96998 * 120.00133 * 180.02562 * 10 9 7 30 30 H 1.08997 * 109.47289 * 329.99763 * 18 17 15 31 31 H 1.08996 * 109.47371 * 299.99576 * 19 18 17 32 32 H 1.08999 * 109.47595 * 60.00328 * 19 18 17 33 33 H 1.09002 * 109.47490 * 179.97438 * 20 19 18 34 34 H 1.08995 * 109.47157 * 60.00419 * 20 19 18 35 35 H 1.08999 * 109.47308 * 299.99572 * 21 20 19 36 36 H 1.09002 * 109.47139 * 179.97438 * 21 20 19 37 37 H 1.08996 * 109.47371 * 180.02562 * 22 21 20 38 38 H 1.08999 * 109.47595 * 59.99459 * 22 21 20 39 39 H 1.08997 * 109.47352 * 300.00169 * 23 18 17 40 40 H 1.09003 * 109.46678 * 60.00390 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.3128 3.2969 -1.1808 8 1 4.0378 4.3280 -1.3467 9 6 5.0018 2.5956 -2.1617 10 7 4.9492 2.9932 -3.4137 11 14 6.0034 1.0871 -1.7021 12 1 5.1898 -0.1346 -1.9274 13 1 7.2260 1.0298 -2.5430 14 1 6.3902 1.1672 -0.2707 15 6 4.0382 3.3662 1.1575 16 8 3.7443 2.8199 2.2023 17 8 4.4195 4.6577 1.1570 18 6 4.4569 5.3345 2.4412 19 6 5.8434 5.1667 3.0658 20 6 5.8830 5.8804 4.4186 21 6 5.5903 7.3687 4.2189 22 6 4.2037 7.5365 3.5943 23 6 4.1640 6.8229 2.2419 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 3.9557 0.7811 -0.8909 28 1 3.9564 0.7807 0.8891 29 1 5.4302 2.5031 -4.0988 30 1 3.7059 4.9017 3.1020 31 1 6.0521 4.1064 3.2078 32 1 6.5944 5.5997 2.4051 33 1 6.8706 5.7606 4.8640 34 1 5.1320 5.4479 5.0797 35 1 6.3414 7.8013 3.5579 36 1 5.6180 7.8770 5.1827 37 1 3.9954 8.5968 3.4515 38 1 3.4527 7.1040 4.2552 39 1 4.9150 7.2557 1.5811 40 1 3.1761 6.9423 1.7969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866816900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:20 Heat of formation + Delta-G solvation = -165.553638 kcal Electronic energy + Delta-G solvation = -23807.074947 eV Core-core repulsion = 20201.365558 eV Total energy + Delta-G solvation = -3605.709389 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.16324 -39.49885 -37.96855 -36.20068 -35.34646 -34.68770 -32.03885 -30.66678 -29.89224 -28.74815 -26.57589 -24.99995 -22.58509 -22.34533 -21.06283 -19.75119 -19.67052 -18.22464 -17.39485 -16.86189 -16.16876 -15.94612 -15.54140 -15.12696 -15.06863 -14.79071 -14.12818 -13.95212 -13.45556 -13.19498 -12.99884 -12.84655 -12.73962 -12.32794 -12.29769 -12.08517 -11.81217 -11.56391 -11.08308 -11.01647 -10.90806 -10.66745 -10.57832 -10.44968 -10.36573 -10.13793 -10.10498 -9.95308 -9.73871 -9.47385 -9.06811 -8.06585 -6.50092 -4.12765 2.82285 2.86078 2.97039 3.16264 3.21559 3.34993 3.89966 4.05818 4.74182 4.84141 4.85892 4.93965 5.15561 5.33176 5.35544 5.40332 5.43493 5.44955 5.57550 5.59291 5.61908 5.65617 5.73016 5.76655 5.81245 5.91809 6.07928 6.16407 6.19531 6.27880 6.33030 6.49200 6.54123 6.81228 7.04453 7.35902 8.00712 8.27249 8.36711 8.85776 9.18836 9.59558 10.61079 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015586 B = 0.005912 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.044466 B = 4735.181675 C = 5715.246524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.448 3.552 4 O -0.488 6.488 5 C 0.129 3.871 6 N -0.439 5.439 7 C -0.332 4.332 8 H 0.111 0.889 9 C 0.064 3.936 10 N -0.854 5.854 11 Si 0.857 3.143 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.257 1.257 15 C 0.635 3.365 16 O -0.617 6.617 17 O -0.340 6.340 18 C 0.106 3.894 19 C -0.136 4.136 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.116 4.116 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.276 0.724 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 1.034 10.111 10.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.288 3.712 4 O -0.373 6.373 5 C 0.004 3.996 6 N -0.167 5.167 7 C -0.458 4.458 8 H 0.128 0.872 9 C -0.143 4.143 10 N -0.489 5.489 11 Si 0.683 3.317 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.181 1.181 15 C 0.392 3.608 16 O -0.512 6.512 17 O -0.253 6.253 18 C 0.049 3.951 19 C -0.173 4.173 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.154 4.154 24 H 0.079 0.921 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.038 1.254 10.217 10.346 hybrid contribution 0.263 -0.809 -0.071 0.854 sum -0.775 0.444 10.146 10.185 Atomic orbital electron populations 1.23148 0.77453 1.02876 1.02298 1.86517 1.22744 1.34344 1.84926 1.24752 0.92842 0.81289 0.72315 1.90623 1.66530 1.36288 1.43852 1.21312 0.87031 0.85899 1.05316 1.42030 1.60962 1.08457 1.05250 1.19122 1.36405 0.99859 0.90460 0.87163 1.25346 0.96164 0.98084 0.94719 1.69784 1.38929 1.40619 0.99598 0.87227 0.81366 0.82721 0.80416 1.19533 1.20485 1.18081 1.17953 0.78099 0.81188 0.83578 1.90819 1.58663 1.70095 1.31617 1.86425 1.81327 1.23698 1.33876 1.22458 0.97701 0.91618 0.83308 1.21942 0.97362 1.01485 0.96548 1.21476 1.01650 0.95172 0.96879 1.21589 0.97326 0.96497 1.00520 1.21483 0.97415 1.00163 0.96097 1.21581 1.03028 0.93074 0.97715 0.92137 0.88661 0.92325 0.86701 0.87060 0.91338 0.90262 0.91277 0.91102 0.91773 0.91858 0.91735 0.92073 0.91425 0.91845 0.90766 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.86 10.57 -39.26 -0.41 -7.28 16 3 C 0.45 10.01 7.98 36.00 0.29 10.30 16 4 O -0.49 -12.29 16.01 -18.75 -0.30 -12.59 16 5 C 0.13 2.93 4.49 -5.19 -0.02 2.91 16 6 N -0.44 -11.25 1.74 -121.52 -0.21 -11.46 16 7 C -0.33 -9.16 9.37 -14.92 -0.14 -9.30 16 8 H 0.11 3.32 7.90 -52.49 -0.41 2.90 16 9 C 0.06 1.71 5.26 -17.47 -0.09 1.62 16 10 N -0.85 -23.83 13.96 55.49 0.77 -23.06 16 11 Si 0.86 19.45 25.02 -169.99 -4.25 15.20 16 12 H -0.27 -5.67 6.71 56.52 0.38 -5.29 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 14 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 15 C 0.64 16.02 8.06 54.06 0.44 16.45 16 16 O -0.62 -15.72 15.30 -19.27 -0.29 -16.02 16 17 O -0.34 -7.91 9.02 -40.40 -0.36 -8.28 16 18 C 0.11 1.93 2.46 -26.73 -0.07 1.86 16 19 C -0.14 -2.15 5.56 -26.73 -0.15 -2.30 16 20 C -0.11 -1.39 5.92 -26.73 -0.16 -1.55 16 21 C -0.12 -1.31 5.92 -26.74 -0.16 -1.46 16 22 C -0.11 -1.31 5.92 -26.76 -0.16 -1.47 16 23 C -0.12 -1.73 5.58 -26.75 -0.15 -1.88 16 24 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 27 H 0.12 2.54 3.66 -51.93 -0.19 2.35 16 28 H 0.11 2.29 7.64 -51.93 -0.40 1.89 16 29 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.08 1.53 7.16 -51.93 -0.37 1.16 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 330.10 15.07 4.97 4.97 Total: -1.00 -32.05 330.10 -5.42 -37.47 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.03 Total: 4.27 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 0.70 Total: 16.77 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.56 Total: -34.52 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -1.37 Total: -44.16 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.25 Total: 15.20 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.05 -5.42 -37.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866816900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.088 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds