Wall clock time and date at job start Tue Mar 31 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99687 * 2 1 4 4 O 1.20826 * 120.00045 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00007 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47292 * 179.97438 * 5 3 2 7 7 C 1.37191 * 120.00331 * 263.08583 * 6 5 3 8 8 H 1.07996 * 120.00356 * 142.30191 * 7 6 5 9 9 C 1.38881 * 119.99666 * 322.29861 * 7 6 5 10 10 N 1.31474 * 120.00094 * 157.97779 * 9 7 6 11 11 Si 1.86805 * 120.00451 * 337.97757 * 9 7 6 12 12 H 1.48499 * 109.46751 * 95.91676 * 11 9 7 13 13 H 1.48495 * 109.47126 * 215.91998 * 11 9 7 14 14 H 1.48497 * 109.46721 * 335.92352 * 11 9 7 15 15 C 1.34780 * 119.99347 * 83.08117 * 6 5 3 16 16 O 1.21504 * 120.00582 * 359.97438 * 15 6 5 17 17 O 1.34668 * 119.99374 * 180.02562 * 15 6 5 18 18 C 1.45207 * 116.99697 * 179.97438 * 17 15 6 19 19 C 1.52995 * 109.46803 * 89.99979 * 18 17 15 20 20 C 1.53002 * 109.46813 * 179.97438 * 19 18 17 21 21 C 1.52996 * 109.47232 * 299.99924 * 20 19 18 22 22 C 1.52995 * 109.47159 * 60.00288 * 21 20 19 23 23 C 1.53000 * 109.46834 * 209.99556 * 18 17 15 24 24 H 1.08998 * 109.47276 * 59.99974 * 1 2 3 25 25 H 1.09003 * 109.46808 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46991 * 299.99346 * 1 2 3 27 27 H 1.09004 * 109.47319 * 60.00212 * 5 3 2 28 28 H 1.08999 * 109.47084 * 299.99919 * 5 3 2 29 29 H 0.96998 * 120.00133 * 180.02562 * 10 9 7 30 30 H 1.08997 * 109.47289 * 329.99763 * 18 17 15 31 31 H 1.08996 * 109.47371 * 299.99576 * 19 18 17 32 32 H 1.08999 * 109.47595 * 60.00328 * 19 18 17 33 33 H 1.09002 * 109.47490 * 179.97438 * 20 19 18 34 34 H 1.08995 * 109.47157 * 60.00419 * 20 19 18 35 35 H 1.08999 * 109.47308 * 299.99572 * 21 20 19 36 36 H 1.09002 * 109.47139 * 179.97438 * 21 20 19 37 37 H 1.08996 * 109.47371 * 180.02562 * 22 21 20 38 38 H 1.08999 * 109.47595 * 59.99459 * 22 21 20 39 39 H 1.08997 * 109.47352 * 300.00169 * 23 18 17 40 40 H 1.09003 * 109.46678 * 60.00390 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.3128 3.2969 -1.1808 8 1 4.0378 4.3280 -1.3467 9 6 5.0018 2.5956 -2.1617 10 7 4.9492 2.9932 -3.4137 11 14 6.0034 1.0871 -1.7021 12 1 5.1898 -0.1346 -1.9274 13 1 7.2260 1.0298 -2.5430 14 1 6.3902 1.1672 -0.2707 15 6 4.0382 3.3662 1.1575 16 8 3.7443 2.8199 2.2023 17 8 4.4195 4.6577 1.1570 18 6 4.4569 5.3345 2.4412 19 6 5.8434 5.1667 3.0658 20 6 5.8830 5.8804 4.4186 21 6 5.5903 7.3687 4.2189 22 6 4.2037 7.5365 3.5943 23 6 4.1640 6.8229 2.2419 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 3.9557 0.7811 -0.8909 28 1 3.9564 0.7807 0.8891 29 1 5.4302 2.5031 -4.0988 30 1 3.7059 4.9017 3.1020 31 1 6.0521 4.1064 3.2078 32 1 6.5944 5.5997 2.4051 33 1 6.8706 5.7606 4.8640 34 1 5.1320 5.4479 5.0797 35 1 6.3414 7.8013 3.5579 36 1 5.6180 7.8770 5.1827 37 1 3.9954 8.5968 3.4515 38 1 3.4527 7.1040 4.2552 39 1 4.9150 7.2557 1.5811 40 1 3.1761 6.9423 1.7969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866816900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:19 Heat of formation + Delta-G solvation = -185.198913 kcal Electronic energy + Delta-G solvation = -23807.926830 eV Core-core repulsion = 20201.365558 eV Total energy + Delta-G solvation = -3606.561272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.94262 -41.17451 -39.38924 -37.80837 -37.07649 -36.58393 -34.10181 -31.78064 -31.25661 -30.29489 -27.99641 -27.02073 -23.91255 -23.53959 -22.64011 -21.58248 -20.84918 -20.11978 -19.15188 -18.66855 -17.85211 -17.57134 -17.28590 -16.89215 -16.69831 -16.31204 -15.26864 -15.16594 -15.06035 -14.70531 -14.70279 -14.50706 -14.11017 -13.90749 -13.72846 -13.42524 -13.20123 -13.02049 -12.94017 -12.47208 -12.27935 -12.10213 -12.00060 -11.85240 -11.85099 -11.81095 -11.67007 -11.47867 -11.35939 -11.00751 -10.84478 -10.08089 -8.56217 -6.25737 1.07217 1.16324 1.20982 1.32481 1.44391 1.66288 2.04229 2.13957 2.85190 3.26793 3.68930 3.71803 3.83164 3.85521 3.99986 4.04905 4.21870 4.22675 4.28536 4.30005 4.30455 4.48072 4.51554 4.63475 4.64076 4.89223 4.95183 5.05424 5.08823 5.16603 5.19263 5.23582 5.27148 5.32724 5.44980 5.62428 6.02289 6.09453 6.65895 6.80654 7.11527 7.63232 8.59263 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015586 B = 0.005912 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.044466 B = 4735.181675 C = 5715.246524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.451 3.549 4 O -0.527 6.527 5 C 0.121 3.879 6 N -0.448 5.448 7 C -0.346 4.346 8 H 0.065 0.935 9 C 0.025 3.975 10 N -0.894 5.894 11 Si 0.918 3.082 12 H -0.235 1.235 13 H -0.271 1.271 14 H -0.255 1.255 15 C 0.629 3.371 16 O -0.627 6.627 17 O -0.362 6.362 18 C 0.094 3.906 19 C -0.132 4.132 20 C -0.109 4.109 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.113 4.113 24 H 0.057 0.943 25 H 0.144 0.856 26 H 0.058 0.942 27 H 0.124 0.876 28 H 0.134 0.866 29 H 0.285 0.715 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 -0.093 11.566 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.293 3.707 4 O -0.415 6.415 5 C -0.003 4.003 6 N -0.176 5.176 7 C -0.473 4.473 8 H 0.083 0.917 9 C -0.179 4.179 10 N -0.529 5.529 11 Si 0.740 3.260 12 H -0.159 1.159 13 H -0.196 1.196 14 H -0.179 1.179 15 C 0.386 3.614 16 O -0.523 6.523 17 O -0.275 6.275 18 C 0.038 3.962 19 C -0.169 4.169 20 C -0.146 4.146 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.151 4.151 24 H 0.076 0.924 25 H 0.162 0.838 26 H 0.077 0.923 27 H 0.141 0.859 28 H 0.152 0.848 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.422 0.108 11.679 11.687 hybrid contribution -0.050 -0.434 -0.534 0.690 sum -0.472 -0.326 11.145 11.160 Atomic orbital electron populations 1.23592 0.74708 1.06045 1.02220 1.86483 1.25249 1.31877 1.83999 1.24598 0.92832 0.81764 0.71498 1.90610 1.67285 1.37766 1.45838 1.21479 0.87750 0.84406 1.06696 1.42077 1.61449 1.09537 1.04570 1.18748 1.38106 0.98774 0.91691 0.91733 1.26017 0.96273 1.01624 0.94025 1.69864 1.39648 1.42701 1.00727 0.86251 0.79956 0.79703 0.80108 1.15931 1.19649 1.17917 1.18148 0.78002 0.81750 0.83527 1.90779 1.59245 1.70515 1.31725 1.86423 1.80994 1.23094 1.36995 1.22942 0.98935 0.92903 0.81371 1.21932 0.95553 1.00744 0.98713 1.21489 1.02939 0.95903 0.94291 1.21600 0.96549 0.95359 1.02025 1.21509 0.98404 1.00945 0.93704 1.21649 1.02201 0.91068 1.00189 0.92444 0.83807 0.92328 0.85925 0.84813 0.90530 0.91801 0.93478 0.91113 0.89720 0.91860 0.91261 0.89206 0.89035 0.91593 0.90843 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.92 16 2 O -0.36 -12.76 10.57 -51.42 -0.54 -13.30 16 3 C 0.45 20.04 7.98 71.23 0.57 20.61 16 4 O -0.53 -27.07 16.01 21.96 0.35 -26.72 16 5 C 0.12 5.39 4.49 85.63 0.38 5.78 16 6 N -0.45 -23.50 1.74 -768.77 -1.34 -24.84 16 7 C -0.35 -19.92 9.37 84.01 0.79 -19.13 16 8 H 0.06 4.19 7.90 -2.91 -0.02 4.17 16 9 C 0.03 1.36 5.26 84.90 0.45 1.81 16 10 N -0.89 -50.80 13.96 21.65 0.30 -50.50 16 11 Si 0.92 39.29 25.02 68.60 1.72 41.01 16 12 H -0.23 -8.78 6.71 99.48 0.67 -8.12 16 13 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 14 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 15 C 0.63 32.83 8.06 129.79 1.05 33.88 16 16 O -0.63 -32.64 15.30 19.83 0.30 -32.33 16 17 O -0.36 -17.73 9.02 -55.77 -0.50 -18.23 16 18 C 0.09 3.54 2.46 30.59 0.08 3.62 16 19 C -0.13 -4.20 5.56 30.59 0.17 -4.03 16 20 C -0.11 -2.46 5.92 30.59 0.18 -2.28 16 21 C -0.12 -2.19 5.92 30.59 0.18 -2.01 16 22 C -0.11 -2.29 5.92 30.58 0.18 -2.11 16 23 C -0.11 -3.42 5.58 30.58 0.17 -3.25 16 24 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 25 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.06 1.58 8.13 -2.38 -0.02 1.56 16 27 H 0.12 5.21 3.66 -2.38 -0.01 5.20 16 28 H 0.13 5.31 7.64 -2.39 -0.02 5.29 16 29 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 30 H 0.06 2.57 7.16 -2.39 -0.02 2.55 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -72.65 330.10 6.67 -65.98 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.99 Total: 24.13 kcal Atomic # 6 Polarization: 29.42 SS G_CDS: 5.39 Total: 34.80 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -1.04 Total: -75.35 kcal Atomic # 8 Polarization: -90.19 SS G_CDS: -0.39 Total: -90.58 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.72 Total: 41.01 kcal Total: -72.65 6.67 -65.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866816900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.214 kcal (2) G-P(sol) polarization free energy of solvation -72.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds