Wall clock time and date at job start Tue Mar 31 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47046 * 2 1 4 4 C 1.52998 * 109.47233 * 120.00362 * 2 1 3 5 5 C 1.50699 * 109.47025 * 294.99829 * 4 2 1 6 6 H 1.07991 * 120.00152 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99572 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00229 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99528 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47265 * 60.00417 * 9 7 5 11 11 H 1.48498 * 109.46947 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47428 * 300.00067 * 9 7 5 13 13 C 1.53004 * 109.46855 * 240.00296 * 2 1 3 14 14 N 1.46901 * 109.46902 * 65.00107 * 13 2 1 15 15 C 1.46891 * 111.00317 * 66.04539 * 14 13 2 16 16 C 1.46904 * 110.99781 * 189.99909 * 14 13 2 17 17 C 1.50701 * 109.46998 * 169.99697 * 16 14 13 18 18 N 1.30469 * 125.64491 * 269.99870 * 17 16 14 19 19 C 1.34169 * 109.26708 * 180.02562 * 18 17 16 20 20 C 1.34794 * 108.01578 * 0.02562 * 19 18 17 21 21 Cl 1.73596 * 126.59558 * 180.02562 * 20 19 18 22 22 N 1.35166 * 125.64206 * 90.00083 * 17 16 14 23 23 C 1.46499 * 126.40019 * 0.02562 * 22 17 16 24 24 H 1.09001 * 109.46705 * 299.99452 * 1 2 3 25 25 H 1.08994 * 109.47416 * 59.99571 * 1 2 3 26 26 H 1.09001 * 109.47046 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47150 * 55.00255 * 4 2 1 28 28 H 1.09004 * 109.46958 * 174.99980 * 4 2 1 29 29 H 0.97002 * 120.00371 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.47381 * 304.99765 * 13 2 1 31 31 H 1.09005 * 109.47092 * 184.99672 * 13 2 1 32 32 H 1.09000 * 109.47536 * 183.95011 * 15 14 13 33 33 H 1.09006 * 109.47310 * 303.95284 * 15 14 13 34 34 H 1.08998 * 109.47397 * 63.95305 * 15 14 13 35 35 H 1.09002 * 109.46798 * 49.99832 * 16 14 13 36 36 H 1.09000 * 109.47215 * 289.99664 * 16 14 13 37 37 H 1.08000 * 125.98707 * 180.26031 * 19 18 17 38 38 H 1.09006 * 109.46775 * 269.97682 * 23 22 17 39 39 H 1.09004 * 109.47219 * 29.97376 * 23 22 17 40 40 H 1.08990 * 109.47239 * 149.97459 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0801 0.9740 2.3757 7 6 1.9925 -0.4025 3.7283 8 7 2.6756 -1.5195 3.8510 9 14 1.4990 0.5626 5.2496 10 1 0.0190 0.6702 5.3091 11 1 1.9928 -0.1382 6.4621 12 1 2.0921 1.9225 5.1872 13 6 2.0400 -0.7212 -1.2493 14 7 1.6513 0.0376 -2.4456 15 6 2.3340 1.3375 -2.4894 16 6 1.9123 -0.7355 -3.6672 17 6 1.2828 -0.0395 -4.8463 18 7 0.0702 -0.2353 -5.2863 19 6 -0.1480 0.5540 -6.3490 20 6 0.9735 1.2663 -6.5766 21 17 1.2189 2.4363 -7.8354 22 7 1.8810 0.8910 -5.6231 23 6 3.2462 1.4009 -5.4737 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6055 -1.7199 1.2950 28 1 3.1264 -0.7995 1.2055 29 1 2.9229 -1.8425 4.7316 30 1 1.6054 -1.7197 -1.2953 31 1 3.1263 -0.7994 -1.2057 32 1 1.9759 1.9073 -3.3469 33 1 2.1239 1.8893 -1.5731 34 1 3.4087 1.1806 -2.5807 35 1 1.4856 -1.7332 -3.5639 36 1 2.9881 -0.8149 -3.8241 37 1 -1.0632 0.6116 -6.9195 38 1 3.2396 2.2691 -4.8145 39 1 3.8794 0.6241 -5.0450 40 1 3.6353 1.6890 -6.4501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877168538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:04 Heat of formation + Delta-G solvation = 52.502733 kcal Electronic energy + Delta-G solvation = -20402.525654 eV Core-core repulsion = 17279.273814 eV Total energy + Delta-G solvation = -3123.251840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.41350 -37.92970 -37.02683 -34.66731 -34.20551 -32.11325 -30.25077 -27.85349 -27.12167 -26.77916 -26.11719 -23.73517 -21.86810 -21.62399 -19.88722 -18.89347 -17.54076 -16.74058 -16.27067 -15.63291 -15.02159 -14.90859 -14.61631 -14.30144 -14.04107 -13.52919 -13.45603 -13.07830 -12.78742 -12.52846 -12.36585 -12.18035 -11.87751 -11.78116 -11.52290 -11.35777 -11.25420 -10.83487 -10.73894 -10.30579 -10.27016 -10.16998 -9.89391 -9.61083 -9.15580 -8.98640 -8.54598 -8.32103 -8.14660 -5.97338 -3.98313 1.34725 1.57394 2.61707 2.82684 3.34877 3.39286 3.41950 4.04333 4.26452 4.33340 4.48904 4.69363 4.72286 4.99593 5.11326 5.21870 5.34721 5.37827 5.40043 5.53014 5.69343 5.81533 5.89258 5.98988 6.16037 6.26321 6.39168 6.51711 6.69840 6.74795 6.99387 7.08455 7.18721 7.28097 7.34941 7.68913 7.81072 7.85326 8.02798 8.46962 9.07795 9.65044 11.14176 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.038840 B = 0.002915 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.734713 B = 9602.876531 C = 9640.333519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.080 4.080 3 H 0.056 0.944 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.062 3.938 14 N -0.528 5.528 15 C 0.017 3.983 16 C 0.137 3.863 17 C 0.246 3.754 18 N -0.464 5.464 19 C 0.009 3.991 20 C 0.005 3.995 21 Cl -0.014 7.014 22 N -0.453 5.453 23 C 0.063 3.937 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.017 0.983 28 H 0.012 0.988 29 H 0.260 0.740 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.023 0.977 35 H 0.110 0.890 36 H 0.049 0.951 37 H 0.179 0.821 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 5.570 -22.703 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.065 4.065 14 N -0.253 5.253 15 C -0.131 4.131 16 C 0.007 3.993 17 C -0.016 4.016 18 N -0.182 5.182 19 C -0.141 4.141 20 C -0.135 4.135 21 Cl 0.014 6.986 22 N -0.138 5.138 23 C -0.079 4.079 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.042 0.958 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.196 0.804 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.532 5.146 -22.299 22.891 hybrid contribution 1.352 1.189 0.295 1.825 sum 1.885 6.335 -22.004 22.975 Atomic orbital electron populations 1.21583 0.95547 1.00712 1.00207 1.21238 0.96161 0.98986 0.93513 0.92598 1.19120 0.95823 0.95635 0.90376 1.21192 1.34639 1.08306 0.90977 0.92637 1.25009 0.95334 0.95080 0.99061 1.69947 1.39059 1.21211 1.23488 0.86700 0.78965 0.80072 0.82512 1.20232 1.21386 1.20352 1.22388 0.97719 0.97448 0.88927 1.61969 1.58440 1.03835 1.01061 1.22603 0.95396 0.92025 1.03070 1.20469 0.96874 0.97051 0.84892 1.23126 0.89938 0.92705 0.95854 1.70460 1.13433 1.23746 1.10540 1.22204 0.97348 0.96722 0.97843 1.21731 0.93477 1.03227 0.95103 1.98370 1.97024 1.55884 1.47347 1.45185 1.12818 1.32277 1.23558 1.22249 0.79919 1.01426 1.04341 0.92831 0.93853 0.94046 0.96479 0.96990 0.93044 0.90743 0.94992 0.92581 0.89991 0.95824 0.87215 0.93352 0.80395 0.89634 0.88912 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.60 2.26 -90.62 -0.20 -1.80 16 3 H 0.06 1.13 6.26 -51.93 -0.33 0.80 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.23 8.41 -34.44 -0.29 -14.52 16 6 H 0.06 1.51 7.05 -52.49 -0.37 1.14 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.06 1.01 4.35 -3.82 -0.02 0.99 16 14 N -0.53 -7.55 4.21 -244.37 -1.03 -8.58 16 15 C 0.02 0.22 8.11 60.06 0.49 0.71 16 16 C 0.14 1.65 5.28 -4.97 -0.03 1.63 16 17 C 0.25 3.14 6.55 -155.33 -1.02 2.13 16 18 N -0.46 -6.71 11.25 -10.76 -0.12 -6.83 16 19 C 0.01 0.11 11.86 -17.75 -0.21 -0.10 16 20 C 0.00 0.05 7.49 -16.52 -0.12 -0.07 16 21 Cl -0.01 -0.13 28.93 -51.86 -1.50 -1.63 16 22 N -0.45 -4.84 2.77 -117.77 -0.33 -5.17 16 23 C 0.06 0.45 9.51 59.85 0.57 1.02 16 24 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 25 H 0.04 0.80 7.75 -51.93 -0.40 0.39 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 31 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.06 0.68 5.34 -51.93 -0.28 0.40 16 33 H 0.08 1.17 6.21 -51.93 -0.32 0.84 16 34 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.11 1.33 7.93 -51.93 -0.41 0.92 16 36 H 0.05 0.48 7.05 -51.93 -0.37 0.12 16 37 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.09 0.58 6.83 -51.93 -0.35 0.23 16 39 H 0.09 0.56 7.05 -51.93 -0.37 0.20 16 40 H 0.09 0.51 7.92 -51.93 -0.41 0.10 16 LS Contribution 335.25 15.07 5.05 5.05 Total: -1.00 -31.41 335.25 -8.98 -40.40 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -6.05 Total: -3.77 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -0.72 Total: -10.04 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.74 Total: -46.62 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.50 Total: -1.63 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.41 -8.98 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877168538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.899 kcal (2) G-P(sol) polarization free energy of solvation -31.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds